Gene annotation
Transcriptome id Sobic.006G215300.1
Synonym
Functional annotation tetratricopeptide repeat domain containing protein, expressed
UniProt A0A1B6PN60
Pfam PF13414
Panther DB PTHR22904 PTHR22904:SF10
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G56090 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os04g52580.1 : tetratricopeptide repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a009790
Brachypodium PNT61851
Barley HORVU2Hr1G098550.9 , HORVU2Hr1G098550.8 , HORVU2Hr1G098550.7 , HORVU2Hr1G098550.6 , HORVU2Hr1G098550.5 , HORVU2Hr1G098550.4 , HORVU2Hr1G098550.3 , HORVU2Hr1G098550.2
Wheat TraesCS2A02G419100 , TraesCS2B02G437800 , TraesCS2D02G416000
Populus -


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cDNA sequences
Sobic.006G215300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G057400 copper-transporting ATPase, putative, expressed K17686: copA, ctpA, P-type Cu+ transporter
2 Sobic.004G205600 bromodomain domain containing protein, expressed -
3 Sobic.006G273200 "PKc_like super family, protein kjinases, catalytic domain"(PubMedID : 29491869)@protein kinase family protein, putative, expressed K14500: BR-signaling kinase
4 Sobic.001G281600 cyclin-dependent kinase E-1, putative, expressed K02208: cyclin-dependent kinase 8/11
5 Sobic.009G117300 protein kinase APK1B, chloroplast precursor, putative, expressed -
6 Sobic.001G497300 protein kinase domain containing protein, expressed -
7 Sobic.003G401000 adaptin, putative, expressed K12400: AP-4 complex subunit epsilon-1
8 Sobic.009G117400 protein kinase domain containing protein, expressed -
9 Sobic.009G065100 splicing factor, putative, expressed K12850: pre-mRNA-splicing factor 38B
10 Sobic.010G268300 protein phosphatase 2C, putative, expressed -
11 Sobic.010G056200 WD-40 repeat family protein, putative, expressed -
12 Sobic.007G200600 ZOS8-11 - C2H2 zinc finger protein, expressed -
13 Sobic.002G158700 TATA binding protein-associated factor, putative, expressed K03131: transcription initiation factor TFIID subunit 6
14 Sobic.002G090800 expressed protein -
15 Sobic.007G205800 chaperone protein dnaJ 10, putative, expressed -
16 Sobic.003G401100 WW domain containing protein, expressed K12865: PQBP1, polyglutamine-binding protein 1
17 Sobic.001G365600 OsPOP8 - Putative Prolyl Oligopeptidase homologue, expressed -
18 Sobic.004G084300 MYB family transcription factor, putative, expressed K11324: DMAP1, SWC4, DNA methyltransferase 1-associated protein 1
19 Sobic.003G394300 tetratricopeptide repeat domain containing protein, expressed -
20 Sobic.001G372000 OsFBT5 - F-box and tubby domain containing protein, expressed -


