Gene annotation
Transcriptome id Sobic.006G176700.1
Synonym PIP aquaporin, PIP1;3/1;4, PIP1, SbPIP1;3/1;4;plasma membrane intrinsic protein/aquaporin, Sb06g025150, PIP1D, 5
Functional annotation similar to Aquaporin PIP1-3/PIP1-4 (PubMedID : 29862293)
up-regulated by silicon application (PubMedID : 24879770)
Up-regulated by osmotic stress. (PubMedID : 24879770)
aquaporin protein, putative, expressed
UniProt C5YDX2
Pfam PF00230
Panther DB PTHR19139 PTHR19139:SF146
NCBI CDD KOG0223; Aquaporin (major intrinsic protein family)
KEGG Orthology K09872; aquaporin PIP
Gene Ontology GO:0016020; membrane GO:0006810transport GO:0005215transporter activity


Orthologs (automatic annotation)
TAIR AT4G00430 : plasma membrane intrinsic protein 1;4
RAP-DB (Rice) LOC_Os02g44630.1 : aquaporin protein, putative, expressed
MaizeGDB (Corn) Zm00025a021083 , Zm00025a021439 , Zm00025a032250 , Zm00025a049510 , Zm00025a032042 , Zm00025a010237 , Zm00025a032750 , Zm00025a010642 , Zm00025a013554 , Zm00025a045837
Brachypodium KQJ84016 , KQJ83644 , KQK01461 , KQK01462 , KQK00428 , KQK00718 , KQK16443 , KQK16441
Barley HORVU5Hr1G029550.1 , HORVU5Hr1G029550.2 , HORVU5Hr1G029550.3 , HORVU5Hr1G029550.4 , HORVU5Hr1G029550.5 , HORVU5Hr1G029550.6 , HORVU5Hr1G029550.7 , HORVU2Hr1G010990.4 , HORVU2Hr1G010990.3 , HORVU2Hr1G010990.2 , HORVU2Hr1G010990.1 , HORVU6Hr1G092960.12 , HORVU6Hr1G092960.13 , HORVU6Hr1G092960.10 , HORVU6Hr1G058930.9 , HORVU6Hr1G058930.8 , HORVU6Hr1G058930.4 , HORVU6Hr1G058930.1 , HORVU0Hr1G011280.6 , HORVU0Hr1G011280.4 , HORVU0Hr1G011280.5 , HORVU0Hr1G011280.2 , HORVU0Hr1G011280.3 , HORVU0Hr1G011280.1 , HORVU2Hr1G089940.14 , HORVU2Hr1G089940.15 , HORVU2Hr1G089940.16 , HORVU2Hr1G089940.17 , HORVU2Hr1G089940.10 , HORVU2Hr1G089940.11 , HORVU2Hr1G089940.12 , HORVU2Hr1G089940.13 , HORVU5Hr1G027240.4 , HORVU5Hr1G027240.5 , HORVU5Hr1G027240.2 , HORVU5Hr1G027240.3 , HORVU5Hr1G027240.1 , HORVU0Hr1G014490.4 , HORVU0Hr1G014490.5 , HORVU0Hr1G014490.6 , HORVU0Hr1G014490.7 , HORVU6Hr1G058930.20 , HORVU0Hr1G014490.1 , HORVU0Hr1G014490.2 , HORVU0Hr1G014490.3 , HORVU5Hr1G055200.7 , HORVU5Hr1G055200.6 , HORVU5Hr1G055200.5 , HORVU5Hr1G055200.4 , HORVU5Hr1G055200.3 , HORVU5Hr1G055200.2 , HORVU5Hr1G055200.1 , HORVU5Hr1G055200.8 , HORVU6Hr1G058930.19 , HORVU6Hr1G058930.18 , HORVU2Hr1G089940.20 , HORVU6Hr1G058930.11 , HORVU6Hr1G058930.10 , HORVU6Hr1G058930.13 , HORVU6Hr1G058930.12 , HORVU6Hr1G058930.15 , HORVU6Hr1G058930.14 , HORVU6Hr1G058930.17 , HORVU6Hr1G058930.16 , HORVU6Hr1G092960.4 , HORVU6Hr1G092960.5 , HORVU6Hr1G092960.6 , HORVU2Hr1G038740.11 , HORVU2Hr1G038740.16 , HORVU6Hr1G092960.1 , HORVU2Hr1G096360.14 , HORVU2Hr1G096360.15 , HORVU2Hr1G038740.18 , HORVU6Hr1G092960.9 , HORVU2Hr1G096360.12 , HORVU2Hr1G096360.13 , HORVU6Hr1G092970.3 , HORVU6Hr1G092970.2 , HORVU6Hr1G092970.4 , HORVU5Hr1G084230.1 , HORVU5Hr1G084230.2 , HORVU5Hr1G084230.4 , HORVU2Hr1G089940.18 , HORVU2Hr1G089940.19 , HORVU2Hr1G096360.6 , HORVU2Hr1G096360.7 , HORVU2Hr1G096360.4 , HORVU2Hr1G096360.5 , HORVU2Hr1G096360.2 , HORVU2Hr1G096360.3 , HORVU2Hr1G096360.1 , HORVU2Hr1G096360.8 , HORVU2Hr1G096360.9 , HORVU2Hr1G089940.6 , HORVU2Hr1G089940.7 , HORVU2Hr1G089940.4 , HORVU2Hr1G089940.5 , HORVU2Hr1G089940.2 , HORVU2Hr1G089940.3 , HORVU2Hr1G089940.1 , HORVU5Hr1G125600.1 , HORVU2Hr1G038740.8 , HORVU6Hr1G064140.7 , HORVU2Hr1G038740.1 , HORVU2Hr1G038740.2 , HORVU2Hr1G038740.3 , HORVU6Hr1G064140.3 , HORVU2Hr1G038740.5 , HORVU2Hr1G038740.6 , HORVU2Hr1G038740.7 , HORVU6Hr1G014300.1 , HORVU2Hr1G089940.8 , HORVU2Hr1G038740.12 , HORVU2Hr1G038740.10 , HORVU6Hr1G092960.7 , HORVU6Hr1G064140.6 , HORVU6Hr1G064140.5 , HORVU6Hr1G064140.4 , HORVU2Hr1G038740.14 , HORVU2Hr1G038740.15 , HORVU6Hr1G064140.2 , HORVU6Hr1G064140.1 , HORVU2Hr1G096360.16 , HORVU6Hr1G058930.21 , HORVU2Hr1G096360.10 , HORVU2Hr1G096360.11
Wheat TraesCS2D02G376100 , TraesCS5D02G185400 , TraesCS6B02G398000 , TraesCS2A02G198500 , TraesCS6B02G259000 , TraesCS2B02G605900 , TraesCS5B02G332500 , TraesCS2D02G206300 , TraesCS6B02G279200 , TraesCS6D02G389400 , TraesCS6D02G227500 , TraesCS6D02G212900 , TraesCS5B02G178700 , TraesCS6A02G405700 , TraesCS6B02G450000 , TraesCS2D02G404800 , TraesCS2B02G425600 , TraesCS5D02G112500 , TraesCS5A02G181000 , TraesCS2D02G376000 , TraesCS2D02G376000 , TraesCS5A02G100000 , TraesCS2A02G379900 , TraesCS5D02G338200 , TraesCS2D02G404800 , TraesCS2B02G396700 , TraesCS2B02G396700 , TraesCS6B02G450200 , TraesCS5A02G332300 , TraesCS6A02G222100 , TraesCS6A02G245100 , TraesCS2B02G225900 , TraesCS2A02G407700 , TraesCS2A02G407700 , TraesCS2B02G077700 , TraesCS2A02G065700 , TraesCS6A02G405600 , TraesCS6D02G389500 , TraesCS2D02G063900 , TraesCS2A02G379800
Populus -


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cDNA sequences
Sobic.006G176700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G288700 similar to Aquaporin PIP1-3/PIP1-4(PubMedID : 29862293)@up-regulated by silicon application(PubMedID : 24879770)@Up-regulated by osmotic stress.(PubMedID : 24879770)@aquaporin protein, putative, expressed K09872: aquaporin PIP
2 Sobic.004G222000 similar to Aquaporin PIP2-3(PubMedID : 29862293)@-(PubMedID : 24879770)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Up-regulated by osmotic stress.(PubMedID : 24879770)@aquaporin protein, putative, expressed K09872: aquaporin PIP
3 Sobic.002G124700 up-regulated by silicon application(PubMedID : 24879770)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Up-regulated by osmotic stress.(PubMedID : 24879770)@aquaporin protein, putative, expressed K09872: aquaporin PIP
4 Sobic.003G305601 - -
5 Sobic.001G505100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aquaporin protein, putative, expressed K09873: aquaporin TIP
6 Sobic.009G215000 - -
7 Sobic.001G084100 UDP-glucose 6-dehydrogenase 5(PubMedID : 26186930)@UDP-glucose 6-dehydrogenase, putative, expressed K00012: UGDH, UDPglucose 6-dehydrogenase
8 Sobic.002G270000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@BAG domain-containing protein, putative, expressed -
9 Sobic.004G334800 vacuolar protein sorting 55 family protein, putative, expressed -
10 Sobic.001G069800 tubulin/FtsZ domain containing protein, putative, expressed K07375: tubulin beta
11 Sobic.006G156000 ferredoxin-thioredoxin reductase, variable chain, putative, expressed -
12 Sobic.004G220400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Lyase(PubMedID : 30367619)@phenylalanine ammonia-lyase, putative, expressed K10775: phenylalanine ammonia-lyase
