Gene annotation
Transcriptome id Sobic.004G293000.1
Synonym Sb04g032690
Functional annotation MSP domain containing protein, expressed
UniProt C5Y1H0
Pfam PF00635
Panther DB PTHR10809 PTHR10809:SF51
NCBI CDD KOG0439; VAMP-associated protein involved in inositol metabolism
KEGG Orthology -
Gene Ontology GO:0005789; endoplasmic reticulum membrane


Orthologs (automatic annotation)
TAIR AT4G00170 : Plant VAMP (vesicle-associated membrane protein) family protein
RAP-DB (Rice) LOC_Os02g44300.1 : MSP domain containing protein, expressed
MaizeGDB (Corn) Zm00025a021399 , Zm00025a032228
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G427200 josephin, putative, expressed K15235: josephin
2 Sobic.005G044800 hydrolase, alpha/beta fold family domain containing protein, expressed -
3 Sobic.004G174100 expressed protein -
4 Sobic.006G239800 FGGY family of carbohydrate kinases, putative, expressed K00864: glpK, glycerol kinase
5 Sobic.005G064800 aldehyde dehydrogenase, putative, expressed K00128: aldehyde dehydrogenase (NAD+)
6 Sobic.003G376400 expressed protein -
7 Sobic.006G222100 dehydrogenase, putative, expressed -
8 Sobic.009G099500 expressed protein -
9 Sobic.002G187300 calmodulin-binding protein, putative, expressed -
10 Sobic.007G168200 peptidyl-prolyl cis-trans isomerase, putative, expressed K12733: peptidyl-prolyl cis-trans isomerase-like 1
11 Sobic.001G045000 CAMK_CAMK_like.24 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
12 Sobic.001G393800 enoyl-CoA hydratase/isomerase family protein, putative, expressed -
13 Sobic.003G436300 expressed protein -
14 Sobic.007G073700 nucleoside transporter, putative, expressed K15014: SLC29A1_2_3, solute carrier family 29 (equilibrative nucleoside transporter), member 1/2/3
15 Sobic.006G028100 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@electron transfer flavoprotein subunit beta, putative, expressed K03521: fixA, electron transfer flavoprotein beta subunit
16 Sobic.006G244700 6,7-dimethyl-8-ribityllumazine synthase, chloroplast precursor, putative, expressed K00794: ribH, 6,7-dimethyl-8-ribityllumazine synthase
17 Sobic.003G414500 acyltransferase, putative, expressed K13511: monolysocardiolipin acyltransferase
18 Sobic.003G241500 dehydrogenase, putative, expressed K00031: IDH1, IDH2, isocitrate dehydrogenase
19 Sobic.001G057200 pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase
20 Sobic.002G315800 Papain family cysteine protease domain containing protein, expressed K01363: cathepsin B


