Gene annotation
Transcriptome id Sobic.006G277200.1
Synonym TLP1, Sb06g033820, AtTLP1
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
OsFBT6 - F-box and tubby domain containing protein, expressed
UniProt A0A1Z5RFZ9
Pfam PF00646 PF01167
Panther DB PTHR16517 PTHR16517:SF38
NCBI CDD KOG2502; Tub family proteins
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT1G76900 : tubby like protein 1
RAP-DB (Rice) LOC_Os04g59130.1 : OsFBT6 - F-box and tubby domain containing protein, expressed
MaizeGDB (Corn) Zm00025a053998 , Zm00025a034171 , Zm00025a021720 , Zm00025a043841 , Zm00025a010516
Brachypodium KQJ94772 , PNT64127 , KQK00939 , KQJ85450 , KQJ89302 , KQJ89301
Barley HORVU1Hr1G074940.11 , HORVU1Hr1G074940.10 , HORVU6Hr1G068970.7 , HORVU6Hr1G068970.5 , HORVU6Hr1G068970.6 , HORVU6Hr1G068970.2 , HORVU6Hr1G068970.3 , HORVU6Hr1G068970.1 , HORVU6Hr1G068970.4 , HORVU1Hr1G074940.1 , HORVU1Hr1G074940.3 , HORVU1Hr1G074940.2 , HORVU1Hr1G074940.7 , HORVU1Hr1G074940.9 , HORVU3Hr1G083290.5 , HORVU3Hr1G083290.4 , HORVU3Hr1G083290.7 , HORVU3Hr1G083290.6 , HORVU3Hr1G083290.1 , HORVU3Hr1G083290.3 , HORVU3Hr1G083290.2 , HORVU4Hr1G020110.4 , HORVU4Hr1G020110.2 , HORVU4Hr1G020110.3 , HORVU4Hr1G020110.1 , HORVU2Hr1G124880.1 , HORVU2Hr1G124880.3 , HORVU2Hr1G124880.2 , HORVU2Hr1G124880.5 , HORVU2Hr1G124880.4 , HORVU2Hr1G124880.7 , HORVU2Hr1G124880.6 , HORVU2Hr1G124880.9 , HORVU2Hr1G124880.8 , HORVU2Hr1G124880.11 , HORVU2Hr1G124880.10 , HORVU2Hr1G124880.13 , HORVU2Hr1G124880.12
Wheat TraesCS7B02G227000 , TraesCS2D02G584900 , TraesCS2B02G613800 , TraesCS4B02G112600 , TraesCS1A02G273100 , TraesCS1B02G282900 , TraesCS6D02G252800 , TraesCS6D02G252800 , TraesCS3D02G371600 , TraesCS6B02G300200 , TraesCS6A02G272800 , TraesCS6A02G272800 , TraesCS7D02G323100 , TraesCS3B02G411000 , TraesCS4D02G110100 , TraesCS1D02G273200 , TraesCS2A02G574000 , TraesCS3A02G378300 , TraesCS7A02G326400 , TraesCS4A02G209000
Populus -


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cDNA sequences
Sobic.006G277200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G045000 CAMK_CAMK_like.24 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
2 Sobic.001G321500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsFBX391 - F-box domain containing protein, expressed -
3 Sobic.004G214100 "BC14(Ortholog in rice:Zhang et al., 2011)"(PubMedID : 31659885)@transporter family protein, putative, expressed K15281: solute carrier family 35
4 Sobic.001G285000 - -
5 Sobic.002G119800 arginyl-tRNA synthetase, putative, expressed -
6 Sobic.006G047000 CBS domain containing membrane protein, putative, expressed -
7 Sobic.009G080200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@CAPIP1, putative, expressed K14496: abscisic acid receptor PYR/PYL family
8 Sobic.005G229400 GRAS family transcription factor domain containing protein, expressed -
9 Sobic.004G173500 CAMK_CAMK_like.13 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K14498: serine/threonine-protein kinase SRK2
