Gene annotation
Transcriptome id Sobic.006G102500.1
Synonym Sb06g018610
Functional annotation transporter family protein, putative, expressed
UniProt C6JRT1 , A0A1Z5RDM3
Pfam PF07690
Panther DB PTHR23500 PTHR23500:SF2
NCBI CDD KOG0254; Predicted transporter (major facilitator superfamily)
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane


Orthologs (automatic annotation)
TAIR AT1G34580 : Major facilitator superfamily protein
RAP-DB (Rice) LOC_Os04g38026.1 : transporter family protein, putative, expressed
MaizeGDB (Corn) Zm00025a056183 , Zm00025a011150
Brachypodium KQJ82921 , PNT61203 , KQJ82917 , KQJ82915 , KQJ82919 , KQJ82916
Barley HORVU2Hr1G079620.1 , HORVU2Hr1G079650.4 , HORVU2Hr1G079650.3 , HORVU2Hr1G079650.2 , HORVU2Hr1G079700.4 , HORVU2Hr1G079620.2 , HORVU5Hr1G000380.1 , HORVU2Hr1G079700.3 , HORVU2Hr1G079700.2 , HORVU2Hr1G079700.1 , HORVU2Hr1G079620.3
Wheat TraesCS2B02G338700 , TraesCS2B02G338500 , TraesCS2B02G338700 , TraesCS2B02G338400 , TraesCS2D02G318200 , TraesCS2D02G318500 , TraesCS5A02G515200 , TraesCS2A02G340900 , TraesCS4B02G346400 , TraesCS2A02G340600 , TraesCS2A02G340700 , TraesCS4D02G341400 , TraesCS2D02G318300
Populus -


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cDNA sequences
Sobic.006G102500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G184800 sodium/calcium exchanger protein, putative, expressed K07300: chaA, Ca2+:H+ antiporter
2 Sobic.006G220300 - -
3 Sobic.003G002600 -(PubMedID : 23001790)@GLK2(PubMedID : 24676859)@GLK genes are members of the GARP superfamily and functions in a BS or M cell-type specific manner to regulate the proplastid to chloroplast transition(PubMedID : 22968911)@myb-like DNA-binding domain containing protein, expressed -
4 Sobic.001G037900 cinnamoyl CoA reductase, putative, expressed -
5 Sobic.003G372800 expressed protein -
6 Sobic.002G359000 formin, putative, expressed -
7 Sobic.001G438800 armadillo/beta-catenin repeat family protein, putative, expressed -
8 Sobic.006G220200 CPuORF12 - conserved peptide uORF-containing transcript, expressed K17839: PAO4, PAO3, polyamine oxidase
9 Sobic.010G092600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aquaporin protein, putative, expressed K09874: aquaporin NIP
10 Sobic.003G031800 ZOS1-04 - C2H2 zinc finger protein, expressed -
11 Sobic.006G174975 - -
12 Sobic.009G155700 - -
13 Sobic.002G110300 Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@UBX domain-containing protein, putative, expressed -
14 Sobic.002G134600 nucleic acid binding protein, putative, expressed -
15 Sobic.001G045600 remorin, putative, expressed -
16 Sobic.007G160200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@-(PubMedID : 26976818)@mitochondrial carrier protein, putative, expressed K15104: SLC25A11, solute carrier family 25 (mitochondrial oxoglutarate transporter), member 11
17 Sobic.003G424400 Spotted leaf protein(PubMedID : 24906815)@armadillo repeat-containing protein, putative, expressed K08332: vacuolar protein 8
18 Sobic.006G205200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
19 Sobic.010G159400 amino acid permease family protein, putative, expressed K03294: basic amino acid/polyamine antiporter, APA family
20 Sobic.003G298600 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root"(PubMedID : 20499123)@auxin response factor, putative, expressed -


