Gene annotation
Transcriptome id Sobic.004G303700.1
Synonym Sb04g033700
Functional annotation OsPLIM2a - LIM domain protein, putative actin-binding protein and transcription factor, expressed
UniProt C5XSQ0
Pfam PF00412
Panther DB PTHR24206 PTHR24206:SF22
NCBI CDD KOG1700; Regulatory protein MLP and related LIM proteins
KEGG Orthology K09377; cysteine and glycine-rich protein
Gene Ontology GO:0008270; zinc ion binding


Orthologs (automatic annotation)
TAIR AT3G61230 : GATA type zinc finger transcription factor family protein
RAP-DB (Rice) LOC_Os02g42820.1 : OsPLIM2a - LIM domain protein, putative actin-binding protein and transcription factor, expressed
MaizeGDB (Corn) Zm00025a032123 , Zm00025a020988 , Zm00025a056583 , Zm00025a010447
Brachypodium PNT69126 , PNT69127 , KQJ83754
Barley HORVU6Hr1G060580.8 , HORVU6Hr1G060580.3 , HORVU6Hr1G060580.2 , HORVU6Hr1G060580.1 , HORVU6Hr1G060580.7 , HORVU6Hr1G060580.6 , HORVU6Hr1G060580.5 , HORVU6Hr1G060580.4
Wheat TraesCS2D02G367100 , TraesCS6B02G265100 , TraesCS6D02G219200 , TraesCS6A02G236600 , TraesCS2A02G370800 , TraesCS2B02G388000
Populus -


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cDNA sequences
Sobic.004G303700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G161400 polygalacturonase, putative, expressed K01213: galacturan 1,4-alpha-galacturonidase
2 Sobic.002G002600 la domain containing protein, expressed -
3 Sobic.009G098900 rho GDP-dissociation inhibitor 1, putative, expressed K12462: ARHGDI, Rho GDP-dissociation inhibitor
4 Sobic.009G089532 - -
5 Sobic.007G100800 CSLD3 - cellulose synthase-like family D, expressed -
6 Sobic.003G173800 polygalacturonase, putative, expressed -
7 Sobic.005G010000 expressed protein -
8 Sobic.008G186900 SCP-like extracellular protein, expressed -
9 Sobic.003G061700 - -
10 Sobic.001G539700 expansin precursor, putative, expressed -
11 Sobic.008G028100 pollen allergen, putative, expressed -
12 Sobic.008G028300 pollen allergen, putative, expressed -
13 Sobic.004G137200 fasciclin-like arabinogalactan precursor protein, putative, expressed -
14 Sobic.002G106800 expressed protein -
15 Sobic.003G127200 phosphatidylinositol kinase, putative, expressed -
16 Sobic.004G025500 - -
17 Sobic.002G140500 POEI23 - Pollen Ole e I allergen and extensin family protein precursor, expressed -
18 Sobic.009G096700 Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.20 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
19 Sobic.003G438500 THION25 - Plant thionin family protein precursor, expressed -
20 Sobic.009G016700 glyceraldehyde-3-phosphate dehydrogenase, putative, expressed K00134: GAPDH, glyceraldehyde 3-phosphate dehydrogenase


