Gene annotation
Transcriptome id Sobic.004G312300.2,Sobic.004G312300.1
Synonym Sb04g034450
Functional annotation expressed protein
UniProt C5XSY2
Pfam PF07800
Panther DB PTHR31197 PTHR31197:SF12
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G68140 : Protein of unknown function (DUF1644)
RAP-DB (Rice) LOC_Os02g53110.1 : expressed protein
MaizeGDB (Corn) Zm00025a022254 , Zm00025a033074
Brachypodium KQK01705 , KQK01706
Barley HORVU6Hr1G079720.1 , HORVU6Hr1G079720.3 , HORVU6Hr1G079720.2
Wheat -
Populus -


JBrowse

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cDNA sequences
Sobic.004G312300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G220900 autophagy-related protein, putative, expressed K08341: GABARAP, ATG8, GABA(A) receptor-associated protein
2 Sobic.007G096700 POEI30 - Pollen Ole e I allergen and extensin family protein precursor, expressed -
3 Sobic.002G363100 eukaryotic translation initiation factor 5A, putative, expressed K03263: translation initiation factor 5A
4 Sobic.008G032600 saposin-like type B, region 1 family protein, putative, expressed K12382: PSAP, saposin
5 Sobic.004G327300 TMS membrane protein/tumour differentially expressed protein, putative, expressed -
6 Sobic.004G082900 26S protease regulatory subunit, putative, expressed K03064: PSMC6, 26S proteasome regulatory subunit T4
7 Sobic.001G388600 histidine triad family protein, putative, expressed K02503: HINT1, hinT, histidine triad (HIT) family protein
8 Sobic.001G058100 thioredoxin, putative, expressed -
9 Sobic.001G219300 lactate/malate dehydrogenase, putative, expressed K00025: malate dehydrogenase
10 Sobic.004G130900 seven in absentia protein family domain containing protein, expressed K04506: E3 ubiquitin-protein ligase SIAH1
11 Sobic.001G501200 ras-related protein, putative, expressed K07889: Ras-related protein Rab-5C
12 Sobic.003G440800 vacuolar protein sorting 55 family protein, putative, expressed -
13 Sobic.003G349300 serine/threonine-protein kinase AFC1, putative, expressed K08287: dual-specificity kinase
14 Sobic.001G005900 PPR repeat domain containing protein, putative, expressed -
15 Sobic.009G217900 expressed protein K06875: PDCD5, programmed cell death protein 5
16 Sobic.004G130100 ubiquitin-conjugating enzyme, putative, expressed K10704: ubiquitin-conjugating enzyme E2 variant
17 Sobic.001G158500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@LSD1 zinc finger domain containing protein, expressed -
18 Sobic.009G005900 actin, putative, expressed K10355: actin, other eukaryote
19 Sobic.006G002201 - -
20 Sobic.006G252200 MEE34, putative, expressed K03038: PSMD7, 26S proteasome regulatory subunit N8


