Gene annotation
Transcriptome id Sobic.007G209300.5,Sobic.007G209300.3,Sobic.007G209300.2,Sobic.007G209300.6,Sobic.007G209300.4,Sobic.007G209300.7
Synonym Sb07g027660
Functional annotation expressed protein
UniProt A0A1Z5RAY6 , A0A1Z5RBF7
Pfam PF08743
Panther DB PTHR16140 PTHR16140:SF3
NCBI CDD KOG2866; Uncharacterized conserved protein
KEGG Orthology -
Gene Ontology GO:0006281; DNA repair GO:0005634nucleus


Orthologs (automatic annotation)
TAIR AT1G51130 : Nse4, component of Smc5/6 DNA repair complex
RAP-DB (Rice) LOC_Os08g40010.1 : expressed protein
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G216201 - -
2 Sobic.001G520400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@RING-H2 finger protein ATL2A, putative, expressed -
3 Sobic.003G276750 - -
4 Sobic.002G190500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@alpha-amylase precursor, putative, expressed K01176: AMY, amyA, alpha-amylase
5 Sobic.003G025900 - -
6 Sobic.005G019800 ZF-HD protein dimerisation region containing protein, expressed -
7 Sobic.004G060900 STRUBBELIG-RECEPTOR FAMILY 3 precursor, putative, expressed -
8 Sobic.007G163901 - -
9 Sobic.003G241050 - -
10 Sobic.002G324000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@isocitrate lyase, putative, expressed K01637: E4.1.3.1, isocitrate lyase
11 Sobic.008G164800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@No apical meristem protein, putative, expressed -
12 Sobic.002G152200 AP2-associated protein kinase 1, putative, expressed K08853: AP2-associated kinase
13 Sobic.003G029800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@RNA-dependent RNA polymerase, putative, expressed K11699: RDR, RNA-dependent RNA polymerase
14 Sobic.004G113300 cyclic nucleotide-gated ion channel 1, putative, expressed K05391: cyclic nucleotide gated channel, plant
15 Sobic.004G321800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@saccharopine dehydrogenase, putative, expressed K14157: alpha-aminoadipic semialdehyde synthase
16 Sobic.004G345800 Peroxisomal 3-ketoacyl-CoA thiolase 3 PKT3 (At)(PubMedID : 27208977)@3-ketoacyl-CoA thiolase, peroxisomal precursor, putative, expressed K07513: acetyl-CoA acyltransferase 1
17 Sobic.004G320600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glycosyltransferase, putative, expressed -
18 Sobic.002G062900 NB-ARC domain containing protein, expressed -
19 Sobic.010G135900 - -
20 Sobic.001G542150 - -


