Gene annotation
Transcriptome id Sobic.002G247200.2,Sobic.002G247200.1
Synonym Sb02g028370
Functional annotation jmjC domain-containing protein 5, putative, expressed
UniProt A0A1B6QDB2 , A0A1W0W5N7
Pfam PF13621 PF08007
Panther DB PTHR12461 PTHR12461:SF38
NCBI CDD KOG2132; Uncharacterized conserved protein, contains JmjC domain
KEGG Orthology K10277; KDM8, lysine-specific demethylase 8
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G20810 : 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
RAP-DB (Rice) LOC_Os09g31380.1 : jmjC domain-containing protein 5, putative, expressed
MaizeGDB (Corn) Zm00025a014207 , Zm00025a033802
Brachypodium PNT68387 , PNT68386 , PNT64835 , PNT64834 , KQJ98917 , KQJ90751
Barley HORVU5Hr1G073330.3 , HORVU5Hr1G073330.1 , HORVU5Hr1G073330.7 , HORVU5Hr1G073330.6 , HORVU5Hr1G073330.5 , HORVU5Hr1G073330.4 , HORVU5Hr1G073330.9 , HORVU5Hr1G073330.8 , HORVU5Hr1G073330.2 , HORVU5Hr1G073330.12 , HORVU5Hr1G073330.11 , HORVU5Hr1G073330.10
Wheat TraesCS7A02G246000 , TraesCS5A02G265500 , TraesCS5A02G265500 , TraesCS5A02G265500 , TraesCS7D02G244500 , TraesCS5D02G273400 , TraesCS5B02G265200 , TraesCS5B02G265200 , TraesCS5B02G265200 , TraesCS7B02G145500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G051100 BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed -
2 Sobic.001G429200 AT hook motif family protein, expressed -
3 Sobic.001G346700 Ser/Thr protein phosphatase family protein, putative, expressed -
4 Sobic.008G169800 galactosyltransferase family protein, putative, expressed -
5 Sobic.003G415100 BTBM1 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed -
6 Sobic.001G116100 threonine dehydratase biosynthetic, chloroplast precursor, putative, expressed K01754: E4.3.1.19, ilvA, threonine dehydratase
7 Sobic.005G180800 thioredoxin domain-containing protein 9, putative, expressed -
8 Sobic.006G203200 Disease resistance/zinc finger/chromosome condensation-like region protein, putative, expressed -
9 Sobic.001G218200 expressed protein -
10 Sobic.002G390400 expressed protein -
11 Sobic.003G244700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase
12 Sobic.008G156200 zinc finger family protein, putative, expressed K16277: E3 ubiquitin-protein ligase DRIP
13 Sobic.001G372900 expressed protein K08819: cyclin-dependent kinase 12/13
14 Sobic.001G384600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@endoglucanase, putative, expressed -
15 Sobic.006G104900 aldose 1-epimerase, putative, expressed K01785: galM, aldose 1-epimerase
16 Sobic.010G110000 asparagine synthetase, putative, expressed K01953: asnB, asparagine synthase (glutamine-hydrolysing)
17 Sobic.005G120600 Highest expression level in embryo(PubMedID : 27501690)@OsSPL19 - SBP-box gene family member, expressed -
18 Sobic.006G261100 UBX domain-containing protein, putative, expressed -
19 Sobic.004G116500 expressed protein -
20 Sobic.004G250600 NHL repeat-containing protein, putative, expressed -


Gene co-expression network
sample Sobic002G247200 Sobic002G247200 Sobic003G051100 Sobic003G051100 Sobic002G247200--Sobic003G051100 Sobic001G429200 Sobic001G429200 Sobic002G247200--Sobic001G429200 Sobic001G346700 Sobic001G346700 Sobic002G247200--Sobic001G346700 Sobic008G169800 Sobic008G169800 Sobic002G247200--Sobic008G169800 Sobic003G415100 Sobic003G415100 Sobic002G247200--Sobic003G415100 Sobic001G116100 Sobic001G116100 Sobic002G247200--Sobic001G116100 Sobic005G180800 Sobic005G180800 Sobic002G247200--Sobic005G180800 Sobic006G203200 Sobic006G203200 Sobic002G247200--Sobic006G203200 Sobic001G218200 Sobic001G218200 Sobic002G247200--Sobic001G218200 Sobic004G242000 Sobic004G242000 Sobic003G051100--Sobic004G242000 Sobic001G005800 Sobic001G005800 Sobic003G051100--Sobic001G005800 Sobic009G212100 Sobic009G212100 Sobic003G051100--Sobic009G212100 Sobic009G254000 Sobic009G254000 Sobic003G051100--Sobic009G254000 Sobic009G167100 Sobic009G167100 Sobic003G051100--Sobic009G167100 Sobic007G084200 Sobic007G084200 Sobic003G051100--Sobic007G084200 Sobic006G218900 Sobic006G218900 Sobic003G051100--Sobic006G218900 Sobic004G315700 Sobic004G315700 Sobic003G051100--Sobic004G315700 