Gene annotation
Transcriptome id Sobic.006G263700.4,Sobic.006G263700.6,Sobic.006G263700.5,Sobic.006G263700.8,Sobic.006G263700.7,Sobic.006G263700.10,Sobic.006G263700.9
Synonym Sb06g032640
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
tetratricopeptide repeat domain containing protein, expressed
UniProt C5YAF8
Pfam PF13432
Panther DB PTHR22904 PTHR22904:SF368
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G17670 : tetratricopeptide repeat (TPR)-containing protein
RAP-DB (Rice) LOC_Os04g57780.1 : tetratricopeptide repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a009342
Brachypodium PNT62130 , PNT62129 , KQJ85255
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.006G263700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G330400 pentatricopeptide, putative, expressed -
2 Sobic.004G016500 PPR repeat domain containing protein, putative, expressed -
3 Sobic.001G543900 H(+)-ATPase 7(PubMedID : 26320239)@E1-E2 ATPase domain containing protein, expressed K01535: PMA1, H+-transporting ATPase
4 Sobic.006G123900 chloroplastic group IIA intron splicing facilitator CRS1, chloroplast precursor, putative, expressed -
5 Sobic.002G001600 MBTB12 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
6 Sobic.006G191400 - -
7 Sobic.007G094801 - -
8 Sobic.010G146700 transmembrane amino acid transporter protein, putative, expressed K15015: SLC32A, solute carrier family 32 (vesicular inhibitory amino acid transporter)
9 Sobic.008G106000 eukaryotic translation initiation factor 5B, putative, expressed K03243: translation initiation factor 5B
10 Sobic.001G046600 cycloartenol-C-24-methyltransferase 1, putative, expressed -
11 Sobic.004G118700 cbxX, chromosomal, putative, expressed -
12 Sobic.004G169501 - -
13 Sobic.002G313300 bromodomain domain containing protein, expressed -
14 Sobic.009G251300 endonuclease, putative, expressed -
15 Sobic.008G116500 plus-3 domain containing protein, expressed K15178: RNA polymerase-associated protein RTF1
16 Sobic.006G009400 G-patch domain containing protein, expressed -
17 Sobic.003G201750 - -
18 Sobic.003G315332 - K15421: secretion-regulating guanine nucleotide exchange factor
19 Sobic.001G267233 - -
20 Sobic.010G263800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized protein(PubMedID : 28640841)@UPF0183 protein, putative, expressed -


Gene co-expression network
sample Sobic006G263700 Sobic006G263700 Sobic002G330400 Sobic002G330400 Sobic006G263700--Sobic002G330400 Sobic004G016500 Sobic004G016500 Sobic006G263700--Sobic004G016500 Sobic001G543900 Sobic001G543900 Sobic006G263700--Sobic001G543900 Sobic006G123900 Sobic006G123900 Sobic006G263700--Sobic006G123900 Sobic002G001600 Sobic002G001600 Sobic006G263700--Sobic002G001600 Sobic006G191400 Sobic006G191400 Sobic006G263700--Sobic006G191400 Sobic007G094801 Sobic007G094801 Sobic006G263700--Sobic007G094801 Sobic010G146700 Sobic010G146700 Sobic006G263700--Sobic010G146700 Sobic008G106000 Sobic008G106000 Sobic006G263700--Sobic008G106000 Sobic002G330400--Sobic006G263700 Sobic002G330400--Sobic004G016500 Sobic002G330400--Sobic006G191400 Sobic001G046600 Sobic001G046600 Sobic002G330400--Sobic001G046600 Sobic002G330400--Sobic001G543900 Sobic009G251300 Sobic009G251300 Sobic002G330400--Sobic009G251300 Sobic005G187200 Sobic005G187200 Sobic002G330400--Sobic005G187200 Sobic001G479500 Sobic001G479500 Sobic002G330400--Sobic001G479500 Sobic006G009400 Sobic006G009400 Sobic002G330400--Sobic006G009400 Sobic004G016500--Sobic001G046600 Sobic002G150766 Sobic002G150766 Sobic004G016500--Sobic002G150766 Sobic004G016500--Sobic002G330400 Sobic008G167300 Sobic008G167300 