Gene annotation
Transcriptome id Sobic.006G133500.1
Synonym Sb06g021330
Functional annotation expressed protein
UniProt C5YBF8
Pfam -
Panther DB PTHR36743 PTHR36743:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G43540 : -
RAP-DB (Rice) LOC_Os04g41800.1 : expressed protein
MaizeGDB (Corn) Zm00025a010835
Brachypodium KQJ83356
Barley -
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.006G133500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G066300 OsRCI2-8 - Putative low temperature and salt responsive protein, expressed -
2 Sobic.006G181700 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed K17794: mitochondrial import inner membrane translocase subunit TIM23
3 Sobic.001G434400 ufm1-conjugating enzyme 1, putative, expressed K12165: ufm1-conjugating enzyme 1
4 Sobic.004G137900 wiskott-Aldrich syndrome protein family member 2, putative, expressed -
5 Sobic.001G130400 expressed protein -
6 Sobic.010G021100 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@peptidyl-prolyl cis-trans isomerase, putative, expressed K12734: peptidyl-prolyl cis-trans isomerase-like 3
7 Sobic.010G267500 bZIP orthologous(PubMedID : 28671251)@E2F-related protein, putative, expressed -
8 Sobic.002G241500 tentative name(PubMedID : 31536532)@core histone H2A/H2B/H3/H4, putative, expressed -
9 Sobic.003G016400 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
10 Sobic.002G371400 stress responsive A/B Barrel domain containing protein, expressed -
11 Sobic.003G358400 3-oxo-5-alpha-steroid 4-dehydrogenase, putative, expressed K09591: steroid 5-alpha-reductase
12 Sobic.004G012800 DNA-directed RNA polymerase II subunit RPB4, putative, expressed K03012: RPB4, DNA-directed RNA polymerase II subunit RPB4
13 Sobic.009G131100 transmembrane BAX inhibitor motif-containing protein, putative, expressed K06890: uncharacterized protein
14 Sobic.004G018200 glycine-rich protein 2, putative, expressed -
15 Sobic.006G207500 expressed protein -
16 Sobic.004G217600 expressed protein -
17 Sobic.003G003000 DNA-binding protein-related, putative, expressed K07466: RFA1, RPA1, replication factor A1
18 Sobic.003G283300 expressed protein -
19 Sobic.003G265400 threonine synthase, chloroplast precursor, putative, expressed K01733: threonine synthase
20 Sobic.005G044100 harpin-induced protein 1 domain containing protein, expressed -


Gene co-expression network
sample Sobic006G133500 Sobic006G133500 Sobic010G066300 Sobic010G066300 Sobic006G133500--Sobic010G066300 Sobic006G181700 Sobic006G181700 Sobic006G133500--Sobic006G181700 Sobic001G434400 Sobic001G434400 Sobic006G133500--Sobic001G434400 Sobic004G137900 Sobic004G137900 Sobic006G133500--Sobic004G137900 Sobic001G130400 Sobic001G130400 Sobic006G133500--Sobic001G130400 Sobic010G021100 Sobic010G021100 Sobic006G133500--Sobic010G021100 Sobic010G267500 Sobic010G267500 Sobic006G133500--Sobic010G267500 Sobic002G241500 Sobic002G241500 Sobic006G133500--Sobic002G241500 Sobic003G016400 Sobic003G016400 Sobic006G133500--Sobic003G016400 Sobic002G427900 Sobic002G427900 Sobic010G066300--Sobic002G427900 Sobic004G352900 Sobic004G352900 Sobic010G066300--Sobic004G352900 Sobic009G156300 Sobic009G156300 Sobic010G066300--Sobic009G156300 Sobic010G066300--Sobic010G021100 Sobic001G285000 Sobic001G285000 Sobic010G066300--Sobic001G285000 Sobic010G045833 Sobic010G045833 Sobic010G066300--Sobic010G045833 Sobic002G254650 Sobic002G254650 Sobic010G066300--Sobic002G254650 Sobic001G526900 Sobic001G526900 Sobic010G066300--Sobic001G526900 Sobic003G317200 Sobic003G317200 Sobic010G066300--Sobic003G317200 Sobic004G018200 Sobic004G018200 Sobic006G181700--Sobic004G018200 Sobic009G232500 Sobic009G232500 Sobic006G181700--Sobic009G232500 Sobic006G181700--Sobic002G241500 Sobic003G283300 Sobic003G283300 Sobic006G181700--Sobic003G283300 Sobic001G132900 Sobic001G132900 Sobic006G181700--Sobic001G132900 Sobic003G003000 