Gene annotation
Transcriptome id Sobic.006G213300.1,Sobic.006G213300.2
Synonym MBD13, Sb06g028360
Functional annotation methyl-CpG binding domain containing protein, putative, expressed
UniProt C5YFQ6 , A0A1Z5RFV6
Pfam PF01429
Panther DB PTHR34067 PTHR34067:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005634; nucleus GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT5G52230 : methyl-CPG-binding domain protein 13
RAP-DB (Rice) LOC_Os04g52380.2,LOC_Os04g52380.1 : methyl-CpG binding domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a057014
Brachypodium -
Barley -
Wheat TraesCS2D02G421100
Populus -


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cDNA sequences
Sobic.006G213300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G027300 MYB family transcription factor, putative, expressed K04650: NCOR1, nuclear receptor co-repressor 1
2 Sobic.002G179900 ABC transporter, ATP-binding protein, putative, expressed -
3 Sobic.005G225400 expressed protein -
4 Sobic.005G163100 dnaJ domain containing protein, expressed -
5 Sobic.010G201500 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
6 Sobic.001G363500 DIRP family protein, putative, expressed -
7 Sobic.003G229500 ZOS12-01 - C2H2 zinc finger protein, expressed -
8 Sobic.006G211500 "GA biosynthetic gene, causes dwarfism accompanied by unusual culm bending in the mutants"(PubMedID : 24924234)@ent-kaurene synthase, chloroplast precursor, putative, expressed K04121: ent-kaurene synthase
9 Sobic.007G207000 Highest expression level in primordial inflorescence(PubMedID : 27501690)@OsSPL15 - SBP-box gene family member, expressed -
10 Sobic.001G474600 calmodulin-binding transcription activator, putative, expressed -
11 Sobic.009G166100 PWWP domain containing protein, expressed -
12 Sobic.004G331100 WD domain and HEAT domain containing protein, putative, expressed K08333: PIK3R4, phosphoinositide-3-kinase, regulatory subunit 4
13 Sobic.008G132600 expressed protein -
14 Sobic.001G050200 expressed protein -
15 Sobic.001G290100 expressed protein -
16 Sobic.001G196500 plus-3 domain containing protein, putative, expressed -
17 Sobic.009G229800 Uncharacterized gene family(PubMedID : 29126242)@"Causal gene for dw1, a putative membrane protein of unknown function"(PubMedID : 26963094)@expressed protein -
18 Sobic.004G271000 expressed protein -
19 Sobic.008G098300 ubiquitin carboxyl-terminal hydrolase 26, putative, expressed K11858: ubiquitin carboxyl-terminal hydrolase 48
20 Sobic.004G208900 RNA-binding protein Luc7-like, putative, expressed -