Sobic004G016500--Sobic008G167300 Sobic004G212800 Sobic004G212800 Sobic004G016500--Sobic004G212800 Sobic003G057800 Sobic003G057800 Sobic004G016500--Sobic003G057800 Sobic004G016500--Sobic001G479500 Sobic004G164600 Sobic004G164600 Sobic004G016500--Sobic004G164600 Sobic003G424100 Sobic003G424100 Sobic004G016500--Sobic003G424100 Sobic001G477800 Sobic001G477800 Sobic001G543900--Sobic001G477800 Sobic002G313300 Sobic002G313300 Sobic001G543900--Sobic002G313300 Sobic004G112500 Sobic004G112500 Sobic001G543900--Sobic004G112500 Sobic001G543900--Sobic002G001600 Sobic001G543900--Sobic006G009400 Sobic002G166700 Sobic002G166700 Sobic001G543900--Sobic002G166700 Sobic005G130200 Sobic005G130200 Sobic001G543900--Sobic005G130200 Sobic001G272000 Sobic001G272000 Sobic001G543900--Sobic001G272000 Sobic010G248200 Sobic010G248200 Sobic001G543900--Sobic010G248200 Sobic006G123900--Sobic008G106000 Sobic006G123900--Sobic002G001600 Sobic005G059100 Sobic005G059100 Sobic006G123900--Sobic005G059100 Sobic006G123900--Sobic002G313300 Sobic006G013500 Sobic006G013500 Sobic006G123900--Sobic006G013500 Sobic008G129700 Sobic008G129700 Sobic006G123900--Sobic008G129700 Sobic006G080300 Sobic006G080300 Sobic006G123900--Sobic006G080300 Sobic007G185900 Sobic007G185900 Sobic006G123900--Sobic007G185900 Sobic002G151600 Sobic002G151600 Sobic006G123900--Sobic002G151600 Sobic008G116500 Sobic008G116500 Sobic002G001600--Sobic008G116500 Sobic002G001600--Sobic001G543900 Sobic002G001600--Sobic002G313300 Sobic008G101800 Sobic008G101800 Sobic002G001600--Sobic008G101800 Sobic002G001600--Sobic007G185900 Sobic002G001600--Sobic002G166700 Sobic002G001600--Sobic008G106000 Sobic007G037100 Sobic007G037100 Sobic002G001600--Sobic007G037100 Sobic002G166600 Sobic002G166600 Sobic002G001600--Sobic002G166600 Sobic006G191400--Sobic002G330400 Sobic001G303675 Sobic001G303675 Sobic006G191400--Sobic001G303675 Sobic004G211400 Sobic004G211400 Sobic006G191400--Sobic004G211400 Sobic003G163100 Sobic003G163100 Sobic006G191400--Sobic003G163100 Sobic002G209600 Sobic002G209600 Sobic006G191400--Sobic002G209600 Sobic008G136200 Sobic008G136200 Sobic006G191400--Sobic008G136200 Sobic006G191400--Sobic002G151600 Sobic009G045700 Sobic009G045700 Sobic006G191400--Sobic009G045700 Sobic007G052900 Sobic007G052900 Sobic006G191400--Sobic007G052900 Sobic010G074500 Sobic010G074500 Sobic007G094801--Sobic010G074500 Sobic010G263800 Sobic010G263800 Sobic007G094801--Sobic010G263800 Sobic007G011400 Sobic007G011400 Sobic007G094801--Sobic007G011400 Sobic008G034600 Sobic008G034600 Sobic007G094801--Sobic008G034600 Sobic006G129700 Sobic006G129700 Sobic007G094801--Sobic006G129700 Sobic003G315332 Sobic003G315332 Sobic007G094801--Sobic003G315332 Sobic007G205800 Sobic007G205800 Sobic007G094801--Sobic007G205800 Sobic007G191100 Sobic007G191100 Sobic007G094801--Sobic007G191100 Sobic004G143700 Sobic004G143700 Sobic007G094801--Sobic004G143700 Sobic010G146700--Sobic001G479500 Sobic010G146700--Sobic001G046600 Sobic010G146700--Sobic004G016500 Sobic010G146700--Sobic005G130200 Sobic010G146700--Sobic004G212800 Sobic010G146700--Sobic008G167300 Sobic010G146700--Sobic004G112500 Sobic010G146700--Sobic010G248200 Sobic002G283300 Sobic002G283300 Sobic010G146700--Sobic002G283300 Sobic008G106000--Sobic001G543900 Sobic008G106000--Sobic002G001600 Sobic008G106000--Sobic006G123900 Sobic008G106000--Sobic002G313300 Sobic008G106000--Sobic007G185900 Sobic008G106000--Sobic002G330400 Sobic008G106000--Sobic006G009400 Sobic008G106000--Sobic008G116500 Sobic002G077200 Sobic002G077200 Sobic008G106000--Sobic002G077200
Octagon: transcription factors


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