Gene annotation
Transcriptome id Sobic.007G180450.1
Synonym -
Functional annotation -
UniProt A0A1Z5RB14
Pfam PF01694 PF00295
Panther DB PTHR31375 PTHR31375:SF16
NCBI CDD -
KEGG Orthology K01213; galacturan 1,4-alpha-galacturonidase
Gene Ontology GO:0016021; integral component of membrane GO:0004252serine-type endopeptidase activity GO:0005975carbohydrate metabolic process GO:0004650polygalacturonase activity


Orthologs (automatic annotation)
TAIR AT5G07250 : RHOMBOID-like protein 3
RAP-DB (Rice) LOC_Os06g31270.1 : polygalacturonase, putative, expressed
MaizeGDB (Corn) Zm00025a033644 , Zm00025a033646
Brachypodium KQJ84052
Barley HORVU3Hr1G090110.2 , HORVU3Hr1G090110.1
Wheat TraesCS7A02G270000 , TraesCS7D02G270500 , TraesCS3A02G401500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G179000 growth regulator related protein, putative, expressed -
2 Sobic.001G043400 expressed protein -
3 Sobic.001G036800 AP2 domain containing protein, expressed K09284: AP2-like factor, euAP2 lineage
4 Sobic.004G232000 TLD family protein, putative, expressed -
5 Sobic.001G087100 far-red light perception and signal transduction(PubMedID : 14963106)@phytochrome C, putative, expressed -
6 Sobic.004G018100 glutamyl-tRNA synthetase, putative, expressed K01885: EARS, glutamyl-tRNA synthetase
7 Sobic.004G325400 cyclic nucleotide-gated ion channel 14, putative, expressed K05391: cyclic nucleotide gated channel, plant
8 Sobic.001G543700 palmitoyl-protein thioesterase 1 precursor, putative, expressed K01074: palmitoyl-protein thioesterase
9 Sobic.001G114400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phosphoribosylformylglycinamidine synthase, putative, expressed K01952: PFAS, phosphoribosylformylglycinamidine synthase
10 Sobic.005G182200 NBS-LRR disease resistance protein, putative, expressed K13457: RPM1, disease resistance protein RPM1
11 Sobic.009G096100 endoribonuclease Dicer, putative, expressed -
12 Sobic.002G409800 xylose isomerase, putative, expressed K01805: xylose isomerase
13 Sobic.003G196900 esterase/lipase/thioesterase, putative, expressed K06889: uncharacterized protein
14 Sobic.006G228700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@TKL_IRAK_CrRLK1L-1.3 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed -
15 Sobic.006G281066 - -
16 Sobic.001G233700 transmembrane protein-related, putative, expressed -
17 Sobic.002G392700 FGGY family of carbohydrate kinases, putative, expressed K00854: xylB, xylulokinase
18 Sobic.001G321400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CCB2, putative, expressed -
19 Sobic.002G076000 transporter-related, putative, expressed -
20 Sobic.001G017600 protein of unknown function containing protein, expressed -


