Gene annotation
Transcriptome id Sobic.010G125300.1
Synonym
Functional annotation Leucine Rich Repeat family protein, expressed
UniProt A0A1W0VSP2
Pfam -
Panther DB PTHR23155 PTHR23155:SF498
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G63350 : Disease resistance protein (CC-NBS-LRR class) family
RAP-DB (Rice) LOC_Os04g08390.1 : Leucine Rich Repeat family protein, expressed
MaizeGDB (Corn) -
Brachypodium PNT75354 , PNT75352 , PNT75353 , PNT75350 , PNT75351 , KQJ81681 , PNT62394 , PNT62392 , PNT62393
Barley HORVU7Hr1G002900.2 , HORVU7Hr1G002900.3 , HORVU7Hr1G002900.1 , HORVU7Hr1G002900.6 , HORVU7Hr1G002900.7 , HORVU7Hr1G002900.4 , HORVU7Hr1G002900.5
Wheat TraesCS2A02G044200 , TraesCS2D02G043000 , TraesCS2D02G043100 , TraesCS2D02G042900 , TraesCS2A02G001500 , TraesCS2A02G044100 , TraesCS7A02G027000 , TraesCS2D02G001200 , TraesCS7B02G440800 , TraesCS7B02G440800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G017500 Leucine Rich Repeat family protein, expressed -
2 Sobic.006G017400 Leucine Rich Repeat family protein, expressed -
3 Sobic.001G282600 transporter family protein, putative, expressed -
4 Sobic.001G150650 - -
5 Sobic.003G322700 expressed protein -
6 Sobic.006G016000 - -
7 Sobic.010G169000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Multi-drugresistance-associated protein 6(PubMedID : 26320239)@ABC transporter, ATP-binding protein, putative, expressed -
8 Sobic.003G010600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed K13606: NOL, chlorophyll(ide) b reductase
9 Sobic.004G225200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Protein nitrilase 4 NIT4 (Os)(PubMedID : 27208977)@nitrilase, putative, expressed K13035: beta-cyano-L-alanine hydratase/nitrilase
10 Sobic.005G171400 expressed protein -
11 Sobic.010G170550 - -
12 Sobic.001G351800 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@integral membrane protein, putative, expressed -
13 Sobic.004G329300 leucine aminopeptidase, chloroplast precursor, putative, expressed K01255: CARP, leucyl aminopeptidase
14 Sobic.006G017332 - -
15 Sobic.007G210500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ABC transporter, ATP-binding protein, putative, expressed -
16 Sobic.001G517800 NIN, putative, expressed -
17 Sobic.001G006600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@WRKY80, expressed -
18 Sobic.009G029600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glutamate--cysteine ligase, chloroplast precursor, putative, expressed K01919: glutamate--cysteine ligase
19 Sobic.010G272800 OsFtsH1 FtsH protease, homologue of AtFtsH1/5, expressed K03798: ftsH, cell division protease FtsH
20 Sobic.006G104600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -


Gene co-expression network
sample Sobic010G125300 Sobic010G125300 Sobic006G017500 Sobic006G017500 Sobic010G125300--Sobic006G017500 Sobic006G017400 Sobic006G017400 Sobic010G125300--Sobic006G017400 Sobic001G282600 Sobic001G282600 Sobic010G125300--Sobic001G282600 Sobic001G150650 Sobic001G150650 Sobic010G125300--Sobic001G150650 Sobic003G322700 Sobic003G322700 Sobic010G125300--Sobic003G322700 Sobic006G016000 Sobic006G016000 Sobic010G125300--Sobic006G016000 Sobic010G169000 Sobic010G169000 Sobic010G125300--Sobic010G169000 Sobic003G010600 Sobic003G010600 Sobic010G125300--Sobic003G010600 Sobic004G225200 Sobic004G225200 Sobic010G125300--Sobic004G225200 Sobic006G017500--Sobic010G125300 Sobic006G017500--Sobic006G017400 Sobic006G017500--Sobic006G016000 Sobic006G017332 Sobic006G017332 Sobic006G017500--Sobic006G017332 Sobic006G017500--Sobic001G282600 Sobic006G017500--Sobic004G225200 Sobic006G017500--Sobic001G150650 Sobic004G329300 Sobic004G329300 Sobic006G017500--Sobic004G329300 Sobic003G265100 Sobic003G265100 Sobic006G017500--Sobic003G265100 Sobic006G017400--Sobic006G017500 Sobic006G017400--Sobic010G125300 Sobic006G017400--Sobic006G016000 Sobic010G024200 Sobic010G024200 