Gene annotation
Transcriptome id Sobic.006G255100.2
Synonym PIN1AT, Sb06g031895
Functional annotation peptidyl-prolyl cis-trans isomerase, putative, expressed
UniProt A0A1Z5RGG3
Pfam PF00639
Panther DB PTHR10657 PTHR10657:SF18
NCBI CDD -
KEGG Orthology K09578; peptidyl-prolyl cis-trans isomerase NIMA-interacting 1
Gene Ontology GO:0016853; isomerase activity


Orthologs (automatic annotation)
TAIR AT2G18040 : peptidylprolyl cis/trans isomerase, NIMA-interacting 1
RAP-DB (Rice) LOC_Os04g56800.1 : peptidyl-prolyl cis-trans isomerase, putative, expressed
MaizeGDB (Corn) Zm00025a009415
Brachypodium KQJ81598 , KQJ81597
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.006G255100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G046100 bZIP transcription factor domain containing protein, expressed -
2 Sobic.010G077600 gb protein, putative, expressed -
3 Sobic.003G034500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@myb-like DNA-binding domain containing protein, putative, expressed K09422: transcription factor MYB, plant
4 Sobic.009G065000 "domain confirmed by Pfam database, expression supported by NCBI EST database, expression induced by IAA and BR treatments"(PubMedID : 20499123)@OsIAA15 - Auxin-responsive Aux/IAA gene family member, expressed K14484: auxin-responsive protein IAA
5 Sobic.004G332000 alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase, putative, expressed K00736: alpha-1,6-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase
6 Sobic.003G248500 WD domain, G-beta repeat domain containing protein, expressed -
7 Sobic.001G206000 acyltransferase, putative, expressed K00655: 1-acyl-sn-glycerol-3-phosphate acyltransferase
8 Sobic.003G116700 hydrolase, alpha/beta fold family domain containing protein, expressed -
9 Sobic.001G065700 glycine-rich protein, putative, expressed K13344: peroxin-13
10 Sobic.003G317200 vacuolar protein sorting-associated protein 28 homolog 2, putative, expressed K12184: ESCRT-I complex subunit VPS28
11 Sobic.007G007900 mago nashi, putative, expressed K12877: protein mago nashi
12 Sobic.010G055500 RNA-binding motif protein, putative, expressed K12872: RBM22, pre-mRNA-splicing factor RBM22/SLT11
13 Sobic.003G273100 vesicle transport v-SNARE protein, putative, expressed K08493: vesicle transport through interaction with t-SNAREs 1
14 Sobic.008G126200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@calmodulin binding protein, putative, expressed -
15 Sobic.010G071200 "Belonging to the Sdw3 locus, Sbi_sdw3"(PubMedID : 20464438)@ubiquitin-conjugating enzyme, putative, expressed K04554: UBE2J2, NCUBE2, ubiquitin-conjugating enzyme E2 J2
16 Sobic.001G290200 leucine rich repeat containing protein, expressed -
17 Sobic.010G000700 zinc finger, C3HC4 type domain containing protein, expressed K11982: E3 ubiquitin-protein ligase RNF115/126
18 Sobic.001G149700 vesicle transport v-SNARE protein, putative, expressed K08496: GOSR2, golgi SNAP receptor complex member 2
19 Sobic.009G134600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@gibberellin receptor GID1L2, putative, expressed K14493: gibberellin receptor GID1
20 Sobic.006G218700 tyrosine protein kinase domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic006G255100 Sobic006G255100 Sobic005G046100 Sobic005G046100 Sobic006G255100--Sobic005G046100 Sobic010G077600 Sobic010G077600 Sobic006G255100--Sobic010G077600 Sobic003G034500 Sobic003G034500 Sobic006G255100--Sobic003G034500 Sobic009G065000 Sobic009G065000 Sobic006G255100--Sobic009G065000 Sobic004G332000 Sobic004G332000 Sobic006G255100--Sobic004G332000 Sobic003G248500 Sobic003G248500 Sobic006G255100--Sobic003G248500 Sobic001G206000 Sobic001G206000 Sobic006G255100--Sobic001G206000 Sobic003G116700 Sobic003G116700 Sobic006G255100--Sobic003G116700 Sobic001G065700 Sobic001G065700 Sobic006G255100--Sobic001G065700 Sobic005G167300 Sobic005G167300 Sobic005G046100--Sobic005G167300 Sobic004G150400 Sobic004G150400 Sobic005G046100--Sobic004G150400 Sobic001G420700 Sobic001G420700 Sobic005G046100--Sobic001G420700 Sobic006G109300 Sobic006G109300 Sobic005G046100--Sobic006G109300 Sobic004G198000 Sobic004G198000 Sobic005G046100--Sobic004G198000 Sobic010G055500 Sobic010G055500 Sobic005G046100--Sobic010G055500 Sobic009G137800 Sobic009G137800 Sobic005G046100--Sobic009G137800 Sobic001G290200 Sobic001G290200 Sobic005G046100--Sobic001G290200 