Gene annotation
Transcriptome id Sobic.002G409800.1,Sobic.002G409800.2
Synonym Sb02g042340
Functional annotation xylose isomerase, putative, expressed
UniProt A0A1B6QG50
Pfam -
Panther DB PTHR32176 PTHR32176:SF0
NCBI CDD -
KEGG Orthology K01805; xylose isomerase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G57655 : xylose isomerase family protein
RAP-DB (Rice) LOC_Os07g47290.1 : xylose isomerase, putative, expressed
MaizeGDB (Corn) Zm00025a008365 , Zm00025a049097 , Zm00025a037168 , Zm00025a015387 , Zm00025a033225
Brachypodium KQK14784
Barley HORVU2Hr1G020270.1 , HORVU2Hr1G020270.2 , HORVU2Hr1G020270.4
Wheat TraesCS2A02G117300 , TraesCS2D02G117900 , TraesCS2B02G137300 , TraesCS2B02G137300
Populus -


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cDNA sequences
Sobic.002G409800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G213100 beta-galactosidase 8 precursor, putative, expressed K12309: GLB1, beta-galactosidase
2 Sobic.003G158300 3-hydroxyacyl-CoA dehydrogenase, putative, expressed K10527: enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase
3 Sobic.002G076000 transporter-related, putative, expressed -
4 Sobic.002G392700 FGGY family of carbohydrate kinases, putative, expressed K00854: xylB, xylulokinase
5 Sobic.002G189400 AMP-binding enzyme, putative, expressed -
6 Sobic.001G017600 protein of unknown function containing protein, expressed -
7 Sobic.010G083000 expressed protein -
8 Sobic.009G055400 expressed protein -
9 Sobic.001G507900 methyltransferase, putative, expressed K00599: methyltransferase-like protein 6
10 Sobic.002G058400 disease resistance protein RPM1, putative, expressed K13457: RPM1, disease resistance protein RPM1
11 Sobic.010G106900 NAD binding domain of 6-phosphogluconate dehydrogenase containing protein, expressed -
12 Sobic.003G353600 pumilio-family RNA binding protein, putative, expressed K17943: pumilio RNA-binding family
13 Sobic.010G147833 - -
14 Sobic.006G056000 OsFBL16 - F-box domain and LRR containing protein, expressed -
15 Sobic.001G138400 crooked neck, putative, expressed K12869: CRN, CRNKL1, CLF1, crooked neck
16 Sobic.002G164800 SET domain containing protein, expressed K11423: [histone H3]-dimethyl-L-lysine36 N-methyltransferase
17 Sobic.004G225000 -(PubMedID : 27964718)@nitrilase, putative, expressed K01501: nitrilase
18 Sobic.001G214600 expressed protein -
19 Sobic.003G057700 WD domain, G-beta repeat domain containing protein, expressed -
20 Sobic.003G321900 CDP-alcohol phosphatidyltransferase, putative, expressed K08744: cardiolipin synthase (CMP-forming)


