Gene annotation
Transcriptome id Sobic.004G288700.1
Synonym PIP aquaporin, PIP1, SbPIP1;3/1;4 (2);plasma membrane intrinsic protein/aquaporin, Sb04g032430, PIP1;3/1;4 (2), PIP1D, 5
Functional annotation similar to Aquaporin PIP1-3/PIP1-4 (PubMedID : 29862293)
up-regulated by silicon application (PubMedID : 24879770)
Up-regulated by osmotic stress. (PubMedID : 24879770)
aquaporin protein, putative, expressed
UniProt C5Y1D9 , P93683
Pfam PF00230
Panther DB PTHR19139 PTHR19139:SF140
NCBI CDD KOG0223; Aquaporin (major intrinsic protein family)
KEGG Orthology K09872; aquaporin PIP
Gene Ontology GO:0016020; membrane GO:0006810transport GO:0005215transporter activity


Orthologs (automatic annotation)
TAIR AT4G00430 : plasma membrane intrinsic protein 1;4
RAP-DB (Rice) LOC_Os02g44630.1 : aquaporin protein, putative, expressed
MaizeGDB (Corn) Zm00025a021439 , Zm00025a032250 , Zm00025a010237 , Zm00025a013554
Brachypodium KQJ84016 , KQK00718
Barley HORVU5Hr1G029550.1 , HORVU5Hr1G029550.2 , HORVU5Hr1G029550.4 , HORVU5Hr1G029550.6 , HORVU5Hr1G029550.7 , HORVU6Hr1G092960.12 , HORVU6Hr1G092960.13 , HORVU6Hr1G092960.10 , HORVU5Hr1G027240.4 , HORVU5Hr1G027240.5 , HORVU5Hr1G027240.2 , HORVU5Hr1G055200.7 , HORVU5Hr1G055200.6 , HORVU5Hr1G055200.5 , HORVU5Hr1G055200.4 , HORVU5Hr1G055200.3 , HORVU5Hr1G055200.2 , HORVU5Hr1G055200.1 , HORVU5Hr1G055200.8 , HORVU6Hr1G092960.4 , HORVU6Hr1G092960.5 , HORVU6Hr1G092960.6 , HORVU6Hr1G092960.7 , HORVU2Hr1G038740.16 , HORVU6Hr1G092960.1 , HORVU2Hr1G096360.15 , HORVU2Hr1G096360.16 , HORVU2Hr1G096360.10 , HORVU2Hr1G096360.11 , HORVU2Hr1G096360.12 , HORVU2Hr1G096360.13 , HORVU6Hr1G092970.3 , HORVU6Hr1G092970.2 , HORVU6Hr1G092970.4 , HORVU2Hr1G096360.6 , HORVU2Hr1G096360.7 , HORVU2Hr1G096360.4 , HORVU2Hr1G096360.5 , HORVU2Hr1G096360.2 , HORVU2Hr1G096360.3 , HORVU2Hr1G096360.1 , HORVU2Hr1G096360.8 , HORVU2Hr1G096360.9 , HORVU5Hr1G125600.1 , HORVU6Hr1G064140.7 , HORVU2Hr1G038740.1 , HORVU6Hr1G064140.5 , HORVU6Hr1G064140.4 , HORVU6Hr1G064140.3 , HORVU2Hr1G038740.5 , HORVU6Hr1G064140.1 , HORVU2Hr1G038740.7 , HORVU6Hr1G014300.1 , HORVU2Hr1G038740.10 , HORVU2Hr1G038740.11 , HORVU6Hr1G064140.6 , HORVU2Hr1G038740.2 , HORVU2Hr1G038740.14 , HORVU2Hr1G038740.15 , HORVU6Hr1G064140.2 , HORVU2Hr1G038740.6 , HORVU2Hr1G038740.18 , HORVU6Hr1G092960.9
Wheat TraesCS5D02G185400 , TraesCS2B02G605900 , TraesCS2D02G206300 , TraesCS6B02G279200 , TraesCS6D02G389400 , TraesCS6D02G227500 , TraesCS2A02G198500 , TraesCS5B02G178700 , TraesCS6A02G405700 , TraesCS6B02G450000 , TraesCS2D02G404800 , TraesCS2B02G425600 , TraesCS5D02G112500 , TraesCS5A02G181000 , TraesCS5A02G100000 , TraesCS2D02G404800 , TraesCS6B02G450200 , TraesCS6A02G245100 , TraesCS2B02G225900 , TraesCS2A02G407700 , TraesCS2A02G407700 , TraesCS6A02G405600 , TraesCS6D02G389500
Populus PNT30758 , PNT30757


