Gene annotation
Transcriptome id Sobic.006G123300.1
Synonym PMSR1, ATMSRA1, Sb06g020370
Functional annotation peptide methionine sulfoxide reductase, putative, expressed
UniProt C5YAT7
Pfam PF01625
Panther DB PTHR10173 PTHR10173:SF39
NCBI CDD KOG1635; Peptide methionine sulfoxide reductase
KEGG Orthology K07304; peptide-methionine (S)-S-oxide reductase
Gene Ontology GO:0008113; peptide-methionine (S)-S-oxide reductase activity GO:0016671oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor GO:0006979response to oxidative stress


Orthologs (automatic annotation)
TAIR AT5G61640 : peptidemethionine sulfoxide reductase 1
RAP-DB (Rice) LOC_Os04g40600.1 : peptide methionine sulfoxide reductase, putative, expressed
MaizeGDB (Corn) Zm00025a010971
Brachypodium PNT61313 , PNT61312
Barley HORVU2Hr1G083170.1 , HORVU2Hr1G083170.2
Wheat TraesCS2A02G323300 , TraesCS2D02G339600 , TraesCS2B02G359300
Populus -


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cDNA sequences
Sobic.006G123300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G083500 pyridine nucleotide-disulphide oxidoreductase domain containing protein, expressed K17872: NDC1, demethylphylloquinone reductase
2 Sobic.001G131400 thioesterase family protein, putative, expressed -
3 Sobic.001G393500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Ca2+ sensors group(PubMedID : 30367619)@EF hand family protein, putative, expressed K02183: calmodulin
4 Sobic.010G180600 OsIAA23 - Auxin-responsive Aux/IAA gene family member, expressed K14484: auxin-responsive protein IAA
5 Sobic.006G180200 transmembrane amino acid transporter protein, putative, expressed K14209: SLC36A, solute carrier family 36 (proton-coupled amino acid transporter)
6 Sobic.001G428200 expressed protein -
7 Sobic.009G185800 translation initiation factor SUI1, putative, expressed K03113: EIF1, translation initiation factor 1
8 Sobic.006G206700 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@leucine rich repeat containing protein, expressed -
9 Sobic.003G279300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phosphoethanolamine/phosphocholine phosphatase, putative, expressed K06124: phosphoethanolamine/phosphocholine phosphatase
10 Sobic.010G135000 thioredoxin reductase 2, putative, expressed K00384: trxB, thioredoxin reductase (NADPH)
11 Sobic.010G178200 hemoglobin-like protein HbO, putative, expressed -
12 Sobic.003G110200 NADP-dependent oxidoreductase, putative, expressed K07119: PTGR3, prostaglandin reductase 3
13 Sobic.010G019900 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
14 Sobic.002G119900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@dirigent, putative, expressed -
15 Sobic.003G130800 pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase
16 Sobic.004G330700 CAF1 family ribonuclease containing protein, putative, expressed K12581: CNOT7_8, CAF1, CCR4-NOT transcription complex subunit 7/8
17 Sobic.004G219300 GLTP domain containing protein, putative, expressed -
18 Sobic.004G332900 protein phosphatase 2C, putative, expressed K14803: protein phosphatase PTC2/3
19 Sobic.004G308400 xyloglucan fucosyltransferase, putative, expressed K13681: xyloglucan fucosyltransferase
20 Sobic.001G499300 high-affinity nickel-transport family protein, putative, expressed -


