Gene annotation
Transcriptome id Sobic.006G086900.1,Sobic.006G086900.2,Sobic.006G086900.3
Synonym Sb06g017280
Functional annotation pectinesterase, putative, expressed
UniProt C5Y8S2
Pfam PF01095
Panther DB PTHR31707 PTHR31707:SF28
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005618; cell wall


Orthologs (automatic annotation)
TAIR AT5G09760 : Plant invertase/pectin methylesterase inhibitor superfamily
RAP-DB (Rice) LOC_Os04g35770.1 : pectinesterase, putative, expressed
MaizeGDB (Corn) Zm00025a011304
Brachypodium KQJ82734
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.006G086900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G237650 - -
2 Sobic.002G297800 growth regulating factor protein, putative, expressed -
3 Sobic.005G128000 stripe rust resistance protein Yr10, putative, expressed -
4 Sobic.009G257300 ELF3 protein, putative, expressed K12125: protein EARLY FLOWERING 3
5 Sobic.002G108600 OsFBLD8 - F-box, LRR and FBD domain containing protein, expressed -
6 Sobic.009G228201 - -
7 Sobic.004G193800 hydrolase, alpha/beta fold family domain containing protein, expressed K14759: isochorismate synthase / 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase / 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase / O-succinylbenzoate synthase
8 Sobic.003G060400 transcription regulator, putative, expressed -
9 Sobic.003G117700 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
10 Sobic.006G004000 - -
11 Sobic.009G011500 expressed protein -
12 Sobic.010G077600 gb protein, putative, expressed -
13 Sobic.009G045700 E3 ubiquitin-protein ligase SINA-like, putative, expressed K04506: E3 ubiquitin-protein ligase SIAH1
14 Sobic.004G122500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@dynein light chain type 1 domain containing protein, expressed K10418: dynein light chain LC8-type
15 Sobic.006G204200 putrescine-binding periplasmic protein-related, putative, expressed -
16 Sobic.003G015000 "domain confirmed by Pfam database, expression supported by NCBI EST database, expression induced by BR treatment"(PubMedID : 20499123)@OsGH3.3 - Probable indole-3-acetic acid-amido synthetase, expressed K14487: auxin responsive GH3 gene family
17 Sobic.002G033600 Leucine Rich Repeat family protein, expressed -
18 Sobic.002G056600 START domain containing protein, putative, expressed -
19 Sobic.002G018901 - -
20 Sobic.003G048700 AGC_PVPK_like_kin82y.3 - ACG kinases include homologs to PKA, PKG and PKC, expressed -