Gene co-expression network
sample Sobic007G180450 Sobic007G180450 Sobic006G179000 Sobic006G179000 Sobic007G180450--Sobic006G179000 Sobic001G043400 Sobic001G043400 Sobic007G180450--Sobic001G043400 Sobic001G036800 Sobic001G036800 Sobic007G180450--Sobic001G036800 Sobic004G232000 Sobic004G232000 Sobic007G180450--Sobic004G232000 Sobic001G087100 Sobic001G087100 Sobic007G180450--Sobic001G087100 Sobic004G018100 Sobic004G018100 Sobic007G180450--Sobic004G018100 Sobic004G325400 Sobic004G325400 Sobic007G180450--Sobic004G325400 Sobic001G543700 Sobic001G543700 Sobic007G180450--Sobic001G543700 Sobic001G114400 Sobic001G114400 Sobic007G180450--Sobic001G114400 Sobic006G179000--Sobic007G180450 Sobic006G179000--Sobic004G232000 Sobic009G096100 Sobic009G096100 Sobic006G179000--Sobic009G096100 Sobic001G187800 Sobic001G187800 Sobic006G179000--Sobic001G187800 Sobic006G179000--Sobic001G087100 Sobic007G043900 Sobic007G043900 Sobic006G179000--Sobic007G043900 Sobic003G419800 Sobic003G419800 Sobic006G179000--Sobic003G419800 Sobic001G009400 Sobic001G009400 Sobic006G179000--Sobic001G009400 Sobic005G209000 Sobic005G209000 Sobic006G179000--Sobic005G209000 Sobic001G043400--Sobic001G087100 Sobic001G043400--Sobic004G232000 Sobic005G025300 Sobic005G025300 Sobic001G043400--Sobic005G025300 Sobic010G166000 Sobic010G166000 Sobic001G043400--Sobic010G166000 Sobic004G096500 Sobic004G096500 Sobic001G043400--Sobic004G096500 Sobic007G216700 Sobic007G216700 Sobic001G043400--Sobic007G216700 Sobic004G219100 Sobic004G219100 Sobic001G043400--Sobic004G219100 Sobic004G018300 Sobic004G018300 Sobic001G043400--Sobic004G018300 Sobic010G268300 Sobic010G268300 Sobic001G043400--Sobic010G268300 Sobic001G532700 Sobic001G532700 Sobic001G036800--Sobic001G532700 Sobic004G128200 Sobic004G128200 Sobic001G036800--Sobic004G128200 Sobic007G000400 Sobic007G000400 Sobic001G036800--Sobic007G000400 Sobic002G427300 Sobic002G427300 Sobic001G036800--Sobic002G427300 Sobic001G036800--Sobic009G096100 Sobic001G036800--Sobic007G180450 Sobic001G036800--Sobic004G325400 Sobic001G267900 Sobic001G267900 Sobic001G036800--Sobic001G267900 Sobic004G178400 Sobic004G178400 Sobic001G036800--Sobic004G178400 Sobic004G232000--Sobic001G087100 Sobic004G232000--Sobic007G043900 Sobic009G030300 Sobic009G030300 Sobic004G232000--Sobic009G030300 Sobic002G076000 Sobic002G076000 Sobic004G232000--Sobic002G076000 Sobic002G259800 Sobic002G259800 Sobic004G232000--Sobic002G259800 Sobic005G084100 Sobic005G084100 Sobic004G232000--Sobic005G084100 Sobic004G232000--Sobic001G043400 Sobic009G040800 Sobic009G040800 Sobic004G232000--Sobic009G040800 Sobic005G009200 Sobic005G009200 Sobic004G232000--Sobic005G009200 Sobic001G087100--Sobic001G043400 Sobic001G087100--Sobic004G232000 Sobic005G015100 Sobic005G015100 Sobic001G087100--Sobic005G015100 Sobic003G174800 Sobic003G174800 Sobic001G087100--Sobic003G174800 Sobic009G015800 Sobic009G015800 Sobic001G087100--Sobic009G015800 Sobic001G087100--Sobic002G076000 Sobic001G087100--Sobic007G043900 Sobic009G225200 Sobic009G225200 Sobic001G087100--Sobic009G225200 Sobic001G087100--Sobic010G166000 Sobic008G090900 Sobic008G090900 Sobic004G018100--Sobic008G090900 Sobic003G040000 Sobic003G040000 Sobic004G018100--Sobic003G040000 Sobic006G021800 Sobic006G021800 Sobic004G018100--Sobic006G021800 Sobic006G058100 Sobic006G058100 Sobic004G018100--Sobic006G058100 Sobic004G263200 Sobic004G263200 Sobic004G018100--Sobic004G263200 Sobic002G181132 Sobic002G181132 Sobic004G018100--Sobic002G181132 Sobic007G095500 Sobic007G095500 Sobic004G018100--Sobic007G095500 Sobic004G214400 Sobic004G214400 Sobic004G018100--Sobic004G214400 Sobic003G345900 Sobic003G345900 Sobic004G018100--Sobic003G345900 Sobic009G257800 Sobic009G257800 Sobic004G325400--Sobic009G257800 Sobic007G027700 Sobic007G027700 Sobic004G325400--Sobic007G027700 Sobic007G009400 Sobic007G009400 Sobic004G325400--Sobic007G009400 Sobic003G401100 Sobic003G401100 Sobic004G325400--Sobic003G401100 Sobic001G143500 Sobic001G143500 Sobic004G325400--Sobic001G143500 Sobic004G021200 Sobic004G021200 Sobic004G325400--Sobic004G021200 Sobic003G401000 Sobic003G401000 Sobic004G325400--Sobic003G401000 Sobic004G072100 Sobic004G072100 Sobic004G325400--Sobic004G072100 Sobic008G127400 Sobic008G127400 Sobic004G325400--Sobic008G127400 Sobic010G221600 Sobic010G221600 Sobic001G543700--Sobic010G221600 Sobic001G543700--Sobic004G214400 Sobic006G281066 Sobic006G281066 Sobic001G543700--Sobic006G281066 Sobic003G236300 Sobic003G236300 Sobic001G543700--Sobic003G236300 Sobic006G082500 Sobic006G082500 Sobic001G543700--Sobic006G082500 Sobic004G296800 Sobic004G296800 Sobic001G543700--Sobic004G296800 Sobic003G071600 Sobic003G071600 Sobic001G543700--Sobic003G071600 Sobic003G265500 Sobic003G265500 Sobic001G543700--Sobic003G265500 Sobic001G478600 Sobic001G478600 Sobic001G543700--Sobic001G478600 Sobic003G222600 Sobic003G222600 Sobic001G114400--Sobic003G222600 Sobic002G191100 Sobic002G191100 Sobic001G114400--Sobic002G191100 Sobic003G030400 Sobic003G030400 Sobic001G114400--Sobic003G030400 Sobic009G036300 Sobic009G036300 Sobic001G114400--Sobic009G036300 Sobic004G070200 Sobic004G070200 Sobic001G114400--Sobic004G070200 Sobic008G148400 Sobic008G148400 Sobic001G114400--Sobic008G148400 Sobic010G039200 Sobic010G039200 Sobic001G114400--Sobic010G039200 Sobic003G324100 Sobic003G324100 Sobic001G114400--Sobic003G324100 Sobic010G211500 Sobic010G211500 Sobic001G114400--Sobic010G211500
Octagon: transcription factors


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