Gene co-expression network
sample Sobic007G209300 Sobic007G209300 Sobic007G216201 Sobic007G216201 Sobic007G209300--Sobic007G216201 Sobic001G520400 Sobic001G520400 Sobic007G209300--Sobic001G520400 Sobic003G276750 Sobic003G276750 Sobic007G209300--Sobic003G276750 Sobic002G190500 Sobic002G190500 Sobic007G209300--Sobic002G190500 Sobic003G025900 Sobic003G025900 Sobic007G209300--Sobic003G025900 Sobic005G019800 Sobic005G019800 Sobic007G209300--Sobic005G019800 Sobic004G060900 Sobic004G060900 Sobic007G209300--Sobic004G060900 Sobic007G163901 Sobic007G163901 Sobic007G209300--Sobic007G163901 Sobic003G241050 Sobic003G241050 Sobic007G209300--Sobic003G241050 Sobic007G216201--Sobic001G520400 Sobic007G216201--Sobic002G190500 Sobic002G324000 Sobic002G324000 Sobic007G216201--Sobic002G324000 Sobic004G050200 Sobic004G050200 Sobic007G216201--Sobic004G050200 Sobic004G113300 Sobic004G113300 Sobic007G216201--Sobic004G113300 Sobic004G345800 Sobic004G345800 Sobic007G216201--Sobic004G345800 Sobic003G184900 Sobic003G184900 Sobic007G216201--Sobic003G184900 Sobic008G079300 Sobic008G079300 Sobic007G216201--Sobic008G079300 Sobic007G216201--Sobic004G060900 Sobic001G520400--Sobic007G216201 Sobic003G029800 Sobic003G029800 Sobic001G520400--Sobic003G029800 Sobic004G087500 Sobic004G087500 Sobic001G520400--Sobic004G087500 Sobic001G520400--Sobic002G324000 Sobic001G520400--Sobic004G060900 Sobic001G520400--Sobic002G190500 Sobic001G520400--Sobic003G184900 Sobic001G520400--Sobic008G079300 Sobic008G182700 Sobic008G182700 Sobic001G520400--Sobic008G182700 Sobic009G120200 Sobic009G120200 Sobic003G276750--Sobic009G120200 Sobic006G063700 Sobic006G063700 Sobic003G276750--Sobic006G063700 Sobic008G164800 Sobic008G164800 Sobic003G276750--Sobic008G164800 Sobic001G468100 Sobic001G468100 Sobic003G276750--Sobic001G468100 Sobic001G274800 Sobic001G274800 Sobic003G276750--Sobic001G274800 Sobic002G058500 Sobic002G058500 Sobic003G276750--Sobic002G058500 Sobic006G181300 Sobic006G181300 Sobic003G276750--Sobic006G181300 Sobic003G338300 Sobic003G338300 Sobic003G276750--Sobic003G338300 Sobic003G276750--Sobic007G209300 Sobic002G190500--Sobic002G324000 Sobic002G190500--Sobic004G113300 Sobic005G130400 Sobic005G130400 Sobic002G190500--Sobic005G130400 Sobic002G190500--Sobic004G050200 Sobic002G190500--Sobic003G184900 Sobic002G190500--Sobic004G345800 Sobic004G321800 Sobic004G321800 Sobic002G190500--Sobic004G321800 Sobic002G190500--Sobic007G216201 Sobic002G190500--Sobic008G079300 Sobic003G025900--Sobic005G019800 Sobic001G227800 Sobic001G227800 Sobic003G025900--Sobic001G227800 Sobic003G025900--Sobic002G058500 Sobic006G127100 Sobic006G127100 Sobic003G025900--Sobic006G127100 Sobic002G215700 Sobic002G215700 Sobic003G025900--Sobic002G215700 Sobic001G321000 Sobic001G321000 Sobic003G025900--Sobic001G321000 Sobic004G320600 Sobic004G320600 Sobic003G025900--Sobic004G320600 Sobic006G226400 Sobic006G226400 Sobic003G025900--Sobic006G226400 Sobic003G025900--Sobic004G321800 Sobic005G019800--Sobic003G025900 Sobic005G019800--Sobic002G058500 Sobic006G139000 Sobic006G139000 Sobic005G019800--Sobic006G139000 Sobic005G019800--Sobic001G227800 Sobic001G280000 Sobic001G280000 Sobic005G019800--Sobic001G280000 Sobic003G272600 Sobic003G272600 Sobic005G019800--Sobic003G272600 Sobic001G395700 Sobic001G395700 Sobic005G019800--Sobic001G395700 Sobic003G356400 Sobic003G356400 Sobic005G019800--Sobic003G356400 Sobic005G019800--Sobic002G215700 Sobic001G474500 Sobic001G474500 Sobic004G060900--Sobic001G474500 Sobic004G060900--Sobic004G321800 Sobic007G068100 Sobic007G068100 Sobic004G060900--Sobic007G068100 Sobic003G148800 Sobic003G148800 Sobic004G060900--Sobic003G148800 Sobic001G325200 Sobic001G325200 Sobic004G060900--Sobic001G325200 Sobic004G060900--Sobic002G324000 Sobic009G229800 Sobic009G229800 Sobic004G060900--Sobic009G229800 Sobic003G428400 Sobic003G428400 Sobic004G060900--Sobic003G428400 Sobic009G057300 Sobic009G057300 Sobic004G060900--Sobic009G057300 Sobic002G084600 Sobic002G084600 Sobic007G163901--Sobic002G084600 Sobic003G111200 Sobic003G111200 Sobic007G163901--Sobic003G111200 Sobic007G163901--Sobic006G226400 Sobic003G061400 Sobic003G061400 Sobic007G163901--Sobic003G061400 Sobic010G135900 Sobic010G135900 Sobic007G163901--Sobic010G135900 Sobic005G169400 Sobic005G169400 Sobic007G163901--Sobic005G169400 Sobic009G114000 Sobic009G114000 Sobic007G163901--Sobic009G114000 Sobic007G163901--Sobic002G190500 Sobic007G163901--Sobic004G320600 Sobic003G241050--Sobic003G148800 Sobic003G241050--Sobic004G321800 Sobic003G241050--Sobic001G325200 Sobic003G241050--Sobic007G068100 Sobic003G105800 Sobic003G105800 Sobic003G241050--Sobic003G105800 Sobic003G087200 Sobic003G087200 Sobic003G241050--Sobic003G087200 Sobic002G304000 Sobic002G304000 Sobic003G241050--Sobic002G304000 Sobic009G226300 Sobic009G226300 Sobic003G241050--Sobic009G226300 Sobic009G054500 Sobic009G054500 Sobic003G241050--Sobic009G054500
Octagon: transcription factors


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