10 Sobic.006G194500 expressed protein -
11 Sobic.002G212000 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed K09286: EREBP-like factor
12 Sobic.003G405900 mitochondrial import receptor subunit TOM20, putative, expressed -
13 Sobic.001G526100 uncharacterized Cys-rich domain containing protein, putative, expressed -
14 Sobic.007G120401 - -
15 Sobic.003G141000 protein phosphatase 2C, putative, expressed K14803: protein phosphatase PTC2/3
16 Sobic.001G430800 GA17271-PA, putative, expressed -
17 Sobic.003G381000 transcriptional regulator, putative, expressed -
18 Sobic.001G410100 CGMC_MAPKCGMC_2_ERK.2 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3
19 Sobic.009G199700 expressed protein -
20 Sobic.003G299000 protein of unknown function DUF1421 domain containing protein, expressed -


Gene co-expression network
sample Sobic006G277200 Sobic006G277200 Sobic001G045000 Sobic001G045000 Sobic006G277200--Sobic001G045000 Sobic001G321500 Sobic001G321500 Sobic006G277200--Sobic001G321500 Sobic004G214100 Sobic004G214100 Sobic006G277200--Sobic004G214100 Sobic001G285000 Sobic001G285000 Sobic006G277200--Sobic001G285000 Sobic002G119800 Sobic002G119800 Sobic006G277200--Sobic002G119800 Sobic006G047000 Sobic006G047000 Sobic006G277200--Sobic006G047000 Sobic009G080200 Sobic009G080200 Sobic006G277200--Sobic009G080200 Sobic005G229400 Sobic005G229400 Sobic006G277200--Sobic005G229400 Sobic004G173500 Sobic004G173500 Sobic006G277200--Sobic004G173500 Sobic001G045000--Sobic001G321500 Sobic001G045000--Sobic005G229400 Sobic010G090900 Sobic010G090900 Sobic001G045000--Sobic010G090900 Sobic001G045000--Sobic004G173500 Sobic001G045000--Sobic006G277200 Sobic001G045000--Sobic002G119800 Sobic010G009400 Sobic010G009400 Sobic001G045000--Sobic010G009400 Sobic005G129400 Sobic005G129400 Sobic001G045000--Sobic005G129400 Sobic001G045000--Sobic004G214100 Sobic004G352900 Sobic004G352900 Sobic001G321500--Sobic004G352900 Sobic001G321500--Sobic001G285000 Sobic001G321500--Sobic001G045000 Sobic006G138500 Sobic006G138500 Sobic001G321500--Sobic006G138500 Sobic001G321500--Sobic006G047000 Sobic006G044932 Sobic006G044932 Sobic001G321500--Sobic006G044932 Sobic001G321500--Sobic004G173500 Sobic001G343900 Sobic001G343900 Sobic001G321500--Sobic001G343900 Sobic010G047400 Sobic010G047400 Sobic001G321500--Sobic010G047400 Sobic001G022600 Sobic001G022600 Sobic004G214100--Sobic001G022600 Sobic004G227300 Sobic004G227300 Sobic004G214100--Sobic004G227300 Sobic009G190800 Sobic009G190800 Sobic004G214100--Sobic009G190800 Sobic001G261597 Sobic001G261597 Sobic004G214100--Sobic001G261597 Sobic003G359900 Sobic003G359900 Sobic004G214100--Sobic003G359900 Sobic006G269000 Sobic006G269000 Sobic004G214100--Sobic006G269000 Sobic007G168200 Sobic007G168200 Sobic004G214100--Sobic007G168200 Sobic001G427500 Sobic001G427500 Sobic004G214100--Sobic001G427500 Sobic004G214100--Sobic010G009400 Sobic009G156300 Sobic009G156300 Sobic001G285000--Sobic009G156300 Sobic001G285000--Sobic004G352900 Sobic010G066300 