13 Sobic.009G002400 polygalacturonase inhibitor precursor, putative, expressed -
14 Sobic.003G305700 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
15 Sobic.009G195900 OsFBT9 - F-box and tubby domain containing protein, expressed -
16 Sobic.004G212300 determined the crystal structures of SbHCT in its apo-form and ternary complex with shikimate and p-coumaroyl-CoA(PubMedID : 23624856)@"shikimate hydroxycinnamoyl transferase, the MYB transcription factor binding domain AACG element"(PubMedID : 24045932)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transferase family protein, putative, expressed K13065: E2.3.1.133, shikimate O-hydroxycinnamoyltransferase
17 Sobic.003G030800 prenylated rab acceptor, putative, expressed -
18 Sobic.009G236100 3-ketoacyl-CoA synthase, putative, expressed K15397: 3-ketoacyl-CoA synthase
19 Sobic.009G026200 IQ calmodulin-binding motif domain containing protein, expressed -
20 Sobic.010G238800 glycosyltransferase family 43 protein, putative, expressed -


Gene co-expression network
sample Sobic006G176700 Sobic006G176700 Sobic004G288700 Sobic004G288700 Sobic006G176700--Sobic004G288700 Sobic004G222000 Sobic004G222000 Sobic006G176700--Sobic004G222000 Sobic002G124700 Sobic002G124700 Sobic006G176700--Sobic002G124700 Sobic003G305601 Sobic003G305601 Sobic006G176700--Sobic003G305601 Sobic001G505100 Sobic001G505100 Sobic006G176700--Sobic001G505100 Sobic009G215000 Sobic009G215000 Sobic006G176700--Sobic009G215000 Sobic001G084100 Sobic001G084100 Sobic006G176700--Sobic001G084100 Sobic002G270000 Sobic002G270000 Sobic006G176700--Sobic002G270000 Sobic004G334800 Sobic004G334800 Sobic006G176700--Sobic004G334800 Sobic004G288700--Sobic006G176700 Sobic003G373100 Sobic003G373100 Sobic004G288700--Sobic003G373100 Sobic004G288700--Sobic004G222000 Sobic004G288700--Sobic002G270000 Sobic004G288700--Sobic002G124700 Sobic004G288700--Sobic001G084100 Sobic009G002400 Sobic009G002400 Sobic004G288700--Sobic009G002400 Sobic001G294400 Sobic001G294400 Sobic004G288700--Sobic001G294400 Sobic009G073300 Sobic009G073300 Sobic004G288700--Sobic009G073300 Sobic004G295100 Sobic004G295100 Sobic004G222000--Sobic004G295100 Sobic002G329200 Sobic002G329200 Sobic004G222000--Sobic002G329200 Sobic006G170600 Sobic006G170600 Sobic004G222000--Sobic006G170600 Sobic004G180700 Sobic004G180700 Sobic004G222000--Sobic004G180700 Sobic001G300500 Sobic001G300500 Sobic004G222000--Sobic001G300500 Sobic002G085900 Sobic002G085900 Sobic004G222000--Sobic002G085900 Sobic006G235200 Sobic006G235200 Sobic004G222000--Sobic006G235200 Sobic006G202600 Sobic006G202600 Sobic004G222000--Sobic006G202600 Sobic006G050800 Sobic006G050800 Sobic004G222000--Sobic006G050800 Sobic004G257300 Sobic004G257300 Sobic002G124700--Sobic004G257300 Sobic002G124700--Sobic006G176700 Sobic002G124700--Sobic003G305601 Sobic002G124700--Sobic002G270000 Sobic001G217000 Sobic001G217000 Sobic002G124700--Sobic001G217000 Sobic002G124700--Sobic004G288700 Sobic009G195900 Sobic009G195900 Sobic002G124700--Sobic009G195900 Sobic002G124700--Sobic001G084100 Sobic003G108200 Sobic003G108200 Sobic002G124700--Sobic003G108200 Sobic006G156000 Sobic006G156000 Sobic003G305601--Sobic006G156000 Sobic004G212300 Sobic004G212300 