Sobic003G051100--Sobic003G415100 Sobic002G390400 Sobic002G390400 Sobic001G429200--Sobic002G390400 Sobic003G180100 Sobic003G180100 Sobic001G429200--Sobic003G180100 Sobic001G429200--Sobic001G346700 Sobic004G050300 Sobic004G050300 Sobic001G429200--Sobic004G050300 Sobic010G052400 Sobic010G052400 Sobic001G429200--Sobic010G052400 Sobic009G069200 Sobic009G069200 Sobic001G429200--Sobic009G069200 Sobic001G115500 Sobic001G115500 Sobic001G429200--Sobic001G115500 Sobic001G507200 Sobic001G507200 Sobic001G429200--Sobic001G507200 Sobic001G429200--Sobic003G415100 Sobic009G129600 Sobic009G129600 Sobic001G346700--Sobic009G129600 Sobic004G347100 Sobic004G347100 Sobic001G346700--Sobic004G347100 Sobic001G346700--Sobic003G415100 Sobic003G354100 Sobic003G354100 Sobic001G346700--Sobic003G354100 Sobic007G188900 Sobic007G188900 Sobic001G346700--Sobic007G188900 Sobic002G148400 Sobic002G148400 Sobic001G346700--Sobic002G148400 Sobic007G139400 Sobic007G139400 Sobic001G346700--Sobic007G139400 Sobic002G268900 Sobic002G268900 Sobic001G346700--Sobic002G268900 Sobic002G334600 Sobic002G334600 Sobic001G346700--Sobic002G334600 Sobic008G169800--Sobic003G415100 Sobic001G123201 Sobic001G123201 Sobic008G169800--Sobic001G123201 Sobic010G207400 Sobic010G207400 Sobic008G169800--Sobic010G207400 Sobic005G003750 Sobic005G003750 Sobic008G169800--Sobic005G003750 Sobic006G261100 Sobic006G261100 Sobic008G169800--Sobic006G261100 Sobic004G133700 Sobic004G133700 Sobic008G169800--Sobic004G133700 Sobic007G209000 Sobic007G209000 Sobic008G169800--Sobic007G209000 Sobic002G403200 Sobic002G403200 Sobic008G169800--Sobic002G403200 Sobic004G345100 Sobic004G345100 Sobic008G169800--Sobic004G345100 Sobic003G415100--Sobic001G346700 Sobic003G415100--Sobic009G069200 Sobic003G415100--Sobic002G390400 Sobic009G257500 Sobic009G257500 Sobic003G415100--Sobic009G257500 Sobic001G090300 Sobic001G090300 Sobic003G415100--Sobic001G090300 Sobic003G415100--Sobic001G123201 Sobic006G126600 Sobic006G126600 Sobic003G415100--Sobic006G126600 Sobic006G091850 Sobic006G091850 Sobic003G415100--Sobic006G091850 Sobic003G253400 Sobic003G253400 Sobic003G415100--Sobic003G253400 Sobic001G116100--Sobic001G218200 Sobic002G095700 Sobic002G095700 Sobic001G116100--Sobic002G095700 Sobic001G116100--Sobic003G354100 Sobic001G116100--Sobic007G188900 Sobic002G177400 Sobic002G177400 Sobic001G116100--Sobic002G177400 Sobic002G362300 Sobic002G362300 Sobic001G116100--Sobic002G362300 Sobic001G116100--Sobic001G346700 Sobic008G073000 Sobic008G073000 Sobic001G116100--Sobic008G073000 Sobic001G116100--Sobic004G347100 Sobic005G180800--Sobic003G415100 Sobic002G103700 Sobic002G103700 Sobic005G180800--Sobic002G103700 Sobic005G180800--Sobic001G218200 Sobic005G180800--Sobic006G261100 Sobic009G166200 Sobic009G166200 Sobic005G180800--Sobic009G166200 Sobic004G313300 Sobic004G313300 Sobic005G180800--Sobic004G313300 Sobic001G384600 Sobic001G384600 Sobic005G180800--Sobic001G384600 Sobic005G032400 Sobic005G032400 Sobic005G180800--Sobic005G032400 Sobic005G180800--Sobic002G247200 Sobic002G016900 Sobic002G016900 Sobic006G203200--Sobic002G016900 Sobic003G244700 Sobic003G244700 Sobic006G203200--Sobic003G244700 Sobic002G253600 Sobic002G253600 Sobic006G203200--Sobic002G253600 Sobic006G120400 Sobic006G120400 Sobic006G203200--Sobic006G120400 Sobic002G341100 Sobic002G341100 Sobic006G203200--Sobic002G341100 Sobic001G130700 Sobic001G130700 Sobic006G203200--Sobic001G130700 Sobic008G156200 Sobic008G156200 Sobic006G203200--Sobic008G156200 Sobic009G242800 Sobic009G242800 Sobic006G203200--Sobic009G242800 Sobic002G002500 Sobic002G002500 Sobic006G203200--Sobic002G002500 Sobic001G218200--Sobic001G116100 Sobic001G218200--Sobic006G261100 Sobic001G218200--Sobic005G180800 Sobic001G218200--Sobic002G362300 Sobic001G218200--Sobic002G103700 Sobic004G256200 Sobic004G256200 Sobic001G218200--Sobic004G256200 Sobic005G030300 Sobic005G030300 Sobic001G218200--Sobic005G030300 Sobic002G347700 Sobic002G347700 Sobic001G218200--Sobic002G347700 Sobic007G155900 Sobic007G155900 Sobic001G218200--Sobic007G155900
Octagon: transcription factors


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