Gene co-expression network
sample Sobic002G409800 Sobic002G409800 Sobic009G213100 Sobic009G213100 Sobic002G409800--Sobic009G213100 Sobic003G158300 Sobic003G158300 Sobic002G409800--Sobic003G158300 Sobic002G076000 Sobic002G076000 Sobic002G409800--Sobic002G076000 Sobic002G392700 Sobic002G392700 Sobic002G409800--Sobic002G392700 Sobic002G189400 Sobic002G189400 Sobic002G409800--Sobic002G189400 Sobic001G017600 Sobic001G017600 Sobic002G409800--Sobic001G017600 Sobic010G083000 Sobic010G083000 Sobic002G409800--Sobic010G083000 Sobic009G055400 Sobic009G055400 Sobic002G409800--Sobic009G055400 Sobic001G507900 Sobic001G507900 Sobic002G409800--Sobic001G507900 Sobic009G213100--Sobic002G409800 Sobic009G213100--Sobic002G076000 Sobic009G213100--Sobic001G507900 Sobic009G213100--Sobic001G017600 Sobic009G062900 Sobic009G062900 Sobic009G213100--Sobic009G062900 Sobic003G070100 Sobic003G070100 Sobic009G213100--Sobic003G070100 Sobic002G079100 Sobic002G079100 Sobic009G213100--Sobic002G079100 Sobic006G215050 Sobic006G215050 Sobic009G213100--Sobic006G215050 Sobic006G217200 Sobic006G217200 Sobic009G213100--Sobic006G217200 Sobic003G158300--Sobic002G409800 Sobic003G158300--Sobic002G189400 Sobic001G414900 Sobic001G414900 Sobic003G158300--Sobic001G414900 Sobic004G127700 Sobic004G127700 Sobic003G158300--Sobic004G127700 Sobic003G158300--Sobic002G392700 Sobic010G205500 Sobic010G205500 Sobic003G158300--Sobic010G205500 Sobic001G233700 Sobic001G233700 Sobic003G158300--Sobic001G233700 Sobic010G112300 Sobic010G112300 Sobic003G158300--Sobic010G112300 Sobic002G409900 Sobic002G409900 Sobic003G158300--Sobic002G409900 Sobic006G056000 Sobic006G056000 Sobic002G076000--Sobic006G056000 Sobic005G084100 Sobic005G084100 Sobic002G076000--Sobic005G084100 Sobic003G353600 Sobic003G353600 Sobic002G076000--Sobic003G353600 Sobic002G076000--Sobic003G070100 Sobic009G100050 Sobic009G100050 Sobic002G076000--Sobic009G100050 Sobic004G232000 Sobic004G232000 Sobic002G076000--Sobic004G232000 Sobic004G325400 Sobic004G325400 Sobic002G076000--Sobic004G325400 Sobic002G076000--Sobic009G213100 Sobic002G076000--Sobic010G083000 Sobic002G392700--Sobic002G189400 Sobic010G106900 Sobic010G106900 Sobic002G392700--Sobic010G106900 Sobic001G389800 Sobic001G389800 Sobic002G392700--Sobic001G389800 Sobic002G392700--Sobic002G409800 Sobic006G281500 Sobic006G281500 Sobic002G392700--Sobic006G281500 Sobic010G017800 Sobic010G017800 Sobic002G392700--Sobic010G017800 Sobic002G392700--Sobic004G325400 Sobic010G249300 Sobic010G249300 Sobic002G392700--Sobic010G249300 Sobic002G317300 Sobic002G317300 Sobic002G392700--Sobic002G317300 Sobic010G228500 Sobic010G228500 Sobic002G189400--Sobic010G228500 Sobic004G339100 Sobic004G339100 Sobic002G189400--Sobic004G339100 Sobic006G083600 Sobic006G083600 Sobic002G189400--Sobic006G083600 Sobic009G148300 Sobic009G148300 Sobic002G189400--Sobic009G148300 Sobic007G202600 Sobic007G202600 Sobic002G189400--Sobic007G202600 Sobic004G113400 Sobic004G113400 Sobic002G189400--Sobic004G113400 Sobic002G189400--Sobic004G127700 Sobic008G099800 Sobic008G099800 Sobic002G189400--Sobic008G099800 Sobic002G111600 Sobic002G111600 Sobic002G189400--Sobic002G111600 Sobic008G133400 Sobic008G133400 Sobic001G017600--Sobic008G133400 Sobic008G083000 Sobic008G083000 Sobic001G017600--Sobic008G083000 Sobic007G061700 Sobic007G061700 Sobic001G017600--Sobic007G061700 Sobic005G182200 Sobic005G182200 Sobic001G017600--Sobic005G182200 Sobic009G257800 Sobic009G257800 Sobic001G017600--Sobic009G257800 Sobic003G442000 Sobic003G442000 Sobic001G017600--Sobic003G442000 Sobic010G256800 Sobic010G256800 Sobic001G017600--Sobic010G256800 Sobic001G498200 Sobic001G498200 Sobic001G017600--Sobic001G498200 Sobic002G158700 Sobic002G158700 Sobic001G017600--Sobic002G158700 Sobic010G083000--Sobic007G202600 Sobic010G083000--Sobic003G353600 Sobic010G083000--Sobic002G076000 Sobic002G423200 Sobic002G423200 Sobic010G083000--Sobic002G423200 Sobic002G288000 Sobic002G288000 Sobic010G083000--Sobic002G288000 Sobic010G083000--Sobic008G133400 Sobic007G041500 Sobic007G041500 Sobic010G083000--Sobic007G041500 Sobic010G083000--Sobic009G257800 Sobic010G083000--Sobic006G217200 Sobic001G366800 Sobic001G366800 Sobic009G055400--Sobic001G366800 Sobic009G055400--Sobic006G056000 Sobic009G096100 Sobic009G096100 Sobic009G055400--Sobic009G096100 Sobic009G055400--Sobic004G232000 Sobic003G131200 Sobic003G131200 Sobic009G055400--Sobic003G131200 Sobic009G126000 Sobic009G126000 Sobic009G055400--Sobic009G126000 Sobic009G055400--Sobic009G213100 Sobic002G192500 Sobic002G192500 Sobic009G055400--Sobic002G192500 Sobic009G253400 Sobic009G253400 Sobic009G055400--Sobic009G253400 Sobic001G507900--Sobic009G213100 Sobic001G138400 Sobic001G138400 Sobic001G507900--Sobic001G138400 Sobic001G226000 Sobic001G226000 Sobic001G507900--Sobic001G226000 Sobic009G040800 Sobic009G040800 Sobic001G507900--Sobic009G040800 Sobic001G507900--Sobic004G232000 Sobic002G127400 Sobic002G127400 Sobic001G507900--Sobic002G127400 Sobic010G278600 Sobic010G278600 Sobic001G507900--Sobic010G278600 Sobic001G335900 Sobic001G335900 Sobic001G507900--Sobic001G335900 Sobic001G393700 Sobic001G393700 Sobic001G507900--Sobic001G393700
Octagon: transcription factors


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