Gene annotation
Transcriptome id Sobic.005G180700.1
Synonym Sb05g023940
Functional annotation zinc finger, C3HC4 type family protein, expressed
UniProt C5Y5Y5
Pfam PF12906
Panther DB PTHR23012 PTHR23012:SF50
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding


Orthologs (automatic annotation)
TAIR AT2G22120 : RING/FYVE/PHD zinc finger superfamily protein
RAP-DB (Rice) LOC_Os11g39130.1 : zinc finger, C3HC4 type family protein, expressed
MaizeGDB (Corn) Zm00025a015866 , Zm00025a029427
Brachypodium KQJ87880
Barley HORVU4Hr1G038060.3 , HORVU4Hr1G038060.2 , HORVU4Hr1G038060.1 , HORVU4Hr1G038060.4
Wheat TraesCS4D02G152900 , TraesCS4B02G164000 , TraesCS4A02G156600 , TraesCS4A02G156600
Populus -


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cDNA sequences
Sobic.005G180700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G174800 OsPP2Ac-1 - Phosphatase 2A isoform 1 belonging to family 1, expressed K04382: serine/threonine-protein phosphatase 2A catalytic subunit
2 Sobic.003G273500 expressed protein -
3 Sobic.001G028400 domain of unknown function domain containing protein, expressed -
4 Sobic.003G185200 chaperone protein dnaJ 49, putative, expressed K09518: DnaJ homolog subfamily B member 12
5 Sobic.008G192000 yippee zinc-binding protein, putative, expressed -
6 Sobic.001G061700 "similar to BTB/POZ domain containing protein, expressed"(PubMedID : 29862293)@MBTB3 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
7 Sobic.010G074900 G protein coupled receptor, putative, expressed -
8 Sobic.006G267300 expressed protein -
9 Sobic.001G390500 SNF1-related protein kinase regulatory subunit beta-1, putative, expressed K07199: 5'-AMP-activated protein kinase, regulatory beta subunit
10 Sobic.004G263900 RNA-binding motif protein, putative, expressed K12872: RBM22, pre-mRNA-splicing factor RBM22/SLT11
11 Sobic.002G084300 ras-related protein, putative, expressed K07901: RAB8A, Ras-related protein Rab-8A
12 Sobic.003G084750 - -
13 Sobic.003G205501 - -
14 Sobic.010G055500 RNA-binding motif protein, putative, expressed K12872: RBM22, pre-mRNA-splicing factor RBM22/SLT11
15 Sobic.004G015800 zinc carboxypeptidase family protein, putative, expressed -
16 Sobic.002G365100 RNA recognition motif containing protein, putative, expressed -
17 Sobic.010G105600 RNA recognition motif containing protein, putative, expressed K12881: THOC4, THO complex subunit 4
18 Sobic.010G211300 protein phosphatase 2C, putative, expressed K17499: PPM1G, protein phosphatase 1G
19 Sobic.006G254600 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
20 Sobic.003G389800 nucleotide-sugar transporter family protein, putative, expressed -