Sobic010G066300 Sobic001G285000--Sobic010G066300 Sobic001G285000--Sobic001G321500 Sobic001G285000--Sobic005G229400 Sobic002G117200 Sobic002G117200 Sobic001G285000--Sobic002G117200 Sobic001G410100 Sobic001G410100 Sobic001G285000--Sobic001G410100 Sobic003G296300 Sobic003G296300 Sobic001G285000--Sobic003G296300 Sobic001G530350 Sobic001G530350 Sobic001G285000--Sobic001G530350 Sobic004G332000 Sobic004G332000 Sobic002G119800--Sobic004G332000 Sobic009G059700 Sobic009G059700 Sobic002G119800--Sobic009G059700 Sobic006G213601 Sobic006G213601 Sobic002G119800--Sobic006G213601 Sobic008G016900 Sobic008G016900 Sobic002G119800--Sobic008G016900 Sobic001G162100 Sobic001G162100 Sobic002G119800--Sobic001G162100 Sobic009G230700 Sobic009G230700 Sobic002G119800--Sobic009G230700 Sobic009G134600 Sobic009G134600 Sobic002G119800--Sobic009G134600 Sobic007G011000 Sobic007G011000 Sobic002G119800--Sobic007G011000 Sobic004G145200 Sobic004G145200 Sobic002G119800--Sobic004G145200 Sobic001G234300 Sobic001G234300 Sobic006G047000--Sobic001G234300 Sobic002G421600 Sobic002G421600 Sobic006G047000--Sobic002G421600 Sobic007G177100 Sobic007G177100 Sobic006G047000--Sobic007G177100 Sobic007G126100 Sobic007G126100 Sobic006G047000--Sobic007G126100 Sobic010G030401 Sobic010G030401 Sobic006G047000--Sobic010G030401 Sobic010G250600 Sobic010G250600 Sobic006G047000--Sobic010G250600 Sobic006G159300 Sobic006G159300 Sobic006G047000--Sobic006G159300 Sobic006G047000--Sobic001G321500 Sobic010G194300 Sobic010G194300 Sobic006G047000--Sobic010G194300 Sobic003G013600 Sobic003G013600 Sobic009G080200--Sobic003G013600 Sobic009G080200--Sobic001G285000 Sobic009G080200--Sobic002G117200 Sobic004G275200 Sobic004G275200 Sobic009G080200--Sobic004G275200 Sobic002G123200 Sobic002G123200 Sobic009G080200--Sobic002G123200 Sobic009G080200--Sobic009G156300 Sobic003G123300 Sobic003G123300 Sobic009G080200--Sobic003G123300 Sobic001G078200 Sobic001G078200 Sobic009G080200--Sobic001G078200 Sobic002G194700 Sobic002G194700 Sobic009G080200--Sobic002G194700 Sobic005G229400--Sobic010G009400 Sobic002G301800 Sobic002G301800 Sobic005G229400--Sobic002G301800 Sobic005G229400--Sobic001G285000 Sobic005G229400--Sobic001G045000 Sobic005G229400--Sobic009G156300 Sobic005G229400--Sobic004G227300 Sobic001G288100 Sobic001G288100 Sobic005G229400--Sobic001G288100 Sobic009G100500 Sobic009G100500 Sobic005G229400--Sobic009G100500 Sobic005G229400--Sobic001G162100 Sobic004G173500--Sobic001G321500 Sobic009G127000 Sobic009G127000 Sobic004G173500--Sobic009G127000 Sobic004G173500--Sobic001G045000 Sobic002G296300 Sobic002G296300 Sobic004G173500--Sobic002G296300 Sobic008G097401 Sobic008G097401 Sobic004G173500--Sobic008G097401 Sobic004G173500--Sobic004G145200 Sobic002G378800 Sobic002G378800 Sobic004G173500--Sobic002G378800 Sobic002G258100 Sobic002G258100 Sobic004G173500--Sobic002G258100 Sobic010G012300 Sobic010G012300 Sobic004G173500--Sobic010G012300
Octagon: transcription factors


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