Gene annotation
Transcriptome id Sobic.005G044400.2,Sobic.005G044400.1
Synonym APRR9, PRR9, TL1, Sb05g003660
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
response regulator receiver domain containing protein, expressed
UniProt A0A1Z5RGM8 , C5Y541
Pfam PF06203 PF00072 PF00072 PF06203
Panther DB PTHR26402 PTHR26402:SF560
NCBI CDD -
KEGG Orthology K12130; pseudo-response regulator 5
Gene Ontology GO:0005515; protein binding GO:0000160phosphorelay signal transduction system GO:0000160phosphorelay signal transduction system GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT5G24470 : pseudo-response regulator 5,pseudo-response regulator 9
RAP-DB (Rice) LOC_Os11g05930.1,LOC_Os11g05930.3 : response regulator receiver domain containing protein, expressed
MaizeGDB (Corn) Zm00025a012951 , Zm00025a047786 , Zm00025a033684
Brachypodium KQJ89340 , KQJ89341
Barley HORVU4Hr1G021010.1 , HORVU4Hr1G021010.2 , HORVU4Hr1G021010.3 , HORVU4Hr1G021000.7 , HORVU4Hr1G021000.6 , HORVU4Hr1G021000.4 , HORVU4Hr1G021000.3 , HORVU4Hr1G021000.2 , HORVU4Hr1G021000.5
Wheat TraesCS4A02G200200 , TraesCS4D02G112800 , TraesCS4B02G115100 , TraesCS4B02G115100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G103200 pex14, putative, expressed K13343: peroxin-14
2 Sobic.002G181300 expressed protein -
3 Sobic.003G054200 thioredoxin, putative, expressed K03671: thioredoxin 1
4 Sobic.007G110200 wound responsive protein, putative, expressed -
5 Sobic.004G181700 calmodulin binding protein, putative, expressed -
6 Sobic.010G207500 homeobox protein knotted-1, putative, expressed -
7 Sobic.004G317100 DENN domain containing protein, expressed -
8 Sobic.002G125900 ORM1, putative, expressed -
9 Sobic.002G137300 oxidoreductase, short chain dehydrogenase/reductase family domain containing family, expressed -
10 Sobic.006G119800 leucine rich repeat containing protein, expressed -
11 Sobic.001G208300 Ser/Thr protein phosphatase family protein, putative, expressed -
12 Sobic.010G030300 serine threonine kinase, putative, expressed -
13 Sobic.004G210900 auxin efflux carrier component, putative, expressed -
14 Sobic.008G146900 "similar to Leucine Rich Repeat family protein, expressed"(PubMedID : 29862293)@disease resistance protein, putative, expressed -
15 Sobic.001G418800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@N-acetylglucosaminyltransferase, putative, expressed -
16 Sobic.006G024500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CBS domain containing membrane protein, putative, expressed -
17 Sobic.007G065100 XRN 5\'-3\' exonuclease N-terminus domain containing protein, expressed K12619: XRN2, 5'-3' exoribonuclease 2
18 Sobic.002G404200 F-box domain containing protein, expressed -
19 Sobic.004G189900 BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed K13418: somatic embryogenesis receptor kinase 1
20 Sobic.010G184600 Homologous to Arabidopsis heme oxygenase 1 (AtHO1)(PubMedID : 11402195)@heme oxygenase 1, putative, expressed K00510: heme oxygenase 1


Gene co-expression network
sample Sobic005G044400 Sobic005G044400 Sobic003G103200 Sobic003G103200 Sobic005G044400--Sobic003G103200 Sobic002G181300 Sobic002G181300 Sobic005G044400--Sobic002G181300 Sobic003G054200 Sobic003G054200 Sobic005G044400--Sobic003G054200 Sobic007G110200 Sobic007G110200 Sobic005G044400--Sobic007G110200 Sobic004G181700 Sobic004G181700 Sobic005G044400--Sobic004G181700 Sobic010G207500 Sobic010G207500 Sobic005G044400--Sobic010G207500 Sobic004G317100 Sobic004G317100 Sobic005G044400--Sobic004G317100 Sobic002G125900 Sobic002G125900 Sobic005G044400--Sobic002G125900 Sobic002G137300 Sobic002G137300 Sobic005G044400--Sobic002G137300 Sobic009G190800 Sobic009G190800 Sobic003G103200--Sobic009G190800 Sobic003G103200--Sobic002G137300 Sobic006G024500 Sobic006G024500 Sobic003G103200--Sobic006G024500 Sobic008G081300 Sobic008G081300 Sobic003G103200--Sobic008G081300 Sobic003G103200--Sobic005G044400 Sobic008G193300 Sobic008G193300 Sobic003G103200--Sobic008G193300 Sobic009G141400 Sobic009G141400 Sobic003G103200--Sobic009G141400 Sobic003G103200--Sobic002G181300 Sobic008G144800 Sobic008G144800 Sobic003G103200--Sobic008G144800 