Gene annotation
Transcriptome id Sobic.006G226700.1
Synonym Sb06g029540, BAN
Functional annotation leucoanthocyanidin reductase, putative, expressed
UniProt A0A1B6PND3
Pfam PF01370
Panther DB PTHR10366 PTHR10366:SF288
NCBI CDD KOG1502; Flavonol reductase/cinnamoyl-CoA reductase
KEGG Orthology -
Gene Ontology GO:0003824; catalytic activity


Orthologs (automatic annotation)
TAIR AT1G61720 : NAD(P)-binding Rossmann-fold superfamily protein
RAP-DB (Rice) LOC_Os04g53920.1 : leucoanthocyanidin reductase, putative, expressed
MaizeGDB (Corn) Zm00025a057102
Brachypodium KQJ84785
Barley HORVU2Hr1G108260.3 , HORVU2Hr1G108260.2 , HORVU2Hr1G108260.7 , HORVU2Hr1G108260.6 , HORVU2Hr1G108260.5 , HORVU2Hr1G108260.4 , HORVU2Hr1G108260.9 , HORVU2Hr1G108260.8 , HORVU2Hr1G108180.2 , HORVU2Hr1G108180.3 , HORVU2Hr1G108180.1 , HORVU2Hr1G108180.4 , HORVU2Hr1G108180.5 , HORVU2Hr1G108260.11 , HORVU2Hr1G108260.10
Wheat TraesCS2B02G507700 , TraesCS2B02G507700 , TraesCS2A02G481400 , TraesCS2B02G507600 , TraesCS2A02G481300 , TraesCS2D02G481500 , TraesCS2D02G481700 , TraesCS2A02G481200
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.006G226700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G186100 protein kinase, putative, expressed K13436: pto-interacting protein 1
2 Sobic.003G343900 expressed protein -
3 Sobic.005G211400 cytochrome P450, putative, expressed -
4 Sobic.010G062100 expressed protein -
5 Sobic.004G062500 "4-coumaroyl-CoA synthetase, the MYB transcription factor binding domain AACG element"(PubMedID : 24045932)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Brown midrib2 (Bmr2) encodes the major 4-coumarate:coenzyme A ligase involved in lignin biosynthesis(PubMedID : 22313236)@4-Coumarate: Coenzyme A Ligase (4CL)(PubMedID : 22313236)@AMP-binding domain containing protein, expressed K01904: 4-coumarate--CoA ligase
6 Sobic.002G362900 IBS1, putative, expressed -
7 Sobic.009G033600 "OsSAMS1(Ortholog in rice:Chen et al., 2013)"(PubMedID : 31659917)@S-adenosylmethionine synthetase, putative, expressed K00789: S-adenosylmethionine synthetase
8 Sobic.001G090000 expressed protein -
9 Sobic.001G494000 Expressed in older stem(PubMedID : 28649278)@homeodomain protein, putative, expressed -
10 Sobic.009G220100 exostosin family domain containing protein, expressed -
11 Sobic.004G212300 determined the crystal structures of SbHCT in its apo-form and ternary complex with shikimate and p-coumaroyl-CoA(PubMedID : 23624856)@"shikimate hydroxycinnamoyl transferase, the MYB transcription factor binding domain AACG element"(PubMedID : 24045932)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transferase family protein, putative, expressed K13065: E2.3.1.133, shikimate O-hydroxycinnamoyltransferase
12 Sobic.010G252500 "domain confirmed by Pfam database, expression supported by NCBI EST database"(PubMedID : 20499123)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@OsSAUR28 - Auxin-responsive SAUR gene family member, expressed K14488: SAUR family protein
13 Sobic.004G145200 membrane attack complex component/perforin/complement C9, putative, expressed -
14 Sobic.009G179200 endoplasmic reticulum-Golgi intermediate compartment protein 3, putative, expressed -
15 Sobic.010G268400 eukaryotic aspartyl protease domain containing protein, expressed -
16 Sobic.010G262200 B-box (BBX) protein(PubMedID : 30626335)@B-box zinc finger family protein, putative, expressed -
17 Sobic.007G157900 gibberellin receptor GID1L2, putative, expressed -
18 Sobic.001G125800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@lipoxygenase, putative, expressed K15718: linoleate 9S-lipoxygenase
19 Sobic.010G195500 reductase, putative, expressed -
20 Sobic.002G329000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@TKL_IRAK_DUF26-ld.3 - DUF26 kinases have homology to DUF26 containing loci, expressed -


Gene co-expression network