Sobic003G026300 Sobic003G026300 Sobic005G046100--Sobic003G026300 Sobic007G191100 Sobic007G191100 Sobic010G077600--Sobic007G191100 Sobic003G044900 Sobic003G044900 Sobic010G077600--Sobic003G044900 Sobic003G093600 Sobic003G093600 Sobic010G077600--Sobic003G093600 Sobic009G214600 Sobic009G214600 Sobic010G077600--Sobic009G214600 Sobic003G185200 Sobic003G185200 Sobic010G077600--Sobic003G185200 Sobic007G094801 Sobic007G094801 Sobic010G077600--Sobic007G094801 Sobic009G257300 Sobic009G257300 Sobic010G077600--Sobic009G257300 Sobic004G143700 Sobic004G143700 Sobic010G077600--Sobic004G143700 Sobic004G119000 Sobic004G119000 Sobic010G077600--Sobic004G119000 Sobic009G183500 Sobic009G183500 Sobic003G034500--Sobic009G183500 Sobic001G516500 Sobic001G516500 Sobic003G034500--Sobic001G516500 Sobic001G032100 Sobic001G032100 Sobic003G034500--Sobic001G032100 Sobic008G126200 Sobic008G126200 Sobic003G034500--Sobic008G126200 Sobic001G247400 Sobic001G247400 Sobic003G034500--Sobic001G247400 Sobic003G296600 Sobic003G296600 Sobic003G034500--Sobic003G296600 Sobic006G194150 Sobic006G194150 Sobic003G034500--Sobic006G194150 Sobic001G363100 Sobic001G363100 Sobic003G034500--Sobic001G363100 Sobic001G028800 Sobic001G028800 Sobic003G034500--Sobic001G028800 Sobic004G164500 Sobic004G164500 Sobic009G065000--Sobic004G164500 Sobic001G311000 Sobic001G311000 Sobic009G065000--Sobic001G311000 Sobic009G065000--Sobic001G206000 Sobic008G106800 Sobic008G106800 Sobic009G065000--Sobic008G106800 Sobic006G257900 Sobic006G257900 Sobic009G065000--Sobic006G257900 Sobic001G471900 Sobic001G471900 Sobic009G065000--Sobic001G471900 Sobic007G177100 Sobic007G177100 Sobic009G065000--Sobic007G177100 Sobic010G228600 Sobic010G228600 Sobic009G065000--Sobic010G228600 Sobic009G065000--Sobic003G116700 Sobic002G119800 Sobic002G119800 Sobic004G332000--Sobic002G119800 Sobic006G213601 Sobic006G213601 Sobic004G332000--Sobic006G213601 Sobic001G262900 Sobic001G262900 Sobic004G332000--Sobic001G262900 Sobic001G072200 Sobic001G072200 Sobic004G332000--Sobic001G072200 Sobic003G374500 Sobic003G374500 Sobic004G332000--Sobic003G374500 Sobic004G332000--Sobic006G255100 Sobic004G152601 Sobic004G152601 Sobic004G332000--Sobic004G152601 Sobic007G136700 Sobic007G136700 Sobic004G332000--Sobic007G136700 Sobic002G067100 Sobic002G067100 Sobic004G332000--Sobic002G067100 Sobic003G359300 Sobic003G359300 Sobic003G248500--Sobic003G359300 Sobic004G283000 Sobic004G283000 Sobic003G248500--Sobic004G283000 Sobic010G174800 Sobic010G174800 Sobic003G248500--Sobic010G174800 Sobic001G390500 Sobic001G390500 Sobic003G248500--Sobic001G390500 Sobic002G197100 Sobic002G197100 Sobic003G248500--Sobic002G197100 Sobic003G248500--Sobic003G185200 Sobic002G365100 Sobic002G365100 Sobic003G248500--Sobic002G365100 Sobic003G051200 Sobic003G051200 Sobic003G248500--Sobic003G051200 Sobic006G128800 Sobic006G128800 Sobic003G248500--Sobic006G128800 Sobic001G206000--Sobic003G116700 Sobic001G149700 Sobic001G149700 Sobic001G206000--Sobic001G149700 Sobic001G206000--Sobic009G065000 Sobic001G206000--Sobic010G055500 Sobic001G281700 Sobic001G281700 Sobic001G206000--Sobic001G281700 Sobic004G231400 Sobic004G231400 Sobic001G206000--Sobic004G231400 Sobic003G317200 Sobic003G317200 Sobic001G206000--Sobic003G317200 Sobic010G071200 Sobic010G071200 Sobic001G206000--Sobic010G071200 Sobic007G079700 Sobic007G079700 Sobic001G206000--Sobic007G079700 Sobic003G116700--Sobic001G206000 Sobic003G116700--Sobic001G149700 Sobic001G441600 Sobic001G441600 Sobic003G116700--Sobic001G441600 Sobic003G116700--Sobic007G079700 Sobic004G014000 Sobic004G014000 Sobic003G116700--Sobic004G014000 Sobic007G126200 Sobic007G126200 Sobic003G116700--Sobic007G126200 Sobic003G116700--Sobic009G065000 Sobic003G116700--Sobic010G055500 Sobic001G078500 Sobic001G078500 Sobic003G116700--Sobic001G078500 Sobic003G044200 Sobic003G044200 Sobic001G065700--Sobic003G044200 Sobic001G065700--Sobic010G055500 Sobic006G225600 Sobic006G225600 Sobic001G065700--Sobic006G225600 Sobic001G512900 Sobic001G512900 Sobic001G065700--Sobic001G512900 Sobic009G193400 Sobic009G193400 Sobic001G065700--Sobic009G193400 Sobic001G065700--Sobic002G365100 Sobic001G098200 Sobic001G098200 Sobic001G065700--Sobic001G098200 Sobic001G065700--Sobic003G051200 Sobic004G253000 Sobic004G253000 Sobic001G065700--Sobic004G253000
Octagon: transcription factors


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