Gene co-expression network
sample Sobic004G303700 Sobic004G303700 Sobic010G161400 Sobic010G161400 Sobic004G303700--Sobic010G161400 Sobic002G002600 Sobic002G002600 Sobic004G303700--Sobic002G002600 Sobic009G098900 Sobic009G098900 Sobic004G303700--Sobic009G098900 Sobic009G089532 Sobic009G089532 Sobic004G303700--Sobic009G089532 Sobic007G100800 Sobic007G100800 Sobic004G303700--Sobic007G100800 Sobic003G173800 Sobic003G173800 Sobic004G303700--Sobic003G173800 Sobic005G010000 Sobic005G010000 Sobic004G303700--Sobic005G010000 Sobic008G186900 Sobic008G186900 Sobic004G303700--Sobic008G186900 Sobic003G061700 Sobic003G061700 Sobic004G303700--Sobic003G061700 Sobic010G161400--Sobic008G186900 Sobic010G161400--Sobic009G098900 Sobic010G161400--Sobic003G173800 Sobic010G161400--Sobic002G002600 Sobic010G161400--Sobic007G100800 Sobic010G161400--Sobic005G010000 Sobic008G028300 Sobic008G028300 Sobic010G161400--Sobic008G028300 Sobic010G161400--Sobic003G061700 Sobic002G106800 Sobic002G106800 Sobic010G161400--Sobic002G106800 Sobic002G002600--Sobic008G028300 Sobic001G539700 Sobic001G539700 Sobic002G002600--Sobic001G539700 Sobic008G028100 Sobic008G028100 Sobic002G002600--Sobic008G028100 Sobic002G002600--Sobic009G089532 Sobic002G002600--Sobic010G161400 Sobic009G016700 Sobic009G016700 Sobic002G002600--Sobic009G016700 Sobic010G093600 Sobic010G093600 Sobic002G002600--Sobic010G093600 Sobic009G096700 Sobic009G096700 Sobic002G002600--Sobic009G096700 Sobic003G127200 Sobic003G127200 Sobic002G002600--Sobic003G127200 Sobic009G098900--Sobic003G173800 Sobic004G025500 Sobic004G025500 Sobic009G098900--Sobic004G025500 Sobic009G098900--Sobic010G161400 Sobic009G098900--Sobic002G106800 Sobic009G098900--Sobic009G089532 Sobic004G137200 Sobic004G137200 Sobic009G098900--Sobic004G137200 Sobic009G098900--Sobic005G010000 Sobic009G098900--Sobic001G539700 Sobic009G098900--Sobic002G002600 Sobic009G089532--Sobic001G539700 Sobic009G089532--Sobic008G028100 Sobic009G089532--Sobic002G002600 Sobic009G089532--Sobic009G096700 Sobic009G089532--Sobic009G098900 Sobic009G089532--Sobic010G093600 Sobic009G089532--Sobic004G137200 Sobic009G089532--Sobic009G016700 Sobic009G089532--Sobic008G028300 Sobic007G100800--Sobic003G061700 Sobic007G100800--Sobic008G186900 Sobic007G100800--Sobic005G010000 Sobic007G100800--Sobic010G161400 Sobic007G100800--Sobic003G127200 Sobic007G100800--Sobic003G173800 Sobic007G100800--Sobic002G002600 Sobic007G100800--Sobic009G098900 Sobic007G100800--Sobic008G028300 Sobic003G173800--Sobic005G010000 Sobic003G173800--Sobic002G106800 Sobic003G173800--Sobic009G098900 Sobic003G173800--Sobic010G161400 Sobic003G173800--Sobic008G186900 Sobic003G173800--Sobic004G137200 Sobic002G091200 Sobic002G091200 Sobic003G173800--Sobic002G091200 Sobic003G173800--Sobic007G100800 Sobic003G173800--Sobic003G061700 Sobic005G010000--Sobic003G173800 Sobic005G010000--Sobic002G106800 Sobic005G010000--Sobic007G100800 Sobic005G010000--Sobic003G061700 Sobic005G010000--Sobic008G186900 Sobic005G010000--Sobic010G161400 Sobic005G010000--Sobic009G098900 Sobic005G010000--Sobic004G137200 Sobic005G010000--Sobic002G091200 Sobic008G186900--Sobic007G100800 Sobic008G186900--Sobic010G161400 Sobic008G186900--Sobic003G061700 Sobic008G186900--Sobic005G010000 Sobic008G186900--Sobic003G173800 Sobic008G186900--Sobic002G002600 Sobic008G186900--Sobic003G127200 Sobic008G186900--Sobic009G098900 Sobic008G186900--Sobic008G028300 Sobic003G061700--Sobic007G100800 Sobic003G061700--Sobic008G186900 Sobic003G061700--Sobic005G010000 Sobic003G061700--Sobic010G161400 Sobic003G061700--Sobic003G173800 Sobic003G061700--Sobic003G127200 Sobic003G061700--Sobic002G002600 Sobic002G351500 Sobic002G351500 Sobic003G061700--Sobic002G351500 Sobic003G061700--Sobic009G098900
Octagon: transcription factors


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