Sobic003G003000 Sobic006G181700--Sobic003G003000 Sobic006G181700--Sobic003G016400 Sobic010G194200 Sobic010G194200 Sobic006G181700--Sobic010G194200 Sobic001G188700 Sobic001G188700 Sobic006G181700--Sobic001G188700 Sobic006G276200 Sobic006G276200 Sobic001G434400--Sobic006G276200 Sobic010G088300 Sobic010G088300 Sobic001G434400--Sobic010G088300 Sobic004G012800 Sobic004G012800 Sobic001G434400--Sobic004G012800 Sobic006G231500 Sobic006G231500 Sobic001G434400--Sobic006G231500 Sobic004G242100 Sobic004G242100 Sobic001G434400--Sobic004G242100 Sobic001G434400--Sobic004G137900 Sobic006G109700 Sobic006G109700 Sobic001G434400--Sobic006G109700 Sobic001G434400--Sobic001G130400 Sobic005G110526 Sobic005G110526 Sobic001G434400--Sobic005G110526 Sobic004G137900--Sobic004G012800 Sobic006G231700 Sobic006G231700 Sobic004G137900--Sobic006G231700 Sobic003G358300 Sobic003G358300 Sobic004G137900--Sobic003G358300 Sobic006G013900 Sobic006G013900 Sobic004G137900--Sobic006G013900 Sobic002G331300 Sobic002G331300 Sobic004G137900--Sobic002G331300 Sobic001G286300 Sobic001G286300 Sobic004G137900--Sobic001G286300 Sobic009G120100 Sobic009G120100 Sobic004G137900--Sobic009G120100 Sobic003G129800 Sobic003G129800 Sobic004G137900--Sobic003G129800 Sobic005G111100 Sobic005G111100 Sobic004G137900--Sobic005G111100 Sobic004G063500 Sobic004G063500 Sobic001G130400--Sobic004G063500 Sobic001G130400--Sobic009G120100 Sobic001G130400--Sobic004G137900 Sobic001G066700 Sobic001G066700 Sobic001G130400--Sobic001G066700 Sobic001G130400--Sobic003G358300 Sobic001G130400--Sobic005G111100 Sobic009G070200 Sobic009G070200 Sobic001G130400--Sobic009G070200 Sobic003G325700 Sobic003G325700 Sobic001G130400--Sobic003G325700 Sobic001G130400--Sobic001G434400 Sobic001G037000 Sobic001G037000 Sobic010G021100--Sobic001G037000 Sobic010G021100--Sobic010G066300 Sobic004G247200 Sobic004G247200 Sobic010G021100--Sobic004G247200 Sobic001G204900 Sobic001G204900 Sobic010G021100--Sobic001G204900 Sobic010G217900 Sobic010G217900 Sobic010G021100--Sobic010G217900 Sobic009G222600 Sobic009G222600 Sobic010G021100--Sobic009G222600 Sobic002G205300 Sobic002G205300 Sobic010G021100--Sobic002G205300 Sobic001G047700 Sobic001G047700 Sobic010G021100--Sobic001G047700 Sobic001G422900 Sobic001G422900 Sobic010G021100--Sobic001G422900 Sobic006G207500 Sobic006G207500 Sobic010G267500--Sobic006G207500 Sobic004G060600 Sobic004G060600 Sobic010G267500--Sobic004G060600 Sobic007G097900 Sobic007G097900 Sobic010G267500--Sobic007G097900 Sobic003G369500 Sobic003G369500 Sobic010G267500--Sobic003G369500 Sobic003G402600 Sobic003G402600 Sobic010G267500--Sobic003G402600 Sobic007G226100 Sobic007G226100 Sobic010G267500--Sobic007G226100 Sobic003G361500 Sobic003G361500 Sobic010G267500--Sobic003G361500 Sobic004G001400 Sobic004G001400 Sobic010G267500--Sobic004G001400 Sobic008G137600 Sobic008G137600 Sobic010G267500--Sobic008G137600 Sobic006G281200 Sobic006G281200 Sobic002G241500--Sobic006G281200 Sobic010G001800 Sobic010G001800 Sobic002G241500--Sobic010G001800 Sobic010G159100 Sobic010G159100 Sobic002G241500--Sobic010G159100 Sobic002G241500--Sobic003G003000 Sobic002G241500--Sobic003G283300 Sobic002G361900 Sobic002G361900 Sobic002G241500--Sobic002G361900 Sobic002G241500--Sobic006G181700 Sobic008G127500 Sobic008G127500 Sobic002G241500--Sobic008G127500 Sobic001G110300 Sobic001G110300 Sobic002G241500--Sobic001G110300 Sobic003G016400--Sobic003G003000 Sobic008G008300 Sobic008G008300 Sobic003G016400--Sobic008G008300 Sobic003G016400--Sobic001G132900 Sobic001G136500 Sobic001G136500 Sobic003G016400--Sobic001G136500 Sobic003G016400--Sobic006G181700 Sobic010G079800 Sobic010G079800 Sobic003G016400--Sobic010G079800 Sobic004G275100 Sobic004G275100 Sobic003G016400--Sobic004G275100 Sobic008G107900 Sobic008G107900 Sobic003G016400--Sobic008G107900 Sobic003G016400--Sobic006G276200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.