Gene annotation
| Transcriptome id | Sobic.006G006300.1 |
|---|---|
| Synonym | BPM1, ATBPM1, Sb06g000720 |
| Functional annotation | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543) MBTB51 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed |
| UniProt | C5YBM4 |
| Pfam | PF00917 PF00651 |
| Panther DB | PTHR26379 PTHR26379:SF144 |
| NCBI CDD | KOG1987; Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains |
| KEGG Orthology | K10523; speckle-type POZ protein |
| Gene Ontology | GO:0005515; protein binding |
Orthologs (automatic annotation)
| TAIR | AT5G19000 : BTB-POZ and MATH domain 1 |
|---|---|
| RAP-DB (Rice) | LOC_Os10g29310.1 : MBTB51 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed |
| MaizeGDB (Corn) | - |
| Brachypodium | - |
| Barley | - |
| Wheat | - |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.010G145500 | expressed protein | - |
| 2 | Sobic.004G261900 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@diacylglycerol O-acyltransferase, putative, expressed | K14457: MOGAT2, 2-acylglycerol O-acyltransferase 2 |
| 3 | Sobic.001G504900 | pheophorbide a oxygenase, chloroplast precursor, putative, expressed | K13071: PAO, pheophorbide a oxygenase |
| 4 | Sobic.006G064600 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@AMP-binding enzyme, putative, expressed | K01895: ACSS1_2, acetyl-CoA synthetase |
| 5 | Sobic.001G488700 | sucrose transporter 2(PubMedID : 26465154)@sucrose transporter 2(PubMedID : 26465154)@sucrose transporters("PubMedID : 27986867,PubMedID : 23805151")@Sucrose transporter genes(PubMedID : 24456189)@Sugar transporter(PubMedID : 27330561)@sucrose transporter, putativ, expressed | K15378: solute carrier family 45, member 1/2/4 |
| 6 | Sobic.002G266000 | ankyrin repeat-containing protein, putative, expressed | - |
| 7 | Sobic.010G227100 | BTB/POZ domain containing protein, putative, expressed | - |
| 8 | Sobic.001G223550 | - | - |
| 9 | Sobic.009G011600 | expressed protein | - |
| 10 | Sobic.001G282600 | transporter family protein, putative, expressed | - |
| 11 | Sobic.001G517800 | NIN, putative, expressed | - |
| 12 | Sobic.002G249200 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@auxin efflux carrier component, putative, expressed | - |
| 13 | Sobic.001G462500 | natural resistance-associated macrophage protein, putative, expressed | K12347: SLC11A1, natural resistance-associated macrophage protein 1 |
| 14 | Sobic.001G233300 | - | - |
| 15 | Sobic.002G187700 | expressed protein | - |
| 16 | Sobic.002G243800 | BPI/LBP family protein At3g20270 precursor, putative, expressed | - |
| 17 | Sobic.001G016700 | ion channel DMI1-like, chloroplast precursor, putative, expressed | - |
| 18 | Sobic.010G277900 | ROOT HAIRLESS 1, putative, expressed | - |
| 19 | Sobic.001G500800 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@4-coumarate--CoA ligase-like 7, putative, expressed | K01904: 4-coumarate--CoA ligase |
| 20 | Sobic.001G050200 | expressed protein | - |
Gene co-expression network
Octagon: transcription factors
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