Gene annotation
Transcriptome id Sobic.006G202000.1
Synonym PTAC17, Sb06g027386
Functional annotation COBW domain containing protein, putative, expressed
UniProt A0A1Z5RER8
Pfam PF07683 PF02492
Panther DB PTHR13748 PTHR13748:SF40
NCBI CDD KOG2743; Cobalamin synthesis protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G80480 : plastid transcriptionally active 17
RAP-DB (Rice) LOC_Os04g51100.1 : COBW domain containing protein, putative, expressed
MaizeGDB (Corn) -
Brachypodium PNT61780 , KQK01191
Barley HORVU6Hr1G086970.6 , HORVU6Hr1G086970.7 , HORVU6Hr1G086970.4 , HORVU6Hr1G086970.5 , HORVU6Hr1G086970.2 , HORVU6Hr1G086970.1 , HORVU6Hr1G086970.8 , HORVU6Hr1G086970.9 , HORVU6Hr1G086970.10
Wheat TraesCS2D02G438900 , TraesCS6A02G367100 , TraesCS6B02G402400 , TraesCS2A02G439900 , TraesCS2A02G439900 , TraesCS2B02G461500 , TraesCS6D02G350100
Populus PNT54300 , PNT54298 , PNT54299


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G168000 expressed protein -
2 Sobic.009G060600 - -
3 Sobic.004G240000 phosphoenolpyruvate carboxylase kinase, putative, expressed -
4 Sobic.001G027500 haloacid dehalogenase-like hydrolase family protein, putative, expressed -
5 Sobic.003G140800 expressed protein -
6 Sobic.007G187700 retinoblastoma-related protein-like, putative, expressed K04681: retinoblastoma-like protein 1
7 Sobic.006G226000 expressed protein -
8 Sobic.006G262501 - -
9 Sobic.001G458000 expressed protein -
10 Sobic.009G191500 pseudouridylate synthase, putative, expressed K06176: truD, tRNA pseudouridine13 synthase
11 Sobic.007G192200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@LTPL80 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
12 Sobic.008G175400 U-box domain-containing protein, putative, expressed -
13 Sobic.010G257000 two-component response regulator, putative, expressed -
14 Sobic.006G281900 down-regulated TF in developmental senescence(PubMedID : 27586543)@no apical meristem protein, putative, expressed -
15 Sobic.005G036200 protein of unknown function containing protein, expressed -
16 Sobic.004G192500 protein kinase PKN/PRK1, effector, putative, expressed -
17 Sobic.001G242500 - -
18 Sobic.007G082500 MBTB20 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
19 Sobic.007G050800 abhydrolase domain-containing protein FAM108C1, putative, expressed -
20 Sobic.006G135800 peroxidase precursor, putative, expressed K00430: peroxidase


