Gene annotation
Transcriptome id Sobic.005G180800.1,Sobic.005G180800.2
Synonym Sb05g023950, PLP3a
Functional annotation thioredoxin domain-containing protein 9, putative, expressed
UniProt C5Y5X8 , A0A1B6PT97
Pfam PF00085
Panther DB PTHR21148 PTHR21148:SF25
NCBI CDD KOG1672; ATP binding protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G50960 : phosducin-like protein 3 homolog
RAP-DB (Rice) LOC_Os05g16630.1 : thioredoxin domain-containing protein 9, putative, expressed
MaizeGDB (Corn) Zm00025a015868 , Zm00025a029426
Brachypodium KQJ87881
Barley HORVU7Hr1G029120.1
Wheat TraesCS7B02G044100
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G415100 BTBM1 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed -
2 Sobic.002G103700 - -
3 Sobic.001G218200 expressed protein -
4 Sobic.006G261100 UBX domain-containing protein, putative, expressed -
5 Sobic.009G166200 tentative name(PubMedID : 31536532)@histone-like transcription factor and archaeal histone, putative, expressed K08065: NFYB, nuclear transcription Y subunit beta
6 Sobic.004G313300 expressed protein -
7 Sobic.001G384600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@endoglucanase, putative, expressed -
8 Sobic.005G032400 ASH-like SPRY domain containing protein, putative, expressed K14964: Set1/Ash2 histone methyltransferase complex subunit ASH2
9 Sobic.002G247200 jmjC domain-containing protein 5, putative, expressed K10277: KDM8, lysine-specific demethylase 8
10 Sobic.002G362300 prefoldin, putative, expressed -
11 Sobic.008G169800 galactosyltransferase family protein, putative, expressed -
12 Sobic.009G194700 IQ calmodulin-binding motif family protein, putative, expressed -
13 Sobic.004G345100 expressed protein -
14 Sobic.004G250900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@aldehyde dehydrogenase, putative, expressed K00128: aldehyde dehydrogenase (NAD+)
15 Sobic.006G250100 tRNA-specific adenosine deaminase 1, putative, expressed K15440: TAD1, tRNA-specific adenosine deaminase 1
16 Sobic.001G116100 threonine dehydratase biosynthetic, chloroplast precursor, putative, expressed K01754: E4.3.1.19, ilvA, threonine dehydratase
17 Sobic.004G242000 ras-related protein, putative, expressed K04392: Ras-related C3 botulinum toxin substrate 1
18 Sobic.002G347700 expressed protein -
19 Sobic.002G252900 DNA repair ATPase-related, putative, expressed -
20 Sobic.006G096300 oxidoreductase, aldo/keto reductase family protein, putative, expressed -


Gene co-expression network
sample Sobic005G180800 Sobic005G180800 Sobic003G415100 Sobic003G415100 Sobic005G180800--Sobic003G415100 Sobic002G103700 Sobic002G103700 Sobic005G180800--Sobic002G103700 Sobic001G218200 Sobic001G218200 Sobic005G180800--Sobic001G218200 Sobic006G261100 Sobic006G261100 Sobic005G180800--Sobic006G261100 Sobic009G166200 Sobic009G166200 Sobic005G180800--Sobic009G166200 Sobic004G313300 Sobic004G313300 Sobic005G180800--Sobic004G313300 Sobic001G384600 Sobic001G384600 Sobic005G180800--Sobic001G384600 Sobic005G032400 Sobic005G032400 Sobic005G180800--Sobic005G032400 Sobic002G247200 Sobic002G247200 Sobic005G180800--Sobic002G247200 Sobic001G346700 Sobic001G346700 Sobic003G415100--Sobic001G346700 Sobic009G069200 Sobic009G069200 Sobic003G415100--Sobic009G069200 Sobic002G390400 Sobic002G390400 Sobic003G415100--Sobic002G390400 Sobic009G257500 Sobic009G257500 Sobic003G415100--Sobic009G257500 Sobic001G090300 Sobic001G090300 Sobic003G415100--Sobic001G090300 Sobic001G123201 Sobic001G123201 Sobic003G415100--Sobic001G123201 Sobic006G126600 Sobic006G126600 Sobic003G415100--Sobic006G126600 Sobic006G091850 Sobic006G091850 Sobic003G415100--Sobic006G091850 Sobic003G253400 Sobic003G253400 Sobic003G415100--Sobic003G253400 Sobic002G400400 Sobic002G400400 Sobic002G103700--Sobic002G400400 Sobic002G103700--Sobic005G180800 Sobic003G022200 Sobic003G022200 Sobic002G103700--Sobic003G022200 Sobic002G103700--Sobic005G032400 Sobic002G103700--Sobic003G415100 Sobic002G103700--Sobic001G218200 