Gene annotation
Transcriptome id Sobic.007G225200.6,Sobic.007G225200.4,Sobic.007G225200.7,Sobic.007G225200.1,Sobic.007G225200.5,Sobic.007G225200.3,Sobic.007G225200.2
Synonym Sb07g029030
Functional annotation 2-nitropropane dioxygenase family, putative, expressed
UniProt A0A1Z5RCB2 , A0A1B6PJ83
Pfam PF01070 PF03060 PF03060
Panther DB PTHR32332 PTHR32332:SF20
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0018580; nitronate monooxygenase activity GO:0016491oxidoreductase activity GO:0018580nitronate monooxygenase activity


Orthologs (automatic annotation)
TAIR AT5G64250 : Aldolase-type TIM barrel family protein
RAP-DB (Rice) LOC_Os08g37874.1 : 2-nitropropane dioxygenase family, putative, expressed
MaizeGDB (Corn) Zm00025a004953
Brachypodium KQJ98736
Barley HORVU1Hr1G057460.3 , HORVU1Hr1G057460.5
Wheat TraesCS1D02G238900 , TraesCS1A02G238700 , TraesCS1A02G235800
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.007G225200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G058400 disease resistance protein RPM1, putative, expressed K13457: RPM1, disease resistance protein RPM1
2 Sobic.005G013000 OsFBX181 - F-box domain containing protein, expressed -
3 Sobic.003G267800 ranBP1 domain containing protein, expressed K15304: Ran-binding protein 3
4 Sobic.009G135800 CUE domain containing protein, expressed -
5 Sobic.009G040700 "OsPPKL2(Ortholog in rice:Zhan et al., 2012)"(PubMedID : 31659919)@serine/threonine protein phosphatase, putative, expressed K01090: protein phosphatase
6 Sobic.003G258900 ZOS3-17 - C2H2 zinc finger protein, expressed K12827: SF3A3, SAP61, splicing factor 3A subunit 3
7 Sobic.001G017600 protein of unknown function containing protein, expressed -
8 Sobic.002G396000 XPA-binding protein 2, putative, expressed K12867: SYF1, pre-mRNA-splicing factor SYF1
9 Sobic.002G158700 TATA binding protein-associated factor, putative, expressed K03131: transcription initiation factor TFIID subunit 6
10 Sobic.003G239900 ketol-acid reductoisomerase, chloroplast precursor, putative, expressed K00053: ketol-acid reductoisomerase
11 Sobic.008G024600 expressed protein -
12 Sobic.006G245400 -(PubMedID : 34525227)@NADPH reductase, putative, expressed K00327: NADPH-ferrihemoprotein reductase
13 Sobic.001G498200 YT521-B-like family domain containing protein, expressed -
14 Sobic.010G276800 pollen signalling protein with adenylyl cyclase activity, putative, expressed -
15 Sobic.004G270000 coatomer subunit delta, putative, expressed -
16 Sobic.007G071950 - -
17 Sobic.002G179900 ABC transporter, ATP-binding protein, putative, expressed -
18 Sobic.001G544200 endonuclease, putative, expressed K10848: ERCC4, DNA excision repair protein ERCC-4
19 Sobic.008G117200 RING finger and CHY zinc finger domain-containing protein 1, putative, expressed K10144: RCHY1, RING finger and CHY zinc finger domain-containing protein 1
20 Sobic.003G176400 - -


Gene co-expression network
