Gene annotation
Transcriptome id Sobic.007G005300.2,Sobic.007G005300.1,Sobic.007G005300.3
Synonym Sb07g000650
Functional annotation RING finger protein 13, putative, expressed
UniProt A0A1B6PES1
Pfam PF13639 PF02225
Panther DB PTHR22765 PTHR22765:SF46
NCBI CDD KOG4628; Predicted E3 ubiquitin ligase
KEGG Orthology K15692; RNF13, E3 ubiquitin-protein ligase RNF13
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT1G71980 : Protease-associated (PA) RING/U-box zinc finger family protein
RAP-DB (Rice) LOC_Os08g01360.2,LOC_Os08g01360.1 : RING finger protein 13, putative, expressed
MaizeGDB (Corn) Zm00025a040150 , Zm00025a030313
Brachypodium KQJ85502 , PNT66496 , KQJ94780 , KQJ94781
Barley -
Wheat TraesCS7D02G322500 , TraesCS7D02G322500 , TraesCS7B02G226400 , TraesCS7B02G226400 , TraesCS7B02G226400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G288200 expressed protein -
2 Sobic.003G370500 hydrolase, alpha/beta fold family domain containing protein, expressed K07019: uncharacterized protein
3 Sobic.001G031100 dolichyl-phosphate beta-glycosyltransferase, putative, expressed K00721: dolichol-phosphate mannosyltransferase
4 Sobic.001G019800 FAD binding domain containing protein, expressed K06126: ubiquinone biosynthesis monooxygenase Coq6
5 Sobic.001G207500 ZOS10-06 - C2H2 zinc finger protein, expressed K15685: E3 ubiquitin-protein ligase Hakai
6 Sobic.010G092300 N-rich protein, putative, expressed -
7 Sobic.007G061400 heat shock protein DnaJ, putative, expressed K09539: DnaJ homolog subfamily C member 19
8 Sobic.010G265300 AAA-type ATPase family protein, putative, expressed -
9 Sobic.003G212500 heat shock protein DnaJ, putative, expressed K04082: hscB, HSCB, molecular chaperone HscB
10 Sobic.007G167900 signal peptide peptidase domain containing protein, expressed K09598: signal peptide peptidase-like 3
11 Sobic.001G294900 KH domain containing protein, putative, expressed K13162: poly(rC)-binding protein 2
12 Sobic.003G349300 serine/threonine-protein kinase AFC1, putative, expressed K08287: dual-specificity kinase
13 Sobic.009G192000 transcription initiation factor IIF beta subunit, putative, expressed K03139: TFIIF2, GTF2F2, transcription initiation factor TFIIF subunit beta
14 Sobic.007G105900 IscA-like iron-sulfur assembly protein, mitochondrial precursor, putative, expressed -
15 Sobic.001G428800 vacuolar sorting protein, putative, expressed -
16 Sobic.003G264200 Ser/Thr protein phosphatase family protein, putative, expressed K15498: serine/threonine-protein phosphatase 6 catalytic subunit
17 Sobic.002G047500 galactose-1-phosphate uridyl transferase, putative, expressed K00965: galT, UDPglucose--hexose-1-phosphate uridylyltransferase
18 Sobic.001G412100 CDP-alcohol phosphatidyltransferase, putative, expressed K00995: pgsA, CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase
19 Sobic.005G111900 uncharacterized protein family UPF0016 domain containing protein, expressed -
20 Sobic.007G071300 ribosomal protein L27, putative, expressed K02899: RP-L27, MRPL27, large subunit ribosomal protein L27


Gene co-expression network
sample Sobic007G005300 Sobic007G005300 Sobic002G288200 Sobic002G288200 Sobic007G005300--Sobic002G288200 Sobic003G370500 Sobic003G370500 Sobic007G005300--Sobic003G370500 Sobic001G031100 Sobic001G031100 Sobic007G005300--Sobic001G031100 Sobic001G019800 Sobic001G019800 Sobic007G005300--Sobic001G019800 Sobic001G207500 Sobic001G207500 Sobic007G005300--Sobic001G207500 Sobic010G092300 Sobic010G092300 Sobic007G005300--Sobic010G092300 Sobic007G061400 Sobic007G061400 Sobic007G005300--Sobic007G061400 Sobic010G265300 Sobic010G265300 Sobic007G005300--Sobic010G265300 Sobic003G212500 Sobic003G212500 Sobic007G005300--Sobic003G212500 Sobic002G288200--Sobic007G005300 Sobic003G048500 Sobic003G048500 Sobic002G288200--Sobic003G048500 Sobic006G212100 Sobic006G212100 Sobic002G288200--Sobic006G212100 Sobic002G288200--Sobic003G212500 Sobic002G047500 Sobic002G047500 Sobic002G288200--Sobic002G047500 Sobic001G294900 Sobic001G294900 Sobic002G288200--Sobic001G294900 Sobic001G112400 Sobic001G112400 Sobic002G288200--Sobic001G112400 Sobic001G512400 Sobic001G512400 Sobic002G288200--Sobic001G512400 Sobic002G194100 Sobic002G194100 