Gene co-expression network
sample Sobic004G312300 Sobic004G312300 Sobic006G220900 Sobic006G220900 Sobic004G312300--Sobic006G220900 Sobic007G096700 Sobic007G096700 Sobic004G312300--Sobic007G096700 Sobic002G363100 Sobic002G363100 Sobic004G312300--Sobic002G363100 Sobic008G032600 Sobic008G032600 Sobic004G312300--Sobic008G032600 Sobic004G327300 Sobic004G327300 Sobic004G312300--Sobic004G327300 Sobic004G082900 Sobic004G082900 Sobic004G312300--Sobic004G082900 Sobic001G388600 Sobic001G388600 Sobic004G312300--Sobic001G388600 Sobic001G058100 Sobic001G058100 Sobic004G312300--Sobic001G058100 Sobic001G219300 Sobic001G219300 Sobic004G312300--Sobic001G219300 Sobic006G220900--Sobic001G058100 Sobic001G289400 Sobic001G289400 Sobic006G220900--Sobic001G289400 Sobic001G026900 Sobic001G026900 Sobic006G220900--Sobic001G026900 Sobic004G276100 Sobic004G276100 Sobic006G220900--Sobic004G276100 Sobic004G335000 Sobic004G335000 Sobic006G220900--Sobic004G335000 Sobic008G179500 Sobic008G179500 Sobic006G220900--Sobic008G179500 Sobic002G083266 Sobic002G083266 Sobic006G220900--Sobic002G083266 Sobic004G301400 Sobic004G301400 Sobic006G220900--Sobic004G301400 Sobic006G220900--Sobic007G096700 Sobic009G198500 Sobic009G198500 Sobic007G096700--Sobic009G198500 Sobic007G096700--Sobic004G327300 Sobic009G122100 Sobic009G122100 Sobic007G096700--Sobic009G122100 Sobic001G501200 Sobic001G501200 Sobic007G096700--Sobic001G501200 Sobic001G005900 Sobic001G005900 Sobic007G096700--Sobic001G005900 Sobic002G400000 Sobic002G400000 Sobic007G096700--Sobic002G400000 Sobic004G130900 Sobic004G130900 Sobic007G096700--Sobic004G130900 Sobic001G175800 Sobic001G175800 Sobic007G096700--Sobic001G175800 Sobic004G300900 Sobic004G300900 Sobic007G096700--Sobic004G300900 Sobic009G240900 Sobic009G240900 Sobic002G363100--Sobic009G240900 Sobic001G040800 Sobic001G040800 Sobic002G363100--Sobic001G040800 Sobic009G001400 Sobic009G001400 Sobic002G363100--Sobic009G001400 Sobic001G357300 Sobic001G357300 Sobic002G363100--Sobic001G357300 Sobic007G114200 Sobic007G114200 Sobic002G363100--Sobic007G114200 Sobic009G217900 Sobic009G217900 Sobic002G363100--Sobic009G217900 Sobic002G363100--Sobic001G005900 Sobic004G130100 Sobic004G130100 Sobic002G363100--Sobic004G130100 Sobic002G363100--Sobic004G327300 Sobic010G049100 Sobic010G049100 Sobic008G032600--Sobic010G049100 Sobic008G156700 Sobic008G156700 Sobic008G032600--Sobic008G156700 Sobic004G080100 Sobic004G080100 Sobic008G032600--Sobic004G080100 Sobic009G133600 Sobic009G133600 Sobic008G032600--Sobic009G133600 Sobic005G168600 Sobic005G168600 Sobic008G032600--Sobic005G168600 Sobic003G110400 Sobic003G110400 Sobic008G032600--Sobic003G110400 Sobic003G055700 Sobic003G055700 Sobic008G032600--Sobic003G055700 Sobic006G244700 Sobic006G244700 Sobic008G032600--Sobic006G244700 Sobic008G033500 Sobic008G033500 Sobic008G032600--Sobic008G033500 Sobic003G367451 Sobic003G367451 Sobic004G327300--Sobic003G367451 Sobic004G327300--Sobic001G005900 Sobic004G327300--Sobic007G096700 Sobic004G327300--Sobic002G400000 Sobic004G327300--Sobic004G130900 Sobic001G461900 Sobic001G461900 Sobic004G327300--Sobic001G461900 Sobic009G174900 Sobic009G174900 Sobic004G327300--Sobic009G174900 Sobic004G327300--Sobic009G198500 Sobic004G327300--Sobic007G114200 Sobic006G252200 Sobic006G252200 Sobic004G082900--Sobic006G252200 Sobic001G283200 Sobic001G283200 Sobic004G082900--Sobic001G283200 Sobic001G458700 Sobic001G458700 Sobic004G082900--Sobic001G458700 Sobic004G010900 Sobic004G010900 Sobic004G082900--Sobic004G010900 Sobic007G176200 Sobic007G176200 Sobic004G082900--Sobic007G176200 Sobic005G105500 Sobic005G105500 Sobic004G082900--Sobic005G105500 Sobic001G145500 Sobic001G145500 Sobic004G082900--Sobic001G145500 Sobic009G149500 Sobic009G149500 Sobic004G082900--Sobic009G149500 Sobic001G444300 Sobic001G444300 Sobic004G082900--Sobic001G444300 Sobic001G478000 Sobic001G478000 Sobic001G388600--Sobic001G478000 Sobic001G388600--Sobic004G130100 Sobic001G388600--Sobic004G327300 Sobic001G388600--Sobic002G363100 Sobic002G371100 Sobic002G371100 Sobic001G388600--Sobic002G371100 Sobic001G388600--Sobic001G005900 Sobic004G099900 Sobic004G099900 Sobic001G388600--Sobic004G099900 Sobic007G152400 Sobic007G152400 Sobic001G388600--Sobic007G152400 Sobic003G216500 Sobic003G216500 Sobic001G388600--Sobic003G216500 Sobic001G236300 Sobic001G236300 Sobic001G058100--Sobic001G236300 Sobic001G058100--Sobic004G335000 Sobic002G257400 Sobic002G257400 Sobic001G058100--Sobic002G257400 Sobic001G058100--Sobic006G252200 Sobic010G044200 Sobic010G044200 Sobic001G058100--Sobic010G044200 Sobic001G058100--Sobic001G289400 Sobic003G104700 Sobic003G104700 Sobic001G058100--Sobic003G104700 Sobic001G058100--Sobic006G220900 Sobic001G058100--Sobic002G083266 Sobic002G111200 Sobic002G111200 Sobic001G219300--Sobic002G111200 Sobic001G219300--Sobic004G080100 Sobic001G219300--Sobic003G055700 Sobic001G219300--Sobic010G049100 Sobic009G257600 Sobic009G257600 Sobic001G219300--Sobic009G257600 Sobic001G014800 Sobic001G014800 Sobic001G219300--Sobic001G014800 Sobic009G005900 Sobic009G005900 Sobic001G219300--Sobic009G005900 Sobic001G219300--Sobic006G244700 Sobic001G219300--Sobic008G032600
Octagon: transcription factors


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