Sobic007G065100 Sobic007G065100 Sobic002G181300--Sobic007G065100 Sobic002G181300--Sobic004G317100 Sobic004G131040 Sobic004G131040 Sobic002G181300--Sobic004G131040 Sobic002G181300--Sobic004G181700 Sobic002G425700 Sobic002G425700 Sobic002G181300--Sobic002G425700 Sobic002G276100 Sobic002G276100 Sobic002G181300--Sobic002G276100 Sobic010G000600 Sobic010G000600 Sobic002G181300--Sobic010G000600 Sobic001G498600 Sobic001G498600 Sobic002G181300--Sobic001G498600 Sobic002G181300--Sobic005G044400 Sobic003G071000 Sobic003G071000 Sobic003G054200--Sobic003G071000 Sobic002G309800 Sobic002G309800 Sobic003G054200--Sobic002G309800 Sobic002G242200 Sobic002G242200 Sobic003G054200--Sobic002G242200 Sobic001G108900 Sobic001G108900 Sobic003G054200--Sobic001G108900 Sobic006G252300 Sobic006G252300 Sobic003G054200--Sobic006G252300 Sobic003G054200--Sobic002G125900 Sobic005G160400 Sobic005G160400 Sobic003G054200--Sobic005G160400 Sobic003G054200--Sobic005G044400 Sobic010G082700 Sobic010G082700 Sobic003G054200--Sobic010G082700 Sobic010G258300 Sobic010G258300 Sobic007G110200--Sobic010G258300 Sobic008G073900 Sobic008G073900 Sobic007G110200--Sobic008G073900 Sobic007G110200--Sobic010G000600 Sobic007G205600 Sobic007G205600 Sobic007G110200--Sobic007G205600 Sobic003G222300 Sobic003G222300 Sobic007G110200--Sobic003G222300 Sobic001G031300 Sobic001G031300 Sobic007G110200--Sobic001G031300 Sobic003G222600 Sobic003G222600 Sobic007G110200--Sobic003G222600 Sobic009G154600 Sobic009G154600 Sobic007G110200--Sobic009G154600 Sobic006G220600 Sobic006G220600 Sobic007G110200--Sobic006G220600 Sobic004G181700--Sobic004G317100 Sobic004G181700--Sobic002G276100 Sobic001G159400 Sobic001G159400 Sobic004G181700--Sobic001G159400 Sobic004G181600 Sobic004G181600 Sobic004G181700--Sobic004G181600 Sobic008G146900 Sobic008G146900 Sobic004G181700--Sobic008G146900 Sobic001G191600 Sobic001G191600 Sobic004G181700--Sobic001G191600 Sobic009G097200 Sobic009G097200 Sobic004G181700--Sobic009G097200 Sobic006G086500 Sobic006G086500 Sobic004G181700--Sobic006G086500 Sobic008G172300 Sobic008G172300 Sobic004G181700--Sobic008G172300 Sobic002G025700 Sobic002G025700 Sobic010G207500--Sobic002G025700 Sobic006G201100 Sobic006G201100 Sobic010G207500--Sobic006G201100 Sobic004G300000 Sobic004G300000 Sobic010G207500--Sobic004G300000 Sobic002G362100 Sobic002G362100 Sobic010G207500--Sobic002G362100 Sobic002G046900 Sobic002G046900 Sobic010G207500--Sobic002G046900 Sobic010G035500 Sobic010G035500 Sobic010G207500--Sobic010G035500 Sobic004G164200 Sobic004G164200 Sobic010G207500--Sobic004G164200 Sobic010G207500--Sobic009G141400 Sobic001G351400 Sobic001G351400 Sobic010G207500--Sobic001G351400 Sobic004G317100--Sobic004G181700 Sobic004G317100--Sobic001G498600 Sobic003G359600 Sobic003G359600 Sobic004G317100--Sobic003G359600 Sobic007G193700 Sobic007G193700 Sobic004G317100--Sobic007G193700 Sobic004G317100--Sobic001G159400 Sobic010G256700 Sobic010G256700 Sobic004G317100--Sobic010G256700 Sobic001G365900 Sobic001G365900 Sobic004G317100--Sobic001G365900 Sobic010G112000 Sobic010G112000 Sobic004G317100--Sobic010G112000 Sobic002G173000 Sobic002G173000 Sobic004G317100--Sobic002G173000 Sobic006G263000 Sobic006G263000 Sobic002G125900--Sobic006G263000 Sobic007G120401 Sobic007G120401 Sobic002G125900--Sobic007G120401 Sobic002G125900--Sobic001G351400 Sobic002G404200 Sobic002G404200 Sobic002G125900--Sobic002G404200 Sobic002G040800 Sobic002G040800 Sobic002G125900--Sobic002G040800 Sobic002G125900--Sobic003G222300 Sobic002G125900--Sobic008G146900 Sobic004G210900 Sobic004G210900 Sobic002G125900--Sobic004G210900 Sobic003G314500 Sobic003G314500 Sobic002G125900--Sobic003G314500 Sobic001G029200 Sobic001G029200 Sobic002G137300--Sobic001G029200 Sobic002G137300--Sobic010G035500 Sobic002G137300--Sobic003G103200 Sobic002G137300--Sobic009G141400 Sobic003G306700 Sobic003G306700 Sobic002G137300--Sobic003G306700 Sobic002G137300--Sobic008G081300 Sobic002G137300--Sobic006G201100 Sobic006G269000 Sobic006G269000 Sobic002G137300--Sobic006G269000 Sobic004G163200 Sobic004G163200 Sobic002G137300--Sobic004G163200
Octagon: transcription factors


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