Sobic003G305601--Sobic004G212300 Sobic003G305601--Sobic001G084100 Sobic005G168100 Sobic005G168100 Sobic003G305601--Sobic005G168100 Sobic002G343500 Sobic002G343500 Sobic003G305601--Sobic002G343500 Sobic002G210300 Sobic002G210300 Sobic003G305601--Sobic002G210300 Sobic003G305601--Sobic004G334800 Sobic001G113700 Sobic001G113700 Sobic003G305601--Sobic001G113700 Sobic009G220200 Sobic009G220200 Sobic003G305601--Sobic009G220200 Sobic004G345500 Sobic004G345500 Sobic001G505100--Sobic004G345500 Sobic004G152400 Sobic004G152400 Sobic001G505100--Sobic004G152400 Sobic004G103800 Sobic004G103800 Sobic001G505100--Sobic004G103800 Sobic007G019000 Sobic007G019000 Sobic001G505100--Sobic007G019000 Sobic010G230700 Sobic010G230700 Sobic001G505100--Sobic010G230700 Sobic007G018300 Sobic007G018300 Sobic001G505100--Sobic007G018300 Sobic002G330000 Sobic002G330000 Sobic001G505100--Sobic002G330000 Sobic003G344600 Sobic003G344600 Sobic001G505100--Sobic003G344600 Sobic002G115000 Sobic002G115000 Sobic001G505100--Sobic002G115000 Sobic002G053900 Sobic002G053900 Sobic009G215000--Sobic002G053900 Sobic001G046800 Sobic001G046800 Sobic009G215000--Sobic001G046800 Sobic009G008800 Sobic009G008800 Sobic009G215000--Sobic009G008800 Sobic010G106700 Sobic010G106700 Sobic009G215000--Sobic010G106700 Sobic001G484000 Sobic001G484000 Sobic009G215000--Sobic001G484000 Sobic009G072800 Sobic009G072800 Sobic009G215000--Sobic009G072800 Sobic005G052500 Sobic005G052500 Sobic009G215000--Sobic005G052500 Sobic001G208600 Sobic001G208600 Sobic009G215000--Sobic001G208600 Sobic003G206700 Sobic003G206700 Sobic009G215000--Sobic003G206700 Sobic001G532200 Sobic001G532200 Sobic001G084100--Sobic001G532200 Sobic001G173300 Sobic001G173300 Sobic001G084100--Sobic001G173300 Sobic001G084100--Sobic006G156000 Sobic010G052200 Sobic010G052200 Sobic001G084100--Sobic010G052200 Sobic001G084100--Sobic005G168100 Sobic001G084100--Sobic004G212300 Sobic003G119500 Sobic003G119500 Sobic001G084100--Sobic003G119500 Sobic003G219800 Sobic003G219800 Sobic001G084100--Sobic003G219800 Sobic001G418100 Sobic001G418100 Sobic001G084100--Sobic001G418100 Sobic002G270000--Sobic001G084100 Sobic002G128800 Sobic002G128800 Sobic002G270000--Sobic002G128800 Sobic010G238800 Sobic010G238800 Sobic002G270000--Sobic010G238800 Sobic001G063500 Sobic001G063500 Sobic002G270000--Sobic001G063500 Sobic002G270000--Sobic009G215000 Sobic002G252000 Sobic002G252000 Sobic002G270000--Sobic002G252000 Sobic002G270000--Sobic006G156000 Sobic002G396400 Sobic002G396400 Sobic002G270000--Sobic002G396400 Sobic002G270000--Sobic010G052200 Sobic004G224800 Sobic004G224800 Sobic004G334800--Sobic004G224800 Sobic004G066800 Sobic004G066800 Sobic004G334800--Sobic004G066800 Sobic004G196300 Sobic004G196300 Sobic004G334800--Sobic004G196300 Sobic007G114200 Sobic007G114200 Sobic004G334800--Sobic007G114200 Sobic007G019100 Sobic007G019100 Sobic004G334800--Sobic007G019100 Sobic002G090700 Sobic002G090700 Sobic004G334800--Sobic002G090700 Sobic004G327300 Sobic004G327300 Sobic004G334800--Sobic004G327300 Sobic002G078400 Sobic002G078400 Sobic004G334800--Sobic002G078400 Sobic001G403700 Sobic001G403700 Sobic004G334800--Sobic001G403700
Octagon: transcription factors


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