Gene co-expression network
sample Sobic006G213300 Sobic006G213300 Sobic009G027300 Sobic009G027300 Sobic006G213300--Sobic009G027300 Sobic002G179900 Sobic002G179900 Sobic006G213300--Sobic002G179900 Sobic005G225400 Sobic005G225400 Sobic006G213300--Sobic005G225400 Sobic005G163100 Sobic005G163100 Sobic006G213300--Sobic005G163100 Sobic010G201500 Sobic010G201500 Sobic006G213300--Sobic010G201500 Sobic001G363500 Sobic001G363500 Sobic006G213300--Sobic001G363500 Sobic003G229500 Sobic003G229500 Sobic006G213300--Sobic003G229500 Sobic006G211500 Sobic006G211500 Sobic006G213300--Sobic006G211500 Sobic007G207000 Sobic007G207000 Sobic006G213300--Sobic007G207000 Sobic008G132600 Sobic008G132600 Sobic009G027300--Sobic008G132600 Sobic002G045600 Sobic002G045600 Sobic009G027300--Sobic002G045600 Sobic004G331100 Sobic004G331100 Sobic009G027300--Sobic004G331100 Sobic003G422500 Sobic003G422500 Sobic009G027300--Sobic003G422500 Sobic002G008900 Sobic002G008900 Sobic009G027300--Sobic002G008900 Sobic003G101400 Sobic003G101400 Sobic009G027300--Sobic003G101400 Sobic001G050200 Sobic001G050200 Sobic009G027300--Sobic001G050200 Sobic009G191000 Sobic009G191000 Sobic009G027300--Sobic009G191000 Sobic007G075400 Sobic007G075400 Sobic009G027300--Sobic007G075400 Sobic009G010600 Sobic009G010600 Sobic002G179900--Sobic009G010600 SobicK042000 SobicK042000 Sobic002G179900--SobicK042000 Sobic007G024700 Sobic007G024700 Sobic002G179900--Sobic007G024700 Sobic009G249200 Sobic009G249200 Sobic002G179900--Sobic009G249200 Sobic004G052900 Sobic004G052900 Sobic002G179900--Sobic004G052900 Sobic004G113400 Sobic004G113400 Sobic002G179900--Sobic004G113400 Sobic006G245400 Sobic006G245400 Sobic002G179900--Sobic006G245400 Sobic007G172400 Sobic007G172400 Sobic002G179900--Sobic007G172400 Sobic002G315200 Sobic002G315200 Sobic002G179900--Sobic002G315200 Sobic005G225400--Sobic006G211500 Sobic004G330900 Sobic004G330900 Sobic005G225400--Sobic004G330900 Sobic009G229800 Sobic009G229800 Sobic005G225400--Sobic009G229800 Sobic005G225400--Sobic005G163100 Sobic007G041500 Sobic007G041500 Sobic005G225400--Sobic007G041500 Sobic004G282400 Sobic004G282400 Sobic005G225400--Sobic004G282400 Sobic007G202600 Sobic007G202600 Sobic005G225400--Sobic007G202600 Sobic002G058400 Sobic002G058400 Sobic005G225400--Sobic002G058400 Sobic006G058600 Sobic006G058600 Sobic005G225400--Sobic006G058600 Sobic006G210000 Sobic006G210000 Sobic005G163100--Sobic006G210000 Sobic001G134300 Sobic001G134300 Sobic005G163100--Sobic001G134300 Sobic010G001100 Sobic010G001100 Sobic005G163100--Sobic010G001100 Sobic003G133900 Sobic003G133900 Sobic005G163100--Sobic003G133900 Sobic004G155600 Sobic004G155600 Sobic005G163100--Sobic004G155600 Sobic004G246100 Sobic004G246100 Sobic005G163100--Sobic004G246100 Sobic001G090800 Sobic001G090800 Sobic005G163100--Sobic001G090800 Sobic004G355800 Sobic004G355800 Sobic005G163100--Sobic004G355800 Sobic001G014300 Sobic001G014300 Sobic005G163100--Sobic001G014300 Sobic002G071500 Sobic002G071500 Sobic010G201500--Sobic002G071500 Sobic007G065400 Sobic007G065400 Sobic010G201500--Sobic007G065400 Sobic004G271000 Sobic004G271000 Sobic010G201500--Sobic004G271000 Sobic003G372700 Sobic003G372700 Sobic010G201500--Sobic003G372700 Sobic002G006900 Sobic002G006900 Sobic010G201500--Sobic002G006900 Sobic002G191800 Sobic002G191800 Sobic010G201500--Sobic002G191800 Sobic010G065300 Sobic010G065300 Sobic010G201500--Sobic010G065300 Sobic010G069100 Sobic010G069100 Sobic010G201500--Sobic010G069100 Sobic001G155000 Sobic001G155000 Sobic010G201500--Sobic001G155000 Sobic005G112300 Sobic005G112300 Sobic001G363500--Sobic005G112300 Sobic007G062800 Sobic007G062800 Sobic001G363500--Sobic007G062800 Sobic010G247800 Sobic010G247800 Sobic001G363500--Sobic010G247800 Sobic002G299700 Sobic002G299700 Sobic001G363500--Sobic002G299700 Sobic010G112100 Sobic010G112100 Sobic001G363500--Sobic010G112100 Sobic004G242400 Sobic004G242400 Sobic001G363500--Sobic004G242400 Sobic001G433800 Sobic001G433800 Sobic001G363500--Sobic001G433800 Sobic010G279450 Sobic010G279450 Sobic001G363500--Sobic010G279450 Sobic010G139000 Sobic010G139000 Sobic001G363500--Sobic010G139000 Sobic003G229500--Sobic008G132600 Sobic003G229500--Sobic007G062800 Sobic003G229500--Sobic003G101400 Sobic001G196500 Sobic001G196500 Sobic003G229500--Sobic001G196500 Sobic002G042600 Sobic002G042600 Sobic003G229500--Sobic002G042600 Sobic003G229500--Sobic001G363500 Sobic001G347500 Sobic001G347500 Sobic003G229500--Sobic001G347500 Sobic003G072200 Sobic003G072200 Sobic003G229500--Sobic003G072200 Sobic001G540400 Sobic001G540400 Sobic003G229500--Sobic001G540400 Sobic010G189000 Sobic010G189000 Sobic006G211500--Sobic010G189000 Sobic007G208600 Sobic007G208600 Sobic006G211500--Sobic007G208600 Sobic006G046700 Sobic006G046700 Sobic006G211500--Sobic006G046700 Sobic001G252700 Sobic001G252700 Sobic006G211500--Sobic001G252700 Sobic006G211500--Sobic005G225400 Sobic002G288000 Sobic002G288000 Sobic006G211500--Sobic002G288000 Sobic006G211500--Sobic004G246100 Sobic008G153000 Sobic008G153000 Sobic006G211500--Sobic008G153000 Sobic007G095200 Sobic007G095200 Sobic006G211500--Sobic007G095200 Sobic001G125200 Sobic001G125200 Sobic007G207000--Sobic001G125200 Sobic001G474600 Sobic001G474600 Sobic007G207000--Sobic001G474600 Sobic007G207000--Sobic003G101400 Sobic007G207000--Sobic009G191000 Sobic007G207000--Sobic001G196500 Sobic007G207000--Sobic001G540400 Sobic004G351100 Sobic004G351100 Sobic007G207000--Sobic004G351100 Sobic002G309600 Sobic002G309600 Sobic007G207000--Sobic002G309600 Sobic007G207000--Sobic001G050200
Octagon: transcription factors


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