Gene annotation
Transcriptome id Sobic.006G017500.1
Synonym Sb06g001650
Functional annotation Leucine Rich Repeat family protein, expressed
UniProt C5YC85
Pfam -
Panther DB PTHR23155 PTHR23155:SF498
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G63350 : Disease resistance protein (CC-NBS-LRR class) family
RAP-DB (Rice) LOC_Os04g08390.1 : Leucine Rich Repeat family protein, expressed
MaizeGDB (Corn) -
Brachypodium PNT75354 , PNT75352 , PNT75353 , PNT75350 , PNT75351 , KQJ81681 , PNT62394 , PNT62392 , PNT62393
Barley HORVU7Hr1G002900.2 , HORVU7Hr1G002900.3 , HORVU7Hr1G002900.1 , HORVU7Hr1G002900.6 , HORVU7Hr1G002900.7 , HORVU7Hr1G002900.4 , HORVU7Hr1G002900.5
Wheat TraesCS2A02G044200 , TraesCS2D02G043000 , TraesCS2D02G043100 , TraesCS2D02G042900 , TraesCS2A02G001500 , TraesCS2A02G044100 , TraesCS7A02G027000 , TraesCS2D02G001200 , TraesCS7B02G440800 , TraesCS7B02G440800
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G125300 Leucine Rich Repeat family protein, expressed -
2 Sobic.006G017400 Leucine Rich Repeat family protein, expressed -
3 Sobic.006G016000 - -
4 Sobic.006G017332 - -
5 Sobic.001G282600 transporter family protein, putative, expressed -
6 Sobic.004G225200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Protein nitrilase 4 NIT4 (Os)(PubMedID : 27208977)@nitrilase, putative, expressed K13035: beta-cyano-L-alanine hydratase/nitrilase
7 Sobic.001G150650 - -
8 Sobic.004G329300 leucine aminopeptidase, chloroplast precursor, putative, expressed K01255: CARP, leucyl aminopeptidase
9 Sobic.003G265100 lipid phosphatase protein, putative, expressed -
10 Sobic.006G104600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
11 Sobic.001G517800 NIN, putative, expressed -
12 Sobic.005G089400 - -
13 Sobic.006G006300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MBTB51 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
14 Sobic.002G128200 Regulator of chromosome condensation (RCC1) family protein(PubMedID : 26465154)@Regulator of chromosome condensation domain containing protein, expressed -
15 Sobic.010G272800 OsFtsH1 FtsH protease, homologue of AtFtsH1/5, expressed K03798: ftsH, cell division protease FtsH
16 Sobic.003G322700 expressed protein -
17 Sobic.010G169000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Multi-drugresistance-associated protein 6(PubMedID : 26320239)@ABC transporter, ATP-binding protein, putative, expressed -
18 Sobic.006G039000 - -
19 Sobic.006G199000 pathogenesis-related Bet v I family protein, putative, expressed -
20 Sobic.001G496100 - -


Gene co-expression network
sample Sobic006G017500 Sobic006G017500 Sobic010G125300 Sobic010G125300 Sobic006G017500--Sobic010G125300 Sobic006G017400 Sobic006G017400 Sobic006G017500--Sobic006G017400 Sobic006G016000 Sobic006G016000 Sobic006G017500--Sobic006G016000 Sobic006G017332 Sobic006G017332 Sobic006G017500--Sobic006G017332 Sobic001G282600 Sobic001G282600 Sobic006G017500--Sobic001G282600 Sobic004G225200 Sobic004G225200 Sobic006G017500--Sobic004G225200 Sobic001G150650 Sobic001G150650 Sobic006G017500--Sobic001G150650 Sobic004G329300 Sobic004G329300 Sobic006G017500--Sobic004G329300 Sobic003G265100 Sobic003G265100 Sobic006G017500--Sobic003G265100 Sobic010G125300--Sobic006G017500 Sobic010G125300--Sobic006G017400 Sobic010G125300--Sobic001G282600 Sobic010G125300--Sobic001G150650 Sobic003G322700 Sobic003G322700 Sobic010G125300--Sobic003G322700 Sobic010G125300--Sobic006G016000 Sobic010G169000 Sobic010G169000 Sobic010G125300--Sobic010G169000 Sobic003G010600 Sobic003G010600 Sobic010G125300--Sobic003G010600 Sobic010G125300--Sobic004G225200 Sobic006G017400--Sobic006G017500 Sobic006G017400--Sobic010G125300 Sobic006G017400--Sobic006G016000 Sobic010G024200 Sobic010G024200 