Gene annotation
Transcriptome id Sobic.006G005200.3,Sobic.006G005200.4,Sobic.006G005200.2
Synonym Sb06g000640
Functional annotation erythronate-4-phosphate dehydrogenase domain containing protein, expressed
UniProt C5YBL2
Pfam PF00389 PF02826
Panther DB PTHR10996 PTHR10996:SF141
NCBI CDD KOG0069; Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily)
KEGG Orthology K15919; glyoxylate/hydroxypyruvate reductase
Gene Ontology GO:0016616; oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor GO:0008152metabolic process


Orthologs (automatic annotation)
TAIR AT2G45630 : D-isomer specific 2-hydroxyacid dehydrogenase family protein
RAP-DB (Rice) LOC_Os04g01650.1 : erythronate-4-phosphate dehydrogenase domain containing protein, expressed
MaizeGDB (Corn) Zm00025a035865
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G060000 CDP-alcohol phosphatidyltransferase, putative, expressed K00999: CDP-diacylglycerol--inositol 3-phosphatidyltransferase
2 Sobic.009G156100 - -
3 Sobic.003G377500 OsFBX10 - F-box domain containing protein, expressed -
4 Sobic.001G114200 transmembrane anterior posterior transformation 1, putative, expressed -
5 Sobic.008G055500 Protein-tyrosine phosphatase domain containing protein, expressed -
6 Sobic.002G200000 zinc finger, C3HC4 type, putative, expressed -
7 Sobic.009G046900 N-acetylglucosaminyltransferase, putative, expressed -
8 Sobic.003G117800 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
9 Sobic.004G263500 DnaK family protein, putative, expressed K09486: hypoxia up-regulated 1
10 Sobic.002G395500 ATP12 ATPase, putative, expressed K07556: ATPeAF2, ATPAF2, ATP synthase mitochondrial F1 complex assembly factor 2
11 Sobic.003G242700 - -
12 Sobic.003G402800 DUF647 domain containing protein, putative, expressed -
13 Sobic.008G116700 expressed protein -
14 Sobic.008G069300 - -
15 Sobic.005G185500 - -
16 Sobic.001G057400 expressed protein -
17 Sobic.002G074800 - -
18 Sobic.006G162400 expressed protein -
19 Sobic.003G405600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@exostosin family domain containing protein, expressed -
20 Sobic.007G022600 adenylate kinase, putative, expressed K00939: adk, adenylate kinase


Gene co-expression network
sample Sobic006G005200 Sobic006G005200 Sobic006G060000 Sobic006G060000 Sobic006G005200--Sobic006G060000 Sobic009G156100 Sobic009G156100 Sobic006G005200--Sobic009G156100 Sobic003G377500 Sobic003G377500 Sobic006G005200--Sobic003G377500 Sobic001G114200 Sobic001G114200 Sobic006G005200--Sobic001G114200 Sobic008G055500 Sobic008G055500 Sobic006G005200--Sobic008G055500 Sobic002G200000 Sobic002G200000 Sobic006G005200--Sobic002G200000 Sobic009G046900 Sobic009G046900 Sobic006G005200--Sobic009G046900 Sobic003G117800 Sobic003G117800 Sobic006G005200--Sobic003G117800 Sobic004G263500 Sobic004G263500 Sobic006G005200--Sobic004G263500 Sobic006G060000--Sobic008G055500 Sobic004G350700 Sobic004G350700 Sobic006G060000--Sobic004G350700 Sobic007G172700 Sobic007G172700 Sobic006G060000--Sobic007G172700 Sobic006G060000--Sobic001G114200 Sobic003G394500 Sobic003G394500 Sobic006G060000--Sobic003G394500 Sobic001G389200 Sobic001G389200 Sobic006G060000--Sobic001G389200 Sobic006G060000--Sobic004G263500 Sobic006G060000--Sobic003G117800 Sobic001G490900 Sobic001G490900 Sobic006G060000--Sobic001G490900 Sobic009G156100--Sobic003G377500 Sobic004G068100 Sobic004G068100 Sobic009G156100--Sobic004G068100 Sobic009G156100--Sobic001G114200 Sobic008G116700 