Gene co-expression network
sample Sobic005G180700 Sobic005G180700 Sobic010G174800 Sobic010G174800 Sobic005G180700--Sobic010G174800 Sobic003G273500 Sobic003G273500 Sobic005G180700--Sobic003G273500 Sobic001G028400 Sobic001G028400 Sobic005G180700--Sobic001G028400 Sobic003G185200 Sobic003G185200 Sobic005G180700--Sobic003G185200 Sobic008G192000 Sobic008G192000 Sobic005G180700--Sobic008G192000 Sobic001G061700 Sobic001G061700 Sobic005G180700--Sobic001G061700 Sobic010G074900 Sobic010G074900 Sobic005G180700--Sobic010G074900 Sobic006G267300 Sobic006G267300 Sobic005G180700--Sobic006G267300 Sobic001G390500 Sobic001G390500 Sobic005G180700--Sobic001G390500 Sobic003G248500 Sobic003G248500 Sobic010G174800--Sobic003G248500 Sobic006G128800 Sobic006G128800 Sobic010G174800--Sobic006G128800 Sobic010G174800--Sobic003G185200 Sobic003G359300 Sobic003G359300 Sobic010G174800--Sobic003G359300 Sobic006G130200 Sobic006G130200 Sobic010G174800--Sobic006G130200 Sobic003G336800 Sobic003G336800 Sobic010G174800--Sobic003G336800 Sobic004G263900 Sobic004G263900 Sobic010G174800--Sobic004G263900 Sobic010G174800--Sobic001G390500 Sobic010G174800--Sobic001G028400 Sobic003G187200 Sobic003G187200 Sobic003G273500--Sobic003G187200 Sobic004G286500 Sobic004G286500 Sobic003G273500--Sobic004G286500 Sobic004G323700 Sobic004G323700 Sobic003G273500--Sobic004G323700 Sobic003G273500--Sobic001G061700 Sobic006G163800 Sobic006G163800 Sobic003G273500--Sobic006G163800 Sobic004G226600 Sobic004G226600 Sobic003G273500--Sobic004G226600 Sobic006G008600 Sobic006G008600 Sobic003G273500--Sobic006G008600 Sobic003G119700 Sobic003G119700 Sobic003G273500--Sobic003G119700 Sobic003G273500--Sobic010G074900 Sobic010G033400 Sobic010G033400 Sobic001G028400--Sobic010G033400 Sobic007G063200 Sobic007G063200 Sobic001G028400--Sobic007G063200 Sobic001G056200 Sobic001G056200 Sobic001G028400--Sobic001G056200 Sobic001G028400--Sobic004G263900 Sobic001G028400--Sobic003G359300 Sobic007G205000 Sobic007G205000 Sobic001G028400--Sobic007G205000 Sobic003G437500 Sobic003G437500 Sobic001G028400--Sobic003G437500 Sobic007G118200 Sobic007G118200 Sobic001G028400--Sobic007G118200 Sobic010G211300 Sobic010G211300 Sobic001G028400--Sobic010G211300 Sobic002G365100 Sobic002G365100 Sobic003G185200--Sobic002G365100 Sobic003G185200--Sobic010G174800 Sobic003G185200--Sobic003G248500 Sobic010G202600 Sobic010G202600 Sobic003G185200--Sobic010G202600 Sobic003G261300 Sobic003G261300 Sobic003G185200--Sobic003G261300 Sobic010G000700 Sobic010G000700 Sobic003G185200--Sobic010G000700 Sobic003G185200--Sobic006G128800 Sobic003G185200--Sobic004G263900 Sobic003G185200--Sobic003G336800 Sobic002G084300 Sobic002G084300 Sobic008G192000--Sobic002G084300 Sobic006G254600 Sobic006G254600 Sobic008G192000--Sobic006G254600 Sobic008G192000--Sobic001G028400 Sobic006G175400 Sobic006G175400 Sobic008G192000--Sobic006G175400 Sobic009G198100 Sobic009G198100 Sobic008G192000--Sobic009G198100 Sobic008G192000--Sobic001G390500 Sobic008G192000--Sobic010G033400 Sobic008G192000--Sobic007G205000 Sobic001G512900 Sobic001G512900 Sobic008G192000--Sobic001G512900 Sobic004G059000 Sobic004G059000 Sobic001G061700--Sobic004G059000 Sobic002G272600 Sobic002G272600 Sobic001G061700--Sobic002G272600 Sobic003G350600 Sobic003G350600 Sobic001G061700--Sobic003G350600 Sobic001G061700--Sobic007G205000 Sobic001G061700--Sobic002G365100 Sobic010G105600 Sobic010G105600 Sobic001G061700--Sobic010G105600 Sobic001G061700--Sobic003G273500 Sobic001G061700--Sobic001G028400 Sobic002G378200 Sobic002G378200 Sobic001G061700--Sobic002G378200 Sobic004G345700 Sobic004G345700 Sobic010G074900--Sobic004G345700 Sobic003G205501 Sobic003G205501 Sobic010G074900--Sobic003G205501 Sobic001G408700 Sobic001G408700 Sobic010G074900--Sobic001G408700 Sobic001G193100 Sobic001G193100 Sobic010G074900--Sobic001G193100 Sobic004G084500 Sobic004G084500 Sobic010G074900--Sobic004G084500 Sobic006G091000 Sobic006G091000 Sobic010G074900--Sobic006G091000 Sobic005G040900 Sobic005G040900 Sobic010G074900--Sobic005G040900 Sobic004G007300 Sobic004G007300 Sobic010G074900--Sobic004G007300 Sobic003G398400 Sobic003G398400 Sobic010G074900--Sobic003G398400 Sobic007G111100 Sobic007G111100 Sobic006G267300--Sobic007G111100 Sobic009G257800 Sobic009G257800 Sobic006G267300--Sobic009G257800 Sobic006G267300--Sobic003G205501 Sobic006G267300--Sobic001G408700 Sobic009G195200 Sobic009G195200 Sobic006G267300--Sobic009G195200 Sobic006G267300--Sobic007G118200 Sobic006G267300--Sobic010G202600 Sobic003G433500 Sobic003G433500 Sobic006G267300--Sobic003G433500 Sobic008G127400 Sobic008G127400 Sobic006G267300--Sobic008G127400 Sobic001G083600 Sobic001G083600 Sobic001G390500--Sobic001G083600 Sobic001G390500--Sobic003G248500 Sobic010G055500 Sobic010G055500 Sobic001G390500--Sobic010G055500 Sobic001G390500--Sobic007G111100 Sobic001G390500--Sobic004G263900 Sobic003G189900 Sobic003G189900 Sobic001G390500--Sobic003G189900 Sobic001G390500--Sobic010G174800 Sobic010G071200 Sobic010G071200 Sobic001G390500--Sobic010G071200 Sobic001G390500--Sobic002G084300
Octagon: transcription factors


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