Sobic007G078300 Sobic007G078300 Sobic002G103700--Sobic007G078300 Sobic001G129500 Sobic001G129500 Sobic002G103700--Sobic001G129500 Sobic007G155900 Sobic007G155900 Sobic002G103700--Sobic007G155900 Sobic001G116100 Sobic001G116100 Sobic001G218200--Sobic001G116100 Sobic001G218200--Sobic006G261100 Sobic001G218200--Sobic005G180800 Sobic002G362300 Sobic002G362300 Sobic001G218200--Sobic002G362300 Sobic001G218200--Sobic002G103700 Sobic004G256200 Sobic004G256200 Sobic001G218200--Sobic004G256200 Sobic005G030300 Sobic005G030300 Sobic001G218200--Sobic005G030300 Sobic002G347700 Sobic002G347700 Sobic001G218200--Sobic002G347700 Sobic001G218200--Sobic007G155900 Sobic001G038100 Sobic001G038100 Sobic006G261100--Sobic001G038100 Sobic010G095700 Sobic010G095700 Sobic006G261100--Sobic010G095700 Sobic002G276900 Sobic002G276900 Sobic006G261100--Sobic002G276900 Sobic007G117100 Sobic007G117100 Sobic006G261100--Sobic007G117100 Sobic009G022100 Sobic009G022100 Sobic006G261100--Sobic009G022100 Sobic006G120800 Sobic006G120800 Sobic006G261100--Sobic006G120800 Sobic001G390500 Sobic001G390500 Sobic006G261100--Sobic001G390500 Sobic009G216000 Sobic009G216000 Sobic006G261100--Sobic009G216000 Sobic003G354100 Sobic003G354100 Sobic006G261100--Sobic003G354100 Sobic006G110300 Sobic006G110300 Sobic009G166200--Sobic006G110300 Sobic002G148300 Sobic002G148300 Sobic009G166200--Sobic002G148300 Sobic008G111700 Sobic008G111700 Sobic009G166200--Sobic008G111700 Sobic001G448200 Sobic001G448200 Sobic009G166200--Sobic001G448200 Sobic009G166200--Sobic005G180800 Sobic009G166200--Sobic006G261100 Sobic003G031200 Sobic003G031200 Sobic009G166200--Sobic003G031200 Sobic009G036200 Sobic009G036200 Sobic009G166200--Sobic009G036200 Sobic002G272600 Sobic002G272600 Sobic009G166200--Sobic002G272600 Sobic006G144000 Sobic006G144000 Sobic004G313300--Sobic006G144000 Sobic010G063300 Sobic010G063300 Sobic004G313300--Sobic010G063300 Sobic006G224300 Sobic006G224300 Sobic004G313300--Sobic006G224300 Sobic003G070700 Sobic003G070700 Sobic004G313300--Sobic003G070700 Sobic004G353400 Sobic004G353400 Sobic004G313300--Sobic004G353400 Sobic009G125000 Sobic009G125000 Sobic004G313300--Sobic009G125000 Sobic005G040900 Sobic005G040900 Sobic004G313300--Sobic005G040900 Sobic005G198200 Sobic005G198200 Sobic004G313300--Sobic005G198200 Sobic004G152000 Sobic004G152000 Sobic004G313300--Sobic004G152000 Sobic005G177900 Sobic005G177900 Sobic001G384600--Sobic005G177900 Sobic006G022500 Sobic006G022500 Sobic001G384600--Sobic006G022500 Sobic004G148600 Sobic004G148600 Sobic001G384600--Sobic004G148600 Sobic001G228400 Sobic001G228400 Sobic001G384600--Sobic001G228400 Sobic009G194700 Sobic009G194700 Sobic001G384600--Sobic009G194700 Sobic003G244700 Sobic003G244700 Sobic001G384600--Sobic003G244700 Sobic001G384600--Sobic006G126600 Sobic006G022400 Sobic006G022400 Sobic001G384600--Sobic006G022400 Sobic004G052800 Sobic004G052800 Sobic001G384600--Sobic004G052800 Sobic003G004500 Sobic003G004500 Sobic005G032400--Sobic003G004500 Sobic010G262900 Sobic010G262900 Sobic005G032400--Sobic010G262900 Sobic005G032400--Sobic003G415100 Sobic001G053700 Sobic001G053700 Sobic005G032400--Sobic001G053700 Sobic002G403200 Sobic002G403200 Sobic005G032400--Sobic002G403200 Sobic005G050600 Sobic005G050600 Sobic005G032400--Sobic005G050600 Sobic009G156200 Sobic009G156200 Sobic005G032400--Sobic009G156200 Sobic010G180200 Sobic010G180200 Sobic005G032400--Sobic010G180200 Sobic008G045800 Sobic008G045800 Sobic005G032400--Sobic008G045800 Sobic003G051100 Sobic003G051100 Sobic002G247200--Sobic003G051100 Sobic001G429200 Sobic001G429200 Sobic002G247200--Sobic001G429200 Sobic002G247200--Sobic001G346700 Sobic008G169800 Sobic008G169800 Sobic002G247200--Sobic008G169800 Sobic002G247200--Sobic003G415100 Sobic002G247200--Sobic001G116100 Sobic002G247200--Sobic005G180800 Sobic006G203200 Sobic006G203200 Sobic002G247200--Sobic006G203200 Sobic002G247200--Sobic001G218200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.