Sobic008G116700 Sobic009G156100--Sobic008G116700 Sobic009G156100--Sobic006G060000 Sobic007G076400 Sobic007G076400 Sobic009G156100--Sobic007G076400 Sobic003G181700 Sobic003G181700 Sobic009G156100--Sobic003G181700 Sobic009G156100--Sobic006G005200 Sobic009G156100--Sobic002G200000 Sobic003G377500--Sobic009G156100 Sobic003G377500--Sobic001G114200 Sobic003G377500--Sobic006G005200 Sobic003G377500--Sobic008G116700 Sobic003G405600 Sobic003G405600 Sobic003G377500--Sobic003G405600 Sobic003G377500--Sobic002G200000 Sobic003G402800 Sobic003G402800 Sobic003G377500--Sobic003G402800 Sobic005G090200 Sobic005G090200 Sobic003G377500--Sobic005G090200 Sobic003G377500--Sobic008G055500 Sobic001G114200--Sobic004G350700 Sobic001G114200--Sobic006G060000 Sobic010G160300 Sobic010G160300 Sobic001G114200--Sobic010G160300 Sobic001G114200--Sobic003G117800 Sobic001G114200--Sobic003G394500 Sobic006G210700 Sobic006G210700 Sobic001G114200--Sobic006G210700 Sobic001G114200--Sobic001G490900 Sobic007G030100 Sobic007G030100 Sobic001G114200--Sobic007G030100 Sobic007G218600 Sobic007G218600 Sobic001G114200--Sobic007G218600 Sobic008G055500--Sobic003G402800 Sobic008G055500--Sobic006G060000 Sobic008G055500--Sobic004G350700 Sobic003G385300 Sobic003G385300 Sobic008G055500--Sobic003G385300 Sobic008G055500--Sobic003G117800 Sobic001G257800 Sobic001G257800 Sobic008G055500--Sobic001G257800 Sobic008G152700 Sobic008G152700 Sobic008G055500--Sobic008G152700 Sobic004G176200 Sobic004G176200 Sobic008G055500--Sobic004G176200 Sobic001G501900 Sobic001G501900 Sobic008G055500--Sobic001G501900 Sobic002G200000--Sobic006G060000 Sobic002G200000--Sobic007G076400 Sobic002G200000--Sobic008G116700 Sobic001G141400 Sobic001G141400 Sobic002G200000--Sobic001G141400 Sobic006G115100 Sobic006G115100 Sobic002G200000--Sobic006G115100 Sobic002G200000--Sobic008G055500 Sobic002G200000--Sobic007G172700 Sobic007G087000 Sobic007G087000 Sobic002G200000--Sobic007G087000 Sobic002G355800 Sobic002G355800 Sobic002G200000--Sobic002G355800 Sobic001G149000 Sobic001G149000 Sobic009G046900--Sobic001G149000 Sobic009G178400 Sobic009G178400 Sobic009G046900--Sobic009G178400 Sobic002G233600 Sobic002G233600 Sobic009G046900--Sobic002G233600 Sobic006G134500 Sobic006G134500 Sobic009G046900--Sobic006G134500 Sobic002G074800 Sobic002G074800 Sobic009G046900--Sobic002G074800 Sobic009G046900--Sobic003G385300 Sobic001G384200 Sobic001G384200 Sobic009G046900--Sobic001G384200 Sobic006G193400 Sobic006G193400 Sobic009G046900--Sobic006G193400 Sobic003G358600 Sobic003G358600 Sobic009G046900--Sobic003G358600 Sobic001G424800 Sobic001G424800 Sobic003G117800--Sobic001G424800 Sobic003G117800--Sobic003G385300 Sobic003G117800--Sobic003G394500 Sobic001G057400 Sobic001G057400 Sobic003G117800--Sobic001G057400 Sobic003G117800--Sobic008G152700 Sobic003G117800--Sobic001G149000 Sobic001G356200 Sobic001G356200 Sobic003G117800--Sobic001G356200 Sobic001G385000 Sobic001G385000 Sobic003G117800--Sobic001G385000 Sobic003G117800--Sobic009G046900 Sobic001G356100 Sobic001G356100 Sobic004G263500--Sobic001G356100 Sobic004G263500--Sobic006G060000 Sobic004G263500--Sobic003G394500 Sobic004G263500--Sobic008G055500 Sobic001G378800 Sobic001G378800 Sobic004G263500--Sobic001G378800 Sobic010G133400 Sobic010G133400 Sobic004G263500--Sobic010G133400 Sobic004G263500--Sobic004G350700 Sobic007G118500 Sobic007G118500 Sobic004G263500--Sobic007G118500 Sobic004G263500--Sobic001G389200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.