Gene co-expression network
sample Sobic004G293000 Sobic004G293000 Sobic001G427200 Sobic001G427200 Sobic004G293000--Sobic001G427200 Sobic005G044800 Sobic005G044800 Sobic004G293000--Sobic005G044800 Sobic004G174100 Sobic004G174100 Sobic004G293000--Sobic004G174100 Sobic006G239800 Sobic006G239800 Sobic004G293000--Sobic006G239800 Sobic005G064800 Sobic005G064800 Sobic004G293000--Sobic005G064800 Sobic003G376400 Sobic003G376400 Sobic004G293000--Sobic003G376400 Sobic006G222100 Sobic006G222100 Sobic004G293000--Sobic006G222100 Sobic009G099500 Sobic009G099500 Sobic004G293000--Sobic009G099500 Sobic002G187300 Sobic002G187300 Sobic004G293000--Sobic002G187300 Sobic003G436300 Sobic003G436300 Sobic001G427200--Sobic003G436300 Sobic003G217400 Sobic003G217400 Sobic001G427200--Sobic003G217400 Sobic001G427200--Sobic004G174100 Sobic003G077900 Sobic003G077900 Sobic001G427200--Sobic003G077900 Sobic002G251700 Sobic002G251700 Sobic001G427200--Sobic002G251700 Sobic010G090900 Sobic010G090900 Sobic001G427200--Sobic010G090900 Sobic003G116900 Sobic003G116900 Sobic001G427200--Sobic003G116900 Sobic001G427200--Sobic005G044800 Sobic003G299000 Sobic003G299000 Sobic001G427200--Sobic003G299000 Sobic004G358600 Sobic004G358600 Sobic005G044800--Sobic004G358600 Sobic003G012200 Sobic003G012200 Sobic005G044800--Sobic003G012200 Sobic003G372000 Sobic003G372000 Sobic005G044800--Sobic003G372000 Sobic006G244700 Sobic006G244700 Sobic005G044800--Sobic006G244700 Sobic003G344900 Sobic003G344900 Sobic005G044800--Sobic003G344900 Sobic004G127700 Sobic004G127700 Sobic005G044800--Sobic004G127700 Sobic002G116900 Sobic002G116900 Sobic005G044800--Sobic002G116900 Sobic003G273600 Sobic003G273600 Sobic005G044800--Sobic003G273600 Sobic003G055700 Sobic003G055700 Sobic005G044800--Sobic003G055700 Sobic004G174100--Sobic001G427200 Sobic006G242000 Sobic006G242000 Sobic004G174100--Sobic006G242000 Sobic002G130700 Sobic002G130700 Sobic004G174100--Sobic002G130700 Sobic004G174100--Sobic005G064800 Sobic001G022600 Sobic001G022600 Sobic004G174100--Sobic001G022600 Sobic002G193400 Sobic002G193400 Sobic004G174100--Sobic002G193400 Sobic008G142600 Sobic008G142600 Sobic004G174100--Sobic008G142600 Sobic004G174100--Sobic004G293000 Sobic004G253900 Sobic004G253900 Sobic004G174100--Sobic004G253900 Sobic006G157700 Sobic006G157700 Sobic006G239800--Sobic006G157700 Sobic006G239800--Sobic005G044800 Sobic001G057200 Sobic001G057200 Sobic006G239800--Sobic001G057200 Sobic006G239800--Sobic006G222100 Sobic009G177400 Sobic009G177400 Sobic006G239800--Sobic009G177400 Sobic010G274500 Sobic010G274500 Sobic006G239800--Sobic010G274500 Sobic006G176600 Sobic006G176600 Sobic006G239800--Sobic006G176600 Sobic003G354400 Sobic003G354400 Sobic006G239800--Sobic003G354400 Sobic001G120300 Sobic001G120300 Sobic006G239800--Sobic001G120300 Sobic004G202700 Sobic004G202700 Sobic005G064800--Sobic004G202700 Sobic007G073700 Sobic007G073700 Sobic005G064800--Sobic007G073700 Sobic007G029100 Sobic007G029100 Sobic005G064800--Sobic007G029100 Sobic009G190800 Sobic009G190800 Sobic005G064800--Sobic009G190800 Sobic005G064800--Sobic004G174100 Sobic004G142800 Sobic004G142800 Sobic005G064800--Sobic004G142800 Sobic001G416300 Sobic001G416300 Sobic005G064800--Sobic001G416300 Sobic005G064800--Sobic006G242000 Sobic002G339500 Sobic002G339500 Sobic005G064800--Sobic002G339500 Sobic003G376400--Sobic005G044800 Sobic002G166300 Sobic002G166300 Sobic003G376400--Sobic002G166300 Sobic004G301700 Sobic004G301700 Sobic003G376400--Sobic004G301700 Sobic003G376400--Sobic001G057200 Sobic010G123400 Sobic010G123400 Sobic003G376400--Sobic010G123400 Sobic006G177300 Sobic006G177300 Sobic003G376400--Sobic006G177300 Sobic004G081800 Sobic004G081800 Sobic003G376400--Sobic004G081800 Sobic003G376400--Sobic006G244700 Sobic003G376400--Sobic003G372000 Sobic006G222100--Sobic006G176600 Sobic006G222100--Sobic005G044800 Sobic010G193900 Sobic010G193900 Sobic006G222100--Sobic010G193900 Sobic006G222100--Sobic003G273600 Sobic006G222100--Sobic010G123400 Sobic006G222100--Sobic006G239800 Sobic006G222100--Sobic006G244700 Sobic002G361300 Sobic002G361300 Sobic006G222100--Sobic002G361300 Sobic006G222100--Sobic003G299000 Sobic001G393800 Sobic001G393800 Sobic009G099500--Sobic001G393800 Sobic005G150800 Sobic005G150800 Sobic009G099500--Sobic005G150800 Sobic004G067100 Sobic004G067100 Sobic009G099500--Sobic004G067100 Sobic009G099500--Sobic003G077900 Sobic004G234900 Sobic004G234900 Sobic009G099500--Sobic004G234900 Sobic009G099500--Sobic001G427200 Sobic007G007000 Sobic007G007000 Sobic009G099500--Sobic007G007000 Sobic009G099500--Sobic002G251700 Sobic001G057800 Sobic001G057800 Sobic009G099500--Sobic001G057800 Sobic003G047100 Sobic003G047100 Sobic002G187300--Sobic003G047100 Sobic006G002700 Sobic006G002700 Sobic002G187300--Sobic006G002700 Sobic009G088100 Sobic009G088100 Sobic002G187300--Sobic009G088100 Sobic004G348900 Sobic004G348900 Sobic002G187300--Sobic004G348900 Sobic001G109300 Sobic001G109300 Sobic002G187300--Sobic001G109300 Sobic006G252200 Sobic006G252200 Sobic002G187300--Sobic006G252200 Sobic010G080200 Sobic010G080200 Sobic002G187300--Sobic010G080200 Sobic004G130900 Sobic004G130900 Sobic002G187300--Sobic004G130900 Sobic004G173600 Sobic004G173600 Sobic002G187300--Sobic004G173600
Octagon: transcription factors


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