Gene co-expression network
sample Sobic006G202000 Sobic006G202000 Sobic002G168000 Sobic002G168000 Sobic006G202000--Sobic002G168000 Sobic009G060600 Sobic009G060600 Sobic006G202000--Sobic009G060600 Sobic004G240000 Sobic004G240000 Sobic006G202000--Sobic004G240000 Sobic001G027500 Sobic001G027500 Sobic006G202000--Sobic001G027500 Sobic003G140800 Sobic003G140800 Sobic006G202000--Sobic003G140800 Sobic007G187700 Sobic007G187700 Sobic006G202000--Sobic007G187700 Sobic006G226000 Sobic006G226000 Sobic006G202000--Sobic006G226000 Sobic006G262501 Sobic006G262501 Sobic006G202000--Sobic006G262501 Sobic001G458000 Sobic001G458000 Sobic006G202000--Sobic001G458000 Sobic002G168000--Sobic007G187700 Sobic005G153000 Sobic005G153000 Sobic002G168000--Sobic005G153000 Sobic002G021200 Sobic002G021200 Sobic002G168000--Sobic002G021200 Sobic006G281900 Sobic006G281900 Sobic002G168000--Sobic006G281900 Sobic006G275500 Sobic006G275500 Sobic002G168000--Sobic006G275500 Sobic009G188900 Sobic009G188900 Sobic002G168000--Sobic009G188900 Sobic009G077300 Sobic009G077300 Sobic002G168000--Sobic009G077300 Sobic006G016700 Sobic006G016700 Sobic002G168000--Sobic006G016700 Sobic001G104500 Sobic001G104500 Sobic002G168000--Sobic001G104500 Sobic010G074940 Sobic010G074940 Sobic009G060600--Sobic010G074940 Sobic002G177600 Sobic002G177600 Sobic009G060600--Sobic002G177600 Sobic002G240000 Sobic002G240000 Sobic009G060600--Sobic002G240000 Sobic005G021000 Sobic005G021000 Sobic009G060600--Sobic005G021000 Sobic004G347500 Sobic004G347500 Sobic009G060600--Sobic004G347500 Sobic004G301800 Sobic004G301800 Sobic009G060600--Sobic004G301800 Sobic002G393100 Sobic002G393100 Sobic009G060600--Sobic002G393100 Sobic001G380800 Sobic001G380800 Sobic009G060600--Sobic001G380800 Sobic006G208000 Sobic006G208000 Sobic009G060600--Sobic006G208000 Sobic004G240000--Sobic002G168000 Sobic004G215900 Sobic004G215900 Sobic004G240000--Sobic004G215900 Sobic004G240000--Sobic006G202000 Sobic009G191500 Sobic009G191500 Sobic004G240000--Sobic009G191500 Sobic008G063600 Sobic008G063600 Sobic004G240000--Sobic008G063600 Sobic004G240000--Sobic001G027500 Sobic008G111600 Sobic008G111600 Sobic004G240000--Sobic008G111600 Sobic004G240000--Sobic006G262501 Sobic006G236000 Sobic006G236000 Sobic004G240000--Sobic006G236000 Sobic010G257000 Sobic010G257000 Sobic001G027500--Sobic010G257000 Sobic001G027500--Sobic002G168000 Sobic001G027500--Sobic008G063600 Sobic004G222200 Sobic004G222200 Sobic001G027500--Sobic004G222200 Sobic001G027500--Sobic006G226000 Sobic001G027500--Sobic006G262501 Sobic002G055800 Sobic002G055800 Sobic001G027500--Sobic002G055800 Sobic001G027500--Sobic007G187700 Sobic001G027500--Sobic005G153000 Sobic003G140800--Sobic010G074940 Sobic001G544400 Sobic001G544400 Sobic003G140800--Sobic001G544400 Sobic003G140800--Sobic002G393100 Sobic001G136400 Sobic001G136400 Sobic003G140800--Sobic001G136400 Sobic003G140800--Sobic001G380800 Sobic004G164800 Sobic004G164800 Sobic003G140800--Sobic004G164800 Sobic005G147600 Sobic005G147600 Sobic003G140800--Sobic005G147600 Sobic003G140800--Sobic004G301800 Sobic001G208500 Sobic001G208500 Sobic003G140800--Sobic001G208500 Sobic007G187700--Sobic002G168000 Sobic007G187700--Sobic002G021200 Sobic007G187700--Sobic005G153000 Sobic007G187700--Sobic001G104500 Sobic001G377700 Sobic001G377700 Sobic007G187700--Sobic001G377700 Sobic007G187700--Sobic006G275500 Sobic004G317000 Sobic004G317000 Sobic007G187700--Sobic004G317000 Sobic004G282601 Sobic004G282601 Sobic007G187700--Sobic004G282601 Sobic007G187700--Sobic009G077300 Sobic009G031800 Sobic009G031800 Sobic006G226000--Sobic009G031800 Sobic007G160400 Sobic007G160400 Sobic006G226000--Sobic007G160400 Sobic010G037901 Sobic010G037901 Sobic006G226000--Sobic010G037901 Sobic006G226000--Sobic002G055800 Sobic002G256900 Sobic002G256900 Sobic006G226000--Sobic002G256900 Sobic004G123200 Sobic004G123200 Sobic006G226000--Sobic004G123200 Sobic003G086800 Sobic003G086800 Sobic006G226000--Sobic003G086800 Sobic006G226000--Sobic002G240000 Sobic006G226000--Sobic001G136400 Sobic005G045700 Sobic005G045700 Sobic006G262501--Sobic005G045700 Sobic002G127900 Sobic002G127900 Sobic006G262501--Sobic002G127900 Sobic005G036200 Sobic005G036200 Sobic006G262501--Sobic005G036200 Sobic008G118100 Sobic008G118100 Sobic006G262501--Sobic008G118100 Sobic003G368901 Sobic003G368901 Sobic006G262501--Sobic003G368901 Sobic009G012600 Sobic009G012600 Sobic006G262501--Sobic009G012600 Sobic007G050800 Sobic007G050800 Sobic006G262501--Sobic007G050800 Sobic005G139300 Sobic005G139300 Sobic006G262501--Sobic005G139300 Sobic010G175000 Sobic010G175000 Sobic006G262501--Sobic010G175000 Sobic001G458000--Sobic006G202000 Sobic010G233000 Sobic010G233000 Sobic001G458000--Sobic010G233000 Sobic001G458000--Sobic005G036200 Sobic003G122800 Sobic003G122800 Sobic001G458000--Sobic003G122800 Sobic007G192200 Sobic007G192200 Sobic001G458000--Sobic007G192200 Sobic001G458000--Sobic006G262501 Sobic009G177200 Sobic009G177200 Sobic001G458000--Sobic009G177200 Sobic001G039300 Sobic001G039300 Sobic001G458000--Sobic001G039300 Sobic001G005800 Sobic001G005800 Sobic001G458000--Sobic001G005800
Octagon: transcription factors


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