Gene co-expression network
sample Sobic006G123300 Sobic006G123300 Sobic010G083500 Sobic010G083500 Sobic006G123300--Sobic010G083500 Sobic001G131400 Sobic001G131400 Sobic006G123300--Sobic001G131400 Sobic001G393500 Sobic001G393500 Sobic006G123300--Sobic001G393500 Sobic010G180600 Sobic010G180600 Sobic006G123300--Sobic010G180600 Sobic006G180200 Sobic006G180200 Sobic006G123300--Sobic006G180200 Sobic001G428200 Sobic001G428200 Sobic006G123300--Sobic001G428200 Sobic009G185800 Sobic009G185800 Sobic006G123300--Sobic009G185800 Sobic006G206700 Sobic006G206700 Sobic006G123300--Sobic006G206700 Sobic003G279300 Sobic003G279300 Sobic006G123300--Sobic003G279300 Sobic010G165500 Sobic010G165500 Sobic010G083500--Sobic010G165500 Sobic010G083500--Sobic006G123300 Sobic010G050800 Sobic010G050800 Sobic010G083500--Sobic010G050800 Sobic010G232100 Sobic010G232100 Sobic010G083500--Sobic010G232100 Sobic007G088000 Sobic007G088000 Sobic010G083500--Sobic007G088000 Sobic010G277800 Sobic010G277800 Sobic010G083500--Sobic010G277800 Sobic004G272700 Sobic004G272700 Sobic010G083500--Sobic004G272700 Sobic010G083500--Sobic009G185800 Sobic001G357300 Sobic001G357300 Sobic010G083500--Sobic001G357300 Sobic001G131400--Sobic006G180200 Sobic001G353600 Sobic001G353600 Sobic001G131400--Sobic001G353600 Sobic010G178200 Sobic010G178200 Sobic001G131400--Sobic010G178200 Sobic009G038100 Sobic009G038100 Sobic001G131400--Sobic009G038100 Sobic001G074300 Sobic001G074300 Sobic001G131400--Sobic001G074300 Sobic009G176000 Sobic009G176000 Sobic001G131400--Sobic009G176000 Sobic004G151400 Sobic004G151400 Sobic001G131400--Sobic004G151400 Sobic008G189300 Sobic008G189300 Sobic001G131400--Sobic008G189300 Sobic010G135000 Sobic010G135000 Sobic001G131400--Sobic010G135000 Sobic001G393500--Sobic003G279300 Sobic001G499300 Sobic001G499300 Sobic001G393500--Sobic001G499300 Sobic004G243100 Sobic004G243100 Sobic001G393500--Sobic004G243100 Sobic001G018300 Sobic001G018300 Sobic001G393500--Sobic001G018300 Sobic006G056400 Sobic006G056400 Sobic001G393500--Sobic006G056400 Sobic003G279500 Sobic003G279500 Sobic001G393500--Sobic003G279500 Sobic002G251000 Sobic002G251000 Sobic001G393500--Sobic002G251000 Sobic003G202200 Sobic003G202200 Sobic001G393500--Sobic003G202200 Sobic004G187900 Sobic004G187900 Sobic001G393500--Sobic004G187900 Sobic010G180600--Sobic001G393500 Sobic010G180600--Sobic003G202200 Sobic003G144900 Sobic003G144900 Sobic010G180600--Sobic003G144900 Sobic001G481100 Sobic001G481100 Sobic010G180600--Sobic001G481100 Sobic001G387900 Sobic001G387900 Sobic010G180600--Sobic001G387900 Sobic004G304625 Sobic004G304625 Sobic010G180600--Sobic004G304625 Sobic004G141200 Sobic004G141200 Sobic010G180600--Sobic004G141200 Sobic004G301000 Sobic004G301000 Sobic010G180600--Sobic004G301000 Sobic005G011300 Sobic005G011300 Sobic010G180600--Sobic005G011300 Sobic003G130800 Sobic003G130800 Sobic006G180200--Sobic003G130800 Sobic006G180200--Sobic010G135000 Sobic006G180200--Sobic009G185800 Sobic004G055200 Sobic004G055200 Sobic006G180200--Sobic004G055200 Sobic006G180200--Sobic001G131400 Sobic008G033600 Sobic008G033600 Sobic006G180200--Sobic008G033600 Sobic006G180200--Sobic004G187900 Sobic003G181500 Sobic003G181500 Sobic006G180200--Sobic003G181500 Sobic006G180200--Sobic008G189300 Sobic001G087900 Sobic001G087900 Sobic001G428200--Sobic001G087900 Sobic004G351500 Sobic004G351500 Sobic001G428200--Sobic004G351500 Sobic009G131100 Sobic009G131100 Sobic001G428200--Sobic009G131100 Sobic003G369500 Sobic003G369500 Sobic001G428200--Sobic003G369500 Sobic001G428200--Sobic001G353600 Sobic003G325500 Sobic003G325500 Sobic001G428200--Sobic003G325500 Sobic004G225500 Sobic004G225500 Sobic001G428200--Sobic004G225500 Sobic004G060600 Sobic004G060600 Sobic001G428200--Sobic004G060600 Sobic009G198500 Sobic009G198500 Sobic001G428200--Sobic009G198500 Sobic001G459200 Sobic001G459200 Sobic009G185800--Sobic001G459200 Sobic004G049900 Sobic004G049900 Sobic009G185800--Sobic004G049900 Sobic003G253000 Sobic003G253000 Sobic009G185800--Sobic003G253000 Sobic009G185800--Sobic003G130800 Sobic006G108400 Sobic006G108400 Sobic009G185800--Sobic006G108400 Sobic003G350300 Sobic003G350300 Sobic009G185800--Sobic003G350300 Sobic004G330700 Sobic004G330700 Sobic009G185800--Sobic004G330700 Sobic004G272800 Sobic004G272800 Sobic009G185800--Sobic004G272800 Sobic009G185800--Sobic003G181500 Sobic006G206700--Sobic003G325500 Sobic009G036800 Sobic009G036800 Sobic006G206700--Sobic009G036800 Sobic006G206700--Sobic001G428200 Sobic001G128100 Sobic001G128100 Sobic006G206700--Sobic001G128100 Sobic003G253800 Sobic003G253800 Sobic006G206700--Sobic003G253800 Sobic004G209900 Sobic004G209900 Sobic006G206700--Sobic004G209900 Sobic006G206700--Sobic003G369500 Sobic006G206700--Sobic009G131100 Sobic006G168300 Sobic006G168300 Sobic006G206700--Sobic006G168300 Sobic003G279300--Sobic001G393500 Sobic003G279300--Sobic003G279500 Sobic009G184100 Sobic009G184100 Sobic003G279300--Sobic009G184100 Sobic008G066401 Sobic008G066401 Sobic003G279300--Sobic008G066401 Sobic003G268600 Sobic003G268600 Sobic003G279300--Sobic003G268600 Sobic009G145700 Sobic009G145700 Sobic003G279300--Sobic009G145700 Sobic009G145600 Sobic009G145600 Sobic003G279300--Sobic009G145600 Sobic001G318700 Sobic001G318700 Sobic003G279300--Sobic001G318700 Sobic006G235000 Sobic006G235000 Sobic003G279300--Sobic006G235000
Octagon: transcription factors


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