Gene co-expression network
sample Sobic006G102500 Sobic006G102500 Sobic003G184800 Sobic003G184800 Sobic006G102500--Sobic003G184800 Sobic006G220300 Sobic006G220300 Sobic006G102500--Sobic006G220300 Sobic003G002600 Sobic003G002600 Sobic006G102500--Sobic003G002600 Sobic001G037900 Sobic001G037900 Sobic006G102500--Sobic001G037900 Sobic003G372800 Sobic003G372800 Sobic006G102500--Sobic003G372800 Sobic002G359000 Sobic002G359000 Sobic006G102500--Sobic002G359000 Sobic001G438800 Sobic001G438800 Sobic006G102500--Sobic001G438800 Sobic006G220200 Sobic006G220200 Sobic006G102500--Sobic006G220200 Sobic010G092600 Sobic010G092600 Sobic006G102500--Sobic010G092600 Sobic002G134600 Sobic002G134600 Sobic003G184800--Sobic002G134600 Sobic001G122832 Sobic001G122832 Sobic003G184800--Sobic001G122832 Sobic003G309200 Sobic003G309200 Sobic003G184800--Sobic003G309200 Sobic010G149200 Sobic010G149200 Sobic003G184800--Sobic010G149200 Sobic001G126100 Sobic001G126100 Sobic003G184800--Sobic001G126100 Sobic010G223700 Sobic010G223700 Sobic003G184800--Sobic010G223700 Sobic010G076300 Sobic010G076300 Sobic003G184800--Sobic010G076300 Sobic001G298600 Sobic001G298600 Sobic003G184800--Sobic001G298600 Sobic004G233000 Sobic004G233000 Sobic003G184800--Sobic004G233000 Sobic006G220300--Sobic006G220200 Sobic001G110900 Sobic001G110900 Sobic006G220300--Sobic001G110900 Sobic009G155700 Sobic009G155700 Sobic006G220300--Sobic009G155700 Sobic002G216400 Sobic002G216400 Sobic006G220300--Sobic002G216400 Sobic001G087700 Sobic001G087700 Sobic006G220300--Sobic001G087700 Sobic004G332100 Sobic004G332100 Sobic006G220300--Sobic004G332100 Sobic001G470900 Sobic001G470900 Sobic006G220300--Sobic001G470900 Sobic001G045600 Sobic001G045600 Sobic006G220300--Sobic001G045600 Sobic010G260300 Sobic010G260300 Sobic006G220300--Sobic010G260300 Sobic003G162100 Sobic003G162100 Sobic003G002600--Sobic003G162100 Sobic003G403500 Sobic003G403500 Sobic003G002600--Sobic003G403500 Sobic001G236400 Sobic001G236400 Sobic003G002600--Sobic001G236400 Sobic004G131900 Sobic004G131900 Sobic003G002600--Sobic004G131900 Sobic005G012200 Sobic005G012200 Sobic003G002600--Sobic005G012200 Sobic006G065900 Sobic006G065900 Sobic003G002600--Sobic006G065900 Sobic002G201900 Sobic002G201900 Sobic003G002600--Sobic002G201900 Sobic004G251300 Sobic004G251300 Sobic003G002600--Sobic004G251300 Sobic001G414000 Sobic001G414000 Sobic003G002600--Sobic001G414000 Sobic004G327800 Sobic004G327800 Sobic001G037900--Sobic004G327800 Sobic001G006400 Sobic001G006400 Sobic001G037900--Sobic001G006400 Sobic010G080300 Sobic010G080300 Sobic001G037900--Sobic010G080300 Sobic010G186400 Sobic010G186400 Sobic001G037900--Sobic010G186400 Sobic003G439100 Sobic003G439100 Sobic001G037900--Sobic003G439100 Sobic001G295300 Sobic001G295300 Sobic001G037900--Sobic001G295300 Sobic003G175100 Sobic003G175100 Sobic001G037900--Sobic003G175100 Sobic003G375900 Sobic003G375900 Sobic001G037900--Sobic003G375900 Sobic001G466900 Sobic001G466900 Sobic001G037900--Sobic001G466900 Sobic006G184500 Sobic006G184500 Sobic003G372800--Sobic006G184500 Sobic003G109700 Sobic003G109700 Sobic003G372800--Sobic003G109700 Sobic003G372800--Sobic002G134600 Sobic003G031800 Sobic003G031800 Sobic003G372800--Sobic003G031800 Sobic001G362200 Sobic001G362200 Sobic003G372800--Sobic001G362200 Sobic001G312900 Sobic001G312900 Sobic003G372800--Sobic001G312900 Sobic003G035100 Sobic003G035100 Sobic003G372800--Sobic003G035100 Sobic002G350600 Sobic002G350600 Sobic003G372800--Sobic002G350600 Sobic002G110300 Sobic002G110300 Sobic003G372800--Sobic002G110300 Sobic002G359000--Sobic001G045600 Sobic001G342600 Sobic001G342600 Sobic002G359000--Sobic001G342600 Sobic002G359000--Sobic001G110900 Sobic002G359000--Sobic006G220300 Sobic006G025300 Sobic006G025300 Sobic002G359000--Sobic006G025300 Sobic003G198150 Sobic003G198150 Sobic002G359000--Sobic003G198150 Sobic002G359000--Sobic010G092600 Sobic002G359000--Sobic003G035100 Sobic007G152800 Sobic007G152800 Sobic002G359000--Sobic007G152800 Sobic002G009900 Sobic002G009900 Sobic001G438800--Sobic002G009900 Sobic001G450800 Sobic001G450800 Sobic001G438800--Sobic001G450800 Sobic001G430700 Sobic001G430700 Sobic001G438800--Sobic001G430700 Sobic003G361300 Sobic003G361300 Sobic001G438800--Sobic003G361300 Sobic001G438800--Sobic003G198150 Sobic009G037800 Sobic009G037800 Sobic001G438800--Sobic009G037800 Sobic009G195800 Sobic009G195800 Sobic001G438800--Sobic009G195800 Sobic004G245900 Sobic004G245900 Sobic001G438800--Sobic004G245900 Sobic003G198200 Sobic003G198200 Sobic001G438800--Sobic003G198200 Sobic006G220200--Sobic006G220300 Sobic006G220200--Sobic010G092600 Sobic001G391300 Sobic001G391300 Sobic006G220200--Sobic001G391300 Sobic002G148700 Sobic002G148700 Sobic006G220200--Sobic002G148700 Sobic006G220200--Sobic002G216400 Sobic001G496300 Sobic001G496300 Sobic006G220200--Sobic001G496300 Sobic003G238000 Sobic003G238000 Sobic006G220200--Sobic003G238000 Sobic006G220200--Sobic001G110900 Sobic006G220200--Sobic009G155700 Sobic001G125100 Sobic001G125100 Sobic010G092600--Sobic001G125100 Sobic010G006700 Sobic010G006700 Sobic010G092600--Sobic010G006700 Sobic003G078501 Sobic003G078501 Sobic010G092600--Sobic003G078501 Sobic010G092600--Sobic001G045600 Sobic004G331300 Sobic004G331300 Sobic010G092600--Sobic004G331300 Sobic007G217300 Sobic007G217300 Sobic010G092600--Sobic007G217300 Sobic010G092600--Sobic006G220200 Sobic009G000700 Sobic009G000700 Sobic010G092600--Sobic009G000700 Sobic004G155150 Sobic004G155150 Sobic010G092600--Sobic004G155150
Octagon: transcription factors


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