JBrowse

Open New Page


cDNA sequences
Sobic.004G288700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G176700 similar to Aquaporin PIP1-3/PIP1-4(PubMedID : 29862293)@up-regulated by silicon application(PubMedID : 24879770)@Up-regulated by osmotic stress.(PubMedID : 24879770)@aquaporin protein, putative, expressed K09872: aquaporin PIP
2 Sobic.003G373100 patellin protein, putative, expressed -
3 Sobic.004G222000 similar to Aquaporin PIP2-3(PubMedID : 29862293)@-(PubMedID : 24879770)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Up-regulated by osmotic stress.(PubMedID : 24879770)@aquaporin protein, putative, expressed K09872: aquaporin PIP
4 Sobic.002G270000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@BAG domain-containing protein, putative, expressed -
5 Sobic.002G124700 up-regulated by silicon application(PubMedID : 24879770)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Up-regulated by osmotic stress.(PubMedID : 24879770)@aquaporin protein, putative, expressed K09872: aquaporin PIP
6 Sobic.001G084100 UDP-glucose 6-dehydrogenase 5(PubMedID : 26186930)@UDP-glucose 6-dehydrogenase, putative, expressed K00012: UGDH, UDPglucose 6-dehydrogenase
7 Sobic.009G002400 polygalacturonase inhibitor precursor, putative, expressed -
8 Sobic.001G294400 CAMK_CAMK_like.41 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K14498: serine/threonine-protein kinase SRK2
9 Sobic.009G073300 harpin-induced protein 1 domain containing protein, expressed -
10 Sobic.006G081600 expressed protein -
11 Sobic.010G238800 glycosyltransferase family 43 protein, putative, expressed -
12 Sobic.001G217000 DUF584 domain containing protein, putative, expressed -
13 Sobic.001G532200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@OsRhmbd7 - Putative Rhomboid homologue, expressed -
14 Sobic.007G090463 - K08235: xyloglucan:xyloglucosyl transferase
15 Sobic.004G285600 ethylene-responsive protein related, putative, expressed -
16 Sobic.007G192300 peroxidase precursor, putative, expressed K00430: peroxidase
17 Sobic.003G339100 DUF623 domain containing protein, expressed -
18 Sobic.004G212300 determined the crystal structures of SbHCT in its apo-form and ternary complex with shikimate and p-coumaroyl-CoA(PubMedID : 23624856)@"shikimate hydroxycinnamoyl transferase, the MYB transcription factor binding domain AACG element"(PubMedID : 24045932)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transferase family protein, putative, expressed K13065: E2.3.1.133, shikimate O-hydroxycinnamoyltransferase
19 Sobic.001G113700 cytochrome b561, putative, expressed K08360: cytochrome b-561
20 Sobic.009G027900 TKL_IRAK_CR4L.4 - The CR4L subfamily has homology with Crinkly4, expressed -