Sobic006G017400--Sobic010G024200 Sobic001G419600 Sobic001G419600 Sobic006G017400--Sobic001G419600 Sobic010G145500 Sobic010G145500 Sobic006G017400--Sobic010G145500 Sobic005G089400 Sobic005G089400 Sobic006G017400--Sobic005G089400 Sobic010G272800 Sobic010G272800 Sobic006G017400--Sobic010G272800 Sobic008G060500 Sobic008G060500 Sobic006G017400--Sobic008G060500 Sobic006G016000--Sobic006G017500 Sobic006G016000--Sobic005G089400 Sobic008G166550 Sobic008G166550 Sobic006G016000--Sobic008G166550 Sobic006G016000--Sobic010G145500 Sobic004G239700 Sobic004G239700 Sobic006G016000--Sobic004G239700 Sobic001G223550 Sobic001G223550 Sobic006G016000--Sobic001G223550 Sobic001G517800 Sobic001G517800 Sobic006G016000--Sobic001G517800 Sobic003G416000 Sobic003G416000 Sobic006G016000--Sobic003G416000 Sobic004G143475 Sobic004G143475 Sobic006G016000--Sobic004G143475 Sobic009G011600 Sobic009G011600 Sobic006G017332--Sobic009G011600 Sobic007G123500 Sobic007G123500 Sobic006G017332--Sobic007G123500 Sobic002G390500 Sobic002G390500 Sobic006G017332--Sobic002G390500 Sobic006G017332--Sobic001G517800 Sobic006G017332--Sobic003G416000 Sobic002G128200 Sobic002G128200 Sobic006G017332--Sobic002G128200 Sobic006G017332--Sobic006G017500 Sobic010G150800 Sobic010G150800 Sobic006G017332--Sobic010G150800 Sobic007G169300 Sobic007G169300 Sobic006G017332--Sobic007G169300 Sobic002G266000 Sobic002G266000 Sobic001G282600--Sobic002G266000 Sobic006G104600 Sobic006G104600 Sobic001G282600--Sobic006G104600 Sobic006G199000 Sobic006G199000 Sobic001G282600--Sobic006G199000 Sobic001G282600--Sobic004G225200 Sobic007G210500 Sobic007G210500 Sobic001G282600--Sobic007G210500 Sobic001G282600--Sobic004G329300 Sobic008G153400 Sobic008G153400 Sobic001G282600--Sobic008G153400 Sobic003G355600 Sobic003G355600 Sobic001G282600--Sobic003G355600 Sobic001G282600--Sobic003G322700 Sobic004G225100 Sobic004G225100 Sobic004G225200--Sobic004G225100 Sobic004G225200--Sobic001G282600 Sobic004G225200--Sobic002G266000 Sobic004G225200--Sobic006G199000 Sobic003G398100 Sobic003G398100 Sobic004G225200--Sobic003G398100 Sobic004G225200--Sobic006G104600 Sobic004G071200 Sobic004G071200 Sobic004G225200--Sobic004G071200 Sobic004G225200--Sobic003G322700 Sobic005G178100 Sobic005G178100 Sobic004G225200--Sobic005G178100 Sobic001G150600 Sobic001G150600 Sobic001G150650--Sobic001G150600 Sobic004G255000 Sobic004G255000 Sobic001G150650--Sobic004G255000 Sobic003G087200 Sobic003G087200 Sobic001G150650--Sobic003G087200 Sobic006G100332 Sobic006G100332 Sobic001G150650--Sobic006G100332 Sobic009G029600 Sobic009G029600 Sobic001G150650--Sobic009G029600 Sobic001G150650--Sobic008G153400 Sobic002G085300 Sobic002G085300 Sobic001G150650--Sobic002G085300 Sobic001G162700 Sobic001G162700 Sobic001G150650--Sobic001G162700 Sobic003G259200 Sobic003G259200 Sobic001G150650--Sobic003G259200 Sobic004G329300--Sobic001G282600 Sobic004G329300--Sobic010G169000 Sobic004G329300--Sobic002G266000 Sobic004G329300--Sobic006G104600 Sobic004G329300--Sobic004G225200 Sobic009G193700 Sobic009G193700 Sobic004G329300--Sobic009G193700 Sobic003G257100 Sobic003G257100 Sobic004G329300--Sobic003G257100 Sobic004G329300--Sobic003G322700 Sobic007G004500 Sobic007G004500 Sobic004G329300--Sobic007G004500 Sobic003G265100--Sobic004G225200 Sobic001G305800 Sobic001G305800 Sobic003G265100--Sobic001G305800 Sobic003G265100--Sobic004G225100 Sobic005G215900 Sobic005G215900 Sobic003G265100--Sobic005G215900 Sobic006G091700 Sobic006G091700 Sobic003G265100--Sobic006G091700 Sobic001G089800 Sobic001G089800 Sobic003G265100--Sobic001G089800 Sobic003G265100--Sobic005G178100 Sobic001G015500 Sobic001G015500 Sobic003G265100--Sobic001G015500 Sobic004G162400 Sobic004G162400 Sobic003G265100--Sobic004G162400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.