Gene co-expression network
sample Sobic006G086900 Sobic006G086900 Sobic010G237650 Sobic010G237650 Sobic006G086900--Sobic010G237650 Sobic002G297800 Sobic002G297800 Sobic006G086900--Sobic002G297800 Sobic005G128000 Sobic005G128000 Sobic006G086900--Sobic005G128000 Sobic009G257300 Sobic009G257300 Sobic006G086900--Sobic009G257300 Sobic002G108600 Sobic002G108600 Sobic006G086900--Sobic002G108600 Sobic009G228201 Sobic009G228201 Sobic006G086900--Sobic009G228201 Sobic004G193800 Sobic004G193800 Sobic006G086900--Sobic004G193800 Sobic003G060400 Sobic003G060400 Sobic006G086900--Sobic003G060400 Sobic003G117700 Sobic003G117700 Sobic006G086900--Sobic003G117700 Sobic002G033600 Sobic002G033600 Sobic010G237650--Sobic002G033600 Sobic003G092066 Sobic003G092066 Sobic010G237650--Sobic003G092066 Sobic002G268900 Sobic002G268900 Sobic010G237650--Sobic002G268900 Sobic006G144000 Sobic006G144000 Sobic010G237650--Sobic006G144000 Sobic007G139400 Sobic007G139400 Sobic010G237650--Sobic007G139400 Sobic006G215100 Sobic006G215100 Sobic010G237650--Sobic006G215100 Sobic010G073600 Sobic010G073600 Sobic010G237650--Sobic010G073600 Sobic010G237650--Sobic005G128000 Sobic009G102000 Sobic009G102000 Sobic010G237650--Sobic009G102000 Sobic002G049000 Sobic002G049000 Sobic002G297800--Sobic002G049000 Sobic003G204000 Sobic003G204000 Sobic002G297800--Sobic003G204000 Sobic002G061400 Sobic002G061400 Sobic002G297800--Sobic002G061400 Sobic008G068800 Sobic008G068800 Sobic002G297800--Sobic008G068800 Sobic009G231300 Sobic009G231300 Sobic002G297800--Sobic009G231300 Sobic002G297800--Sobic009G257300 Sobic004G212800 Sobic004G212800 Sobic002G297800--Sobic004G212800 Sobic002G313300 Sobic002G313300 Sobic002G297800--Sobic002G313300 Sobic009G059600 Sobic009G059600 Sobic002G297800--Sobic009G059600 Sobic002G073300 Sobic002G073300 Sobic005G128000--Sobic002G073300 Sobic004G045566 Sobic004G045566 Sobic005G128000--Sobic004G045566 Sobic001G261537 Sobic001G261537 Sobic005G128000--Sobic001G261537 Sobic005G099150 Sobic005G099150 Sobic005G128000--Sobic005G099150 Sobic006G067100 Sobic006G067100 Sobic005G128000--Sobic006G067100 Sobic002G182300 Sobic002G182300 Sobic005G128000--Sobic002G182300 Sobic005G128000--Sobic010G237650 Sobic010G139301 Sobic010G139301 Sobic005G128000--Sobic010G139301 Sobic008G106600 Sobic008G106600 Sobic005G128000--Sobic008G106600 Sobic003G015000 Sobic003G015000 Sobic009G257300--Sobic003G015000 Sobic002G039600 Sobic002G039600 Sobic009G257300--Sobic002G039600 Sobic007G073400 Sobic007G073400 Sobic009G257300--Sobic007G073400 Sobic009G257300--Sobic009G228201 Sobic002G039500 Sobic002G039500 Sobic009G257300--Sobic002G039500 Sobic008G079100 Sobic008G079100 Sobic009G257300--Sobic008G079100 Sobic007G023700 Sobic007G023700 Sobic009G257300--Sobic007G023700 Sobic004G143700 Sobic004G143700 Sobic009G257300--Sobic004G143700 Sobic009G180200 Sobic009G180200 Sobic009G257300--Sobic009G180200 Sobic007G189800 Sobic007G189800 Sobic002G108600--Sobic007G189800 Sobic005G003200 Sobic005G003200 Sobic002G108600--Sobic005G003200 Sobic006G249000 Sobic006G249000 Sobic002G108600--Sobic006G249000 Sobic001G363100 Sobic001G363100 Sobic002G108600--Sobic001G363100 Sobic010G146200 Sobic010G146200 Sobic002G108600--Sobic010G146200 Sobic005G130100 Sobic005G130100 Sobic002G108600--Sobic005G130100 Sobic002G108600--Sobic009G231300 Sobic009G078500 Sobic009G078500 Sobic002G108600--Sobic009G078500 Sobic003G221200 Sobic003G221200 Sobic002G108600--Sobic003G221200 Sobic009G228201--Sobic003G015000 Sobic010G278500 Sobic010G278500 Sobic009G228201--Sobic010G278500 Sobic009G228201--Sobic009G257300 Sobic009G228201--Sobic008G079100 Sobic009G228201--Sobic004G212800 Sobic008G167300 Sobic008G167300 Sobic009G228201--Sobic008G167300 Sobic010G248200 Sobic010G248200 Sobic009G228201--Sobic010G248200 Sobic001G345333 Sobic001G345333 Sobic009G228201--Sobic001G345333 Sobic006G046000 Sobic006G046000 Sobic009G228201--Sobic006G046000 Sobic003G185250 Sobic003G185250 Sobic004G193800--Sobic003G185250 Sobic004G016500 Sobic004G016500 Sobic004G193800--Sobic004G016500 Sobic003G424100 Sobic003G424100 Sobic004G193800--Sobic003G424100 Sobic004G193800--Sobic008G068800 Sobic007G099500 Sobic007G099500 Sobic004G193800--Sobic007G099500 Sobic003G023400 Sobic003G023400 Sobic004G193800--Sobic003G023400 Sobic004G240900 Sobic004G240900 Sobic004G193800--Sobic004G240900 Sobic010G208500 Sobic010G208500 Sobic004G193800--Sobic010G208500 Sobic004G169501 Sobic004G169501 Sobic004G193800--Sobic004G169501 Sobic006G204200 Sobic006G204200 Sobic003G060400--Sobic006G204200 Sobic001G046600 Sobic001G046600 Sobic003G060400--Sobic001G046600 Sobic009G045700 Sobic009G045700 Sobic003G060400--Sobic009G045700 Sobic003G060400--Sobic007G073400 Sobic003G060400--Sobic002G297800 Sobic003G060400--Sobic004G212800 Sobic009G114600 Sobic009G114600 Sobic003G060400--Sobic009G114600 Sobic003G057800 Sobic003G057800 Sobic003G060400--Sobic003G057800 Sobic004G164600 Sobic004G164600 Sobic003G060400--Sobic004G164600 Sobic008G063000 Sobic008G063000 Sobic003G117700--Sobic008G063000 Sobic003G241200 Sobic003G241200 Sobic003G117700--Sobic003G241200 Sobic003G220200 Sobic003G220200 Sobic003G117700--Sobic003G220200 Sobic003G200200 Sobic003G200200 Sobic003G117700--Sobic003G200200 Sobic003G173950 Sobic003G173950 Sobic003G117700--Sobic003G173950 Sobic007G145200 Sobic007G145200 Sobic003G117700--Sobic007G145200 Sobic003G170100 Sobic003G170100 Sobic003G117700--Sobic003G170100 Sobic001G257300 Sobic001G257300 Sobic003G117700--Sobic001G257300 Sobic001G251700 Sobic001G251700 Sobic003G117700--Sobic001G251700
Octagon: transcription factors


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