Gene co-expression network
sample Sobic004G288700 Sobic004G288700 Sobic006G176700 Sobic006G176700 Sobic004G288700--Sobic006G176700 Sobic003G373100 Sobic003G373100 Sobic004G288700--Sobic003G373100 Sobic004G222000 Sobic004G222000 Sobic004G288700--Sobic004G222000 Sobic002G270000 Sobic002G270000 Sobic004G288700--Sobic002G270000 Sobic002G124700 Sobic002G124700 Sobic004G288700--Sobic002G124700 Sobic001G084100 Sobic001G084100 Sobic004G288700--Sobic001G084100 Sobic009G002400 Sobic009G002400 Sobic004G288700--Sobic009G002400 Sobic001G294400 Sobic001G294400 Sobic004G288700--Sobic001G294400 Sobic009G073300 Sobic009G073300 Sobic004G288700--Sobic009G073300 Sobic006G176700--Sobic004G288700 Sobic006G176700--Sobic004G222000 Sobic006G176700--Sobic002G124700 Sobic003G305601 Sobic003G305601 Sobic006G176700--Sobic003G305601 Sobic001G505100 Sobic001G505100 Sobic006G176700--Sobic001G505100 Sobic009G215000 Sobic009G215000 Sobic006G176700--Sobic009G215000 Sobic006G176700--Sobic001G084100 Sobic006G176700--Sobic002G270000 Sobic004G334800 Sobic004G334800 Sobic006G176700--Sobic004G334800 Sobic003G373100--Sobic009G073300 Sobic001G532200 Sobic001G532200 Sobic003G373100--Sobic001G532200 Sobic004G212300 Sobic004G212300 Sobic003G373100--Sobic004G212300 Sobic001G113700 Sobic001G113700 Sobic003G373100--Sobic001G113700 Sobic009G208800 Sobic009G208800 Sobic003G373100--Sobic009G208800 Sobic008G151300 Sobic008G151300 Sobic003G373100--Sobic008G151300 Sobic003G373100--Sobic004G288700 Sobic001G516600 Sobic001G516600 Sobic003G373100--Sobic001G516600 Sobic005G231700 Sobic005G231700 Sobic003G373100--Sobic005G231700 Sobic004G295100 Sobic004G295100 Sobic004G222000--Sobic004G295100 Sobic002G329200 Sobic002G329200 Sobic004G222000--Sobic002G329200 Sobic006G170600 Sobic006G170600 Sobic004G222000--Sobic006G170600 Sobic004G180700 Sobic004G180700 Sobic004G222000--Sobic004G180700 Sobic001G300500 Sobic001G300500 Sobic004G222000--Sobic001G300500 Sobic002G085900 Sobic002G085900 Sobic004G222000--Sobic002G085900 Sobic006G235200 Sobic006G235200 Sobic004G222000--Sobic006G235200 Sobic006G202600 Sobic006G202600 Sobic004G222000--Sobic006G202600 Sobic006G050800 Sobic006G050800 Sobic004G222000--Sobic006G050800 Sobic002G270000--Sobic001G084100 Sobic002G128800 Sobic002G128800 Sobic002G270000--Sobic002G128800 Sobic010G238800 Sobic010G238800 Sobic002G270000--Sobic010G238800 Sobic001G063500 Sobic001G063500 Sobic002G270000--Sobic001G063500 Sobic002G270000--Sobic009G215000 Sobic002G252000 Sobic002G252000 Sobic002G270000--Sobic002G252000 Sobic006G156000 Sobic006G156000 Sobic002G270000--Sobic006G156000 Sobic002G396400 Sobic002G396400 Sobic002G270000--Sobic002G396400 Sobic010G052200 Sobic010G052200 Sobic002G270000--Sobic010G052200 Sobic004G257300 Sobic004G257300 Sobic002G124700--Sobic004G257300 Sobic002G124700--Sobic006G176700 Sobic002G124700--Sobic003G305601 Sobic002G124700--Sobic002G270000 Sobic001G217000 Sobic001G217000 Sobic002G124700--Sobic001G217000 Sobic002G124700--Sobic004G288700 Sobic009G195900 Sobic009G195900 Sobic002G124700--Sobic009G195900 Sobic002G124700--Sobic001G084100 Sobic003G108200 Sobic003G108200 Sobic002G124700--Sobic003G108200 Sobic001G084100--Sobic001G532200 Sobic001G173300 Sobic001G173300 Sobic001G084100--Sobic001G173300 Sobic001G084100--Sobic006G156000 Sobic001G084100--Sobic010G052200 Sobic005G168100 Sobic005G168100 Sobic001G084100--Sobic005G168100 Sobic001G084100--Sobic004G212300 Sobic003G119500 Sobic003G119500 Sobic001G084100--Sobic003G119500 Sobic003G219800 Sobic003G219800 Sobic001G084100--Sobic003G219800 Sobic001G418100 Sobic001G418100 Sobic001G084100--Sobic001G418100 Sobic003G039600 Sobic003G039600 Sobic009G002400--Sobic003G039600 Sobic006G274933 Sobic006G274933 Sobic009G002400--Sobic006G274933 Sobic010G071400 Sobic010G071400 Sobic009G002400--Sobic010G071400 Sobic001G238800 Sobic001G238800 Sobic009G002400--Sobic001G238800 Sobic009G002400--Sobic003G119500 Sobic004G159733 Sobic004G159733 Sobic009G002400--Sobic004G159733 Sobic003G411200 Sobic003G411200 Sobic009G002400--Sobic003G411200 Sobic003G311800 Sobic003G311800 Sobic009G002400--Sobic003G311800 Sobic009G002400--Sobic001G532200 Sobic006G242100 Sobic006G242100 Sobic001G294400--Sobic006G242100 Sobic001G294400--Sobic004G212300 Sobic010G069900 Sobic010G069900 Sobic001G294400--Sobic010G069900 Sobic001G294400--Sobic001G084100 Sobic001G294400--Sobic010G071400 Sobic001G294400--Sobic010G052200 Sobic004G172100 Sobic004G172100 Sobic001G294400--Sobic004G172100 Sobic005G142300 Sobic005G142300 Sobic001G294400--Sobic005G142300 Sobic009G102600 Sobic009G102600 Sobic001G294400--Sobic009G102600 Sobic009G073300--Sobic001G532200 Sobic004G286600 Sobic004G286600 Sobic009G073300--Sobic004G286600 Sobic008G177800 Sobic008G177800 Sobic009G073300--Sobic008G177800 Sobic001G437000 Sobic001G437000 Sobic009G073300--Sobic001G437000 Sobic006G231100 Sobic006G231100 Sobic009G073300--Sobic006G231100 Sobic007G057100 Sobic007G057100 Sobic009G073300--Sobic007G057100 Sobic009G073300--Sobic001G516600 Sobic006G194100 Sobic006G194100 Sobic009G073300--Sobic006G194100 Sobic009G073300--Sobic001G173300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.