Sobic006G017400--Sobic010G024200 Sobic001G419600 Sobic001G419600 Sobic006G017400--Sobic001G419600 Sobic010G145500 Sobic010G145500 Sobic006G017400--Sobic010G145500 Sobic005G089400 Sobic005G089400 Sobic006G017400--Sobic005G089400 Sobic010G272800 Sobic010G272800 Sobic006G017400--Sobic010G272800 Sobic008G060500 Sobic008G060500 Sobic006G017400--Sobic008G060500 Sobic002G266000 Sobic002G266000 Sobic001G282600--Sobic002G266000 Sobic006G104600 Sobic006G104600 Sobic001G282600--Sobic006G104600 Sobic006G199000 Sobic006G199000 Sobic001G282600--Sobic006G199000 Sobic001G282600--Sobic004G225200 Sobic007G210500 Sobic007G210500 Sobic001G282600--Sobic007G210500 Sobic001G282600--Sobic004G329300 Sobic008G153400 Sobic008G153400 Sobic001G282600--Sobic008G153400 Sobic003G355600 Sobic003G355600 Sobic001G282600--Sobic003G355600 Sobic001G282600--Sobic003G322700 Sobic001G150600 Sobic001G150600 Sobic001G150650--Sobic001G150600 Sobic004G255000 Sobic004G255000 Sobic001G150650--Sobic004G255000 Sobic003G087200 Sobic003G087200 Sobic001G150650--Sobic003G087200 Sobic006G100332 Sobic006G100332 Sobic001G150650--Sobic006G100332 Sobic009G029600 Sobic009G029600 Sobic001G150650--Sobic009G029600 Sobic001G150650--Sobic008G153400 Sobic002G085300 Sobic002G085300 Sobic001G150650--Sobic002G085300 Sobic001G162700 Sobic001G162700 Sobic001G150650--Sobic001G162700 Sobic003G259200 Sobic003G259200 Sobic001G150650--Sobic003G259200 Sobic003G322700--Sobic002G266000 Sobic006G204900 Sobic006G204900 Sobic003G322700--Sobic006G204900 Sobic010G001500 Sobic010G001500 Sobic003G322700--Sobic010G001500 Sobic004G355000 Sobic004G355000 Sobic003G322700--Sobic004G355000 Sobic001G207400 Sobic001G207400 Sobic003G322700--Sobic001G207400 Sobic003G322700--Sobic003G355600 Sobic006G087700 Sobic006G087700 Sobic003G322700--Sobic006G087700 Sobic003G322700--Sobic006G199000 Sobic004G034600 Sobic004G034600 Sobic003G322700--Sobic004G034600 Sobic006G016000--Sobic006G017500 Sobic006G016000--Sobic005G089400 Sobic008G166550 Sobic008G166550 Sobic006G016000--Sobic008G166550 Sobic006G016000--Sobic010G145500 Sobic004G239700 Sobic004G239700 Sobic006G016000--Sobic004G239700 Sobic001G223550 Sobic001G223550 Sobic006G016000--Sobic001G223550 Sobic001G517800 Sobic001G517800 Sobic006G016000--Sobic001G517800 Sobic003G416000 Sobic003G416000 Sobic006G016000--Sobic003G416000 Sobic004G143475 Sobic004G143475 Sobic006G016000--Sobic004G143475 Sobic010G169000--Sobic004G329300 Sobic010G169000--Sobic007G210500 Sobic010G169000--Sobic001G282600 Sobic004G042300 Sobic004G042300 Sobic010G169000--Sobic004G042300 Sobic001G217400 Sobic001G217400 Sobic010G169000--Sobic001G217400 Sobic004G053700 Sobic004G053700 Sobic010G169000--Sobic004G053700 Sobic006G214200 Sobic006G214200 Sobic010G169000--Sobic006G214200 Sobic010G107000 Sobic010G107000 Sobic010G169000--Sobic010G107000 Sobic010G169000--Sobic003G355600 Sobic001G325200 Sobic001G325200 Sobic003G010600--Sobic001G325200 Sobic009G226300 Sobic009G226300 Sobic003G010600--Sobic009G226300 Sobic004G260000 Sobic004G260000 Sobic003G010600--Sobic004G260000 Sobic009G054500 Sobic009G054500 Sobic003G010600--Sobic009G054500 Sobic009G211400 Sobic009G211400 Sobic003G010600--Sobic009G211400 Sobic008G062200 Sobic008G062200 Sobic003G010600--Sobic008G062200 Sobic003G010600--Sobic006G100332 Sobic005G018500 Sobic005G018500 Sobic003G010600--Sobic005G018500 Sobic003G219600 Sobic003G219600 Sobic003G010600--Sobic003G219600 Sobic004G225100 Sobic004G225100 Sobic004G225200--Sobic004G225100 Sobic004G225200--Sobic001G282600 Sobic004G225200--Sobic002G266000 Sobic004G225200--Sobic006G199000 Sobic003G398100 Sobic003G398100 Sobic004G225200--Sobic003G398100 Sobic004G225200--Sobic006G104600 Sobic004G071200 Sobic004G071200 Sobic004G225200--Sobic004G071200 Sobic004G225200--Sobic003G322700 Sobic005G178100 Sobic005G178100 Sobic004G225200--Sobic005G178100
Octagon: transcription factors


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