Gene co-expression network
sample Sobic006G215300 Sobic006G215300 Sobic004G057400 Sobic004G057400 Sobic006G215300--Sobic004G057400 Sobic004G205600 Sobic004G205600 Sobic006G215300--Sobic004G205600 Sobic006G273200 Sobic006G273200 Sobic006G215300--Sobic006G273200 Sobic001G281600 Sobic001G281600 Sobic006G215300--Sobic001G281600 Sobic009G117300 Sobic009G117300 Sobic006G215300--Sobic009G117300 Sobic001G497300 Sobic001G497300 Sobic006G215300--Sobic001G497300 Sobic003G401000 Sobic003G401000 Sobic006G215300--Sobic003G401000 Sobic009G117400 Sobic009G117400 Sobic006G215300--Sobic009G117400 Sobic009G065100 Sobic009G065100 Sobic006G215300--Sobic009G065100 Sobic001G090400 Sobic001G090400 Sobic004G057400--Sobic001G090400 Sobic004G057400--Sobic004G205600 Sobic002G157300 Sobic002G157300 Sobic004G057400--Sobic002G157300 Sobic009G000500 Sobic009G000500 Sobic004G057400--Sobic009G000500 Sobic008G067600 Sobic008G067600 Sobic004G057400--Sobic008G067600 Sobic006G128900 Sobic006G128900 Sobic004G057400--Sobic006G128900 Sobic007G011400 Sobic007G011400 Sobic004G057400--Sobic007G011400 Sobic004G031700 Sobic004G031700 Sobic004G057400--Sobic004G031700 Sobic007G205800 Sobic007G205800 Sobic004G057400--Sobic007G205800 Sobic004G205600--Sobic004G057400 Sobic004G205600--Sobic001G497300 Sobic004G205600--Sobic001G090400 Sobic003G081000 Sobic003G081000 Sobic004G205600--Sobic003G081000 Sobic007G026300 Sobic007G026300 Sobic004G205600--Sobic007G026300 Sobic004G205600--Sobic009G000500 Sobic004G205600--Sobic002G157300 Sobic004G205600--Sobic009G065100 Sobic002G157000 Sobic002G157000 Sobic004G205600--Sobic002G157000 Sobic006G273200--Sobic001G497300 Sobic006G273200--Sobic009G065100 Sobic006G273200--Sobic004G205600 Sobic007G096000 Sobic007G096000 Sobic006G273200--Sobic007G096000 Sobic009G233300 Sobic009G233300 Sobic006G273200--Sobic009G233300 Sobic008G062000 Sobic008G062000 Sobic006G273200--Sobic008G062000 Sobic006G237400 Sobic006G237400 Sobic006G273200--Sobic006G237400 Sobic006G273200--Sobic007G205800 Sobic003G176600 Sobic003G176600 Sobic006G273200--Sobic003G176600 Sobic010G279700 Sobic010G279700 Sobic001G281600--Sobic010G279700 Sobic007G078500 Sobic007G078500 Sobic001G281600--Sobic007G078500 Sobic006G200600 Sobic006G200600 Sobic001G281600--Sobic006G200600 Sobic003G401100 Sobic003G401100 Sobic001G281600--Sobic003G401100 Sobic004G121100 Sobic004G121100 Sobic001G281600--Sobic004G121100 Sobic009G215800 Sobic009G215800 Sobic001G281600--Sobic009G215800 Sobic004G084300 Sobic004G084300 Sobic001G281600--Sobic004G084300 Sobic009G050900 Sobic009G050900 Sobic001G281600--Sobic009G050900 Sobic008G179700 Sobic008G179700 Sobic001G281600--Sobic008G179700 Sobic009G117300--Sobic009G117400 Sobic004G271900 Sobic004G271900 Sobic009G117300--Sobic004G271900 Sobic009G225200 Sobic009G225200 Sobic009G117300--Sobic009G225200 Sobic010G263800 Sobic010G263800 Sobic009G117300--Sobic010G263800 Sobic009G117300--Sobic004G057400 Sobic008G034600 Sobic008G034600 Sobic009G117300--Sobic008G034600 Sobic006G209500 Sobic006G209500 Sobic009G117300--Sobic006G209500 Sobic004G256600 Sobic004G256600 Sobic009G117300--Sobic004G256600 Sobic009G117300--Sobic007G205800 Sobic007G104800 Sobic007G104800 Sobic001G497300--Sobic007G104800 Sobic001G512700 Sobic001G512700 Sobic001G497300--Sobic001G512700 Sobic002G006900 Sobic002G006900 Sobic001G497300--Sobic002G006900 Sobic001G497300--Sobic006G237400 Sobic001G497300--Sobic004G205600 Sobic001G413500 Sobic001G413500 Sobic001G497300--Sobic001G413500 Sobic008G047800 Sobic008G047800 Sobic001G497300--Sobic008G047800 Sobic005G023900 Sobic005G023900 Sobic001G497300--Sobic005G023900 Sobic001G497300--Sobic002G157000 Sobic002G158700 Sobic002G158700 Sobic003G401000--Sobic002G158700 Sobic003G187400 Sobic003G187400 Sobic003G401000--Sobic003G187400 Sobic003G401000--Sobic002G157300 Sobic009G257800 Sobic009G257800 Sobic003G401000--Sobic009G257800 Sobic001G155000 Sobic001G155000 Sobic003G401000--Sobic001G155000 Sobic009G040700 Sobic009G040700 Sobic003G401000--Sobic009G040700 Sobic001G094000 Sobic001G094000 Sobic003G401000--Sobic001G094000 Sobic006G028200 Sobic006G028200 Sobic003G401000--Sobic006G028200 Sobic003G008500 Sobic003G008500 Sobic003G401000--Sobic003G008500 Sobic009G117400--Sobic009G117300 Sobic009G117400--Sobic004G271900 Sobic009G117400--Sobic010G263800 Sobic009G117400--Sobic007G205800 Sobic009G117400--Sobic004G256600 Sobic009G117400--Sobic008G034600 Sobic001G347600 Sobic001G347600 Sobic009G117400--Sobic001G347600 Sobic009G117400--Sobic004G057400 Sobic009G117400--Sobic006G209500 Sobic002G320500 Sobic002G320500 Sobic009G065100--Sobic002G320500 Sobic009G065100--Sobic002G157000 Sobic008G173900 Sobic008G173900 Sobic009G065100--Sobic008G173900 Sobic009G065100--Sobic009G215800 Sobic009G065100--Sobic004G084300 Sobic002G144933 Sobic002G144933 Sobic009G065100--Sobic002G144933 Sobic002G309800 Sobic002G309800 Sobic009G065100--Sobic002G309800 Sobic001G107500 Sobic001G107500 Sobic009G065100--Sobic001G107500 Sobic003G197800 Sobic003G197800 Sobic009G065100--Sobic003G197800
Octagon: transcription factors


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