Sobic002G288200--Sobic002G194100 Sobic003G370500--Sobic002G047500 Sobic004G054100 Sobic004G054100 Sobic003G370500--Sobic004G054100 Sobic004G352500 Sobic004G352500 Sobic003G370500--Sobic004G352500 Sobic003G370500--Sobic007G005300 Sobic006G274800 Sobic006G274800 Sobic003G370500--Sobic006G274800 Sobic008G048300 Sobic008G048300 Sobic003G370500--Sobic008G048300 Sobic002G376600 Sobic002G376600 Sobic003G370500--Sobic002G376600 Sobic002G181600 Sobic002G181600 Sobic003G370500--Sobic002G181600 Sobic003G370500--Sobic001G031100 Sobic009G192000 Sobic009G192000 Sobic001G031100--Sobic009G192000 Sobic003G264200 Sobic003G264200 Sobic001G031100--Sobic003G264200 Sobic001G007000 Sobic001G007000 Sobic001G031100--Sobic001G007000 Sobic001G031100--Sobic004G054100 Sobic002G047700 Sobic002G047700 Sobic001G031100--Sobic002G047700 Sobic009G222500 Sobic009G222500 Sobic001G031100--Sobic009G222500 Sobic001G080700 Sobic001G080700 Sobic001G031100--Sobic001G080700 Sobic009G068500 Sobic009G068500 Sobic001G031100--Sobic009G068500 Sobic010G251000 Sobic010G251000 Sobic001G031100--Sobic010G251000 Sobic007G093800 Sobic007G093800 Sobic001G019800--Sobic007G093800 Sobic002G117400 Sobic002G117400 Sobic001G019800--Sobic002G117400 Sobic003G193500 Sobic003G193500 Sobic001G019800--Sobic003G193500 Sobic004G252900 Sobic004G252900 Sobic001G019800--Sobic004G252900 Sobic003G264100 Sobic003G264100 Sobic001G019800--Sobic003G264100 Sobic004G092500 Sobic004G092500 Sobic001G019800--Sobic004G092500 Sobic001G019800--Sobic010G092300 Sobic005G160400 Sobic005G160400 Sobic001G019800--Sobic005G160400 Sobic001G019800--Sobic010G265300 Sobic001G341500 Sobic001G341500 Sobic001G207500--Sobic001G341500 Sobic003G395300 Sobic003G395300 Sobic001G207500--Sobic003G395300 Sobic007G105900 Sobic007G105900 Sobic001G207500--Sobic007G105900 Sobic001G405600 Sobic001G405600 Sobic001G207500--Sobic001G405600 Sobic007G167900 Sobic007G167900 Sobic001G207500--Sobic007G167900 Sobic003G273400 Sobic003G273400 Sobic001G207500--Sobic003G273400 Sobic006G039400 Sobic006G039400 Sobic001G207500--Sobic006G039400 Sobic001G358500 Sobic001G358500 Sobic001G207500--Sobic001G358500 Sobic002G347000 Sobic002G347000 Sobic001G207500--Sobic002G347000 Sobic003G340600 Sobic003G340600 Sobic010G092300--Sobic003G340600 Sobic010G092300--Sobic005G160400 Sobic010G092300--Sobic010G265300 Sobic010G092300--Sobic003G264200 Sobic002G167500 Sobic002G167500 Sobic010G092300--Sobic002G167500 Sobic010G092300--Sobic001G019800 Sobic009G162600 Sobic009G162600 Sobic010G092300--Sobic009G162600 Sobic007G078500 Sobic007G078500 Sobic010G092300--Sobic007G078500 Sobic010G092300--Sobic001G080700 Sobic006G002201 Sobic006G002201 Sobic007G061400--Sobic006G002201 Sobic005G111900 Sobic005G111900 Sobic007G061400--Sobic005G111900 Sobic010G205300 Sobic010G205300 Sobic007G061400--Sobic010G205300 Sobic003G196800 Sobic003G196800 Sobic007G061400--Sobic003G196800 Sobic001G502200 Sobic001G502200 Sobic007G061400--Sobic001G502200 Sobic007G061400--Sobic001G294900 Sobic001G458700 Sobic001G458700 Sobic007G061400--Sobic001G458700 Sobic010G057900 Sobic010G057900 Sobic007G061400--Sobic010G057900 Sobic003G124800 Sobic003G124800 Sobic007G061400--Sobic003G124800 Sobic001G120500 Sobic001G120500 Sobic010G265300--Sobic001G120500 Sobic010G265300--Sobic005G160400 Sobic010G265300--Sobic010G092300 Sobic005G172500 Sobic005G172500 Sobic010G265300--Sobic005G172500 Sobic008G076800 Sobic008G076800 Sobic010G265300--Sobic008G076800 Sobic010G265300--Sobic004G092500 Sobic007G084100 Sobic007G084100 Sobic010G265300--Sobic007G084100 Sobic004G257100 Sobic004G257100 Sobic010G265300--Sobic004G257100 Sobic001G226700 Sobic001G226700 Sobic010G265300--Sobic001G226700 Sobic003G212500--Sobic007G005300 Sobic003G212500--Sobic002G288200 Sobic004G115350 Sobic004G115350 Sobic003G212500--Sobic004G115350 Sobic003G212500--Sobic009G192000 Sobic001G524500 Sobic001G524500 Sobic003G212500--Sobic001G524500 Sobic001G105500 Sobic001G105500 Sobic003G212500--Sobic001G105500 Sobic001G512300 Sobic001G512300 Sobic003G212500--Sobic001G512300 Sobic004G307600 Sobic004G307600 Sobic003G212500--Sobic004G307600 Sobic003G212500--Sobic001G031100
Octagon: transcription factors


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