sample Sobic006G226700 Sobic006G226700 Sobic007G186100 Sobic007G186100 Sobic006G226700--Sobic007G186100 Sobic003G343900 Sobic003G343900 Sobic006G226700--Sobic003G343900 Sobic005G211400 Sobic005G211400 Sobic006G226700--Sobic005G211400 Sobic010G062100 Sobic010G062100 Sobic006G226700--Sobic010G062100 Sobic004G062500 Sobic004G062500 Sobic006G226700--Sobic004G062500 Sobic002G362900 Sobic002G362900 Sobic006G226700--Sobic002G362900 Sobic009G033600 Sobic009G033600 Sobic006G226700--Sobic009G033600 Sobic001G090000 Sobic001G090000 Sobic006G226700--Sobic001G090000 Sobic001G494000 Sobic001G494000 Sobic006G226700--Sobic001G494000 Sobic007G186100--Sobic001G494000 Sobic007G186100--Sobic003G343900 Sobic003G119500 Sobic003G119500 Sobic007G186100--Sobic003G119500 Sobic007G186100--Sobic004G062500 Sobic007G186100--Sobic010G062100 Sobic004G212300 Sobic004G212300 Sobic007G186100--Sobic004G212300 Sobic003G219800 Sobic003G219800 Sobic007G186100--Sobic003G219800 Sobic009G181800 Sobic009G181800 Sobic007G186100--Sobic009G181800 Sobic003G316000 Sobic003G316000 Sobic007G186100--Sobic003G316000 Sobic003G343900--Sobic001G494000 Sobic001G009500 Sobic001G009500 Sobic003G343900--Sobic001G009500 Sobic010G252500 Sobic010G252500 Sobic003G343900--Sobic010G252500 Sobic001G389000 Sobic001G389000 Sobic003G343900--Sobic001G389000 Sobic008G106700 Sobic008G106700 Sobic003G343900--Sobic008G106700 Sobic009G179900 Sobic009G179900 Sobic003G343900--Sobic009G179900 Sobic005G093000 Sobic005G093000 Sobic003G343900--Sobic005G093000 Sobic003G429000 Sobic003G429000 Sobic003G343900--Sobic003G429000 Sobic003G417350 Sobic003G417350 Sobic003G343900--Sobic003G417350 Sobic009G241700 Sobic009G241700 Sobic005G211400--Sobic009G241700 Sobic007G098400 Sobic007G098400 Sobic005G211400--Sobic007G098400 Sobic002G242500 Sobic002G242500 Sobic005G211400--Sobic002G242500 Sobic003G294400 Sobic003G294400 Sobic005G211400--Sobic003G294400 Sobic004G232400 Sobic004G232400 Sobic005G211400--Sobic004G232400 Sobic004G145200 Sobic004G145200 Sobic005G211400--Sobic004G145200 Sobic006G076201 Sobic006G076201 Sobic005G211400--Sobic006G076201 Sobic005G211400--Sobic001G090000 Sobic001G403700 Sobic001G403700 Sobic005G211400--Sobic001G403700 Sobic010G062100--Sobic001G494000 Sobic010G062100--Sobic001G009500 Sobic003G371750 Sobic003G371750 Sobic010G062100--Sobic003G371750 Sobic010G062100--Sobic007G186100 Sobic010G062100--Sobic003G343900 Sobic007G176000 Sobic007G176000 Sobic010G062100--Sobic007G176000 Sobic010G062100--Sobic008G106700 Sobic007G176100 Sobic007G176100 Sobic010G062100--Sobic007G176100 Sobic004G262200 Sobic004G262200 Sobic010G062100--Sobic004G262200 Sobic004G062500--Sobic010G252500 Sobic010G195500 Sobic010G195500 Sobic004G062500--Sobic010G195500 Sobic004G062500--Sobic004G212300 Sobic007G218800 Sobic007G218800 Sobic004G062500--Sobic007G218800 Sobic010G085800 Sobic010G085800 Sobic004G062500--Sobic010G085800 Sobic004G062500--Sobic003G119500 Sobic010G268400 Sobic010G268400 Sobic004G062500--Sobic010G268400 Sobic004G062500--Sobic001G494000 Sobic004G062500--Sobic003G219800 Sobic007G188100 Sobic007G188100 Sobic002G362900--Sobic007G188100 Sobic006G087900 Sobic006G087900 Sobic002G362900--Sobic006G087900 Sobic009G220200 Sobic009G220200 Sobic002G362900--Sobic009G220200 Sobic009G208800 Sobic009G208800 Sobic002G362900--Sobic009G208800 Sobic002G362900--Sobic004G145200 Sobic005G231700 Sobic005G231700 Sobic002G362900--Sobic005G231700 Sobic008G016900 Sobic008G016900 Sobic002G362900--Sobic008G016900 Sobic010G228000 Sobic010G228000 Sobic002G362900--Sobic010G228000 Sobic001G409900 Sobic001G409900 Sobic002G362900--Sobic001G409900 Sobic008G132700 Sobic008G132700 Sobic009G033600--Sobic008G132700 Sobic001G282100 Sobic001G282100 Sobic009G033600--Sobic001G282100 Sobic009G033600--Sobic003G371750 Sobic003G215200 Sobic003G215200 Sobic009G033600--Sobic003G215200 Sobic003G305700 Sobic003G305700 Sobic009G033600--Sobic003G305700 Sobic009G033600--Sobic001G494000 Sobic004G066600 Sobic004G066600 Sobic009G033600--Sobic004G066600 Sobic007G008200 Sobic007G008200 Sobic009G033600--Sobic007G008200 Sobic004G051700 Sobic004G051700 Sobic009G033600--Sobic004G051700 Sobic010G144400 Sobic010G144400 Sobic001G090000--Sobic010G144400 Sobic009G016201 Sobic009G016201 Sobic001G090000--Sobic009G016201 Sobic008G132800 Sobic008G132800 Sobic001G090000--Sobic008G132800 Sobic002G068300 Sobic002G068300 Sobic001G090000--Sobic002G068300 Sobic004G172700 Sobic004G172700 Sobic001G090000--Sobic004G172700 Sobic010G029400 Sobic010G029400 Sobic001G090000--Sobic010G029400 Sobic006G150600 Sobic006G150600 Sobic001G090000--Sobic006G150600 Sobic001G090000--Sobic001G282100 Sobic010G008100 Sobic010G008100 Sobic001G090000--Sobic010G008100 Sobic001G494000--Sobic008G106700 Sobic001G494000--Sobic003G343900 Sobic001G494000--Sobic007G186100 Sobic004G046200 Sobic004G046200 Sobic001G494000--Sobic004G046200 Sobic001G494000--Sobic003G219800 Sobic001G494000--Sobic010G195500 Sobic003G079400 Sobic003G079400 Sobic001G494000--Sobic003G079400 Sobic001G494000--Sobic010G062100 Sobic002G003800 Sobic002G003800 Sobic001G494000--Sobic002G003800
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.