sample Sobic007G225200 Sobic007G225200 Sobic002G058400 Sobic002G058400 Sobic007G225200--Sobic002G058400 Sobic005G013000 Sobic005G013000 Sobic007G225200--Sobic005G013000 Sobic003G267800 Sobic003G267800 Sobic007G225200--Sobic003G267800 Sobic009G135800 Sobic009G135800 Sobic007G225200--Sobic009G135800 Sobic009G040700 Sobic009G040700 Sobic007G225200--Sobic009G040700 Sobic003G258900 Sobic003G258900 Sobic007G225200--Sobic003G258900 Sobic001G017600 Sobic001G017600 Sobic007G225200--Sobic001G017600 Sobic002G396000 Sobic002G396000 Sobic007G225200--Sobic002G396000 Sobic002G158700 Sobic002G158700 Sobic007G225200--Sobic002G158700 Sobic002G058400--Sobic003G267800 Sobic001G504200 Sobic001G504200 Sobic002G058400--Sobic001G504200 Sobic005G133500 Sobic005G133500 Sobic002G058400--Sobic005G133500 Sobic002G058400--Sobic009G135800 Sobic004G223600 Sobic004G223600 Sobic002G058400--Sobic004G223600 Sobic004G246100 Sobic004G246100 Sobic002G058400--Sobic004G246100 Sobic006G245400 Sobic006G245400 Sobic002G058400--Sobic006G245400 Sobic002G058400--Sobic002G396000 Sobic001G509500 Sobic001G509500 Sobic002G058400--Sobic001G509500 Sobic005G013000--Sobic002G158700 Sobic006G128900 Sobic006G128900 Sobic005G013000--Sobic006G128900 Sobic008G024600 Sobic008G024600 Sobic005G013000--Sobic008G024600 Sobic005G013000--Sobic009G040700 Sobic001G544200 Sobic001G544200 Sobic005G013000--Sobic001G544200 Sobic001G464200 Sobic001G464200 Sobic005G013000--Sobic001G464200 Sobic001G111900 Sobic001G111900 Sobic005G013000--Sobic001G111900 Sobic008G078100 Sobic008G078100 Sobic005G013000--Sobic008G078100 Sobic003G445400 Sobic003G445400 Sobic005G013000--Sobic003G445400 Sobic003G267800--Sobic005G133500 Sobic003G267800--Sobic003G258900 Sobic003G267800--Sobic002G058400 Sobic003G239900 Sobic003G239900 Sobic003G267800--Sobic003G239900 Sobic009G175900 Sobic009G175900 Sobic003G267800--Sobic009G175900 Sobic003G267800--Sobic002G158700 Sobic003G440700 Sobic003G440700 Sobic003G267800--Sobic003G440700 Sobic006G217200 Sobic006G217200 Sobic003G267800--Sobic006G217200 Sobic003G267800--Sobic002G396000 Sobic004G031700 Sobic004G031700 Sobic009G135800--Sobic004G031700 Sobic002G340100 Sobic002G340100 Sobic009G135800--Sobic002G340100 Sobic009G135800--Sobic008G024600 Sobic009G135800--Sobic006G128900 Sobic002G053000 Sobic002G053000 Sobic009G135800--Sobic002G053000 Sobic009G135800--Sobic003G445400 Sobic009G135800--Sobic002G158700 Sobic006G173100 Sobic006G173100 Sobic009G135800--Sobic006G173100 Sobic009G000500 Sobic009G000500 Sobic009G135800--Sobic009G000500 Sobic001G094000 Sobic001G094000 Sobic009G040700--Sobic001G094000 Sobic003G187400 Sobic003G187400 Sobic009G040700--Sobic003G187400 Sobic005G149500 Sobic005G149500 Sobic009G040700--Sobic005G149500 Sobic007G011400 Sobic007G011400 Sobic009G040700--Sobic007G011400 Sobic002G157300 Sobic002G157300 Sobic009G040700--Sobic002G157300 Sobic001G477800 Sobic001G477800 Sobic009G040700--Sobic001G477800 Sobic006G145000 Sobic006G145000 Sobic009G040700--Sobic006G145000 Sobic004G196700 Sobic004G196700 Sobic009G040700--Sobic004G196700 Sobic009G040700--Sobic008G078100 Sobic003G258900--Sobic002G396000 Sobic003G258900--Sobic002G158700 Sobic003G258900--Sobic003G267800 Sobic006G102100 Sobic006G102100 Sobic003G258900--Sobic006G102100 Sobic001G081000 Sobic001G081000 Sobic003G258900--Sobic001G081000 Sobic006G226300 Sobic006G226300 Sobic003G258900--Sobic006G226300 Sobic003G442000 Sobic003G442000 Sobic003G258900--Sobic003G442000 Sobic009G225200 Sobic009G225200 Sobic003G258900--Sobic009G225200 Sobic009G046700 Sobic009G046700 Sobic003G258900--Sobic009G046700 Sobic008G133400 Sobic008G133400 Sobic001G017600--Sobic008G133400 Sobic008G083000 Sobic008G083000 Sobic001G017600--Sobic008G083000 Sobic007G061700 Sobic007G061700 Sobic001G017600--Sobic007G061700 Sobic005G182200 Sobic005G182200 Sobic001G017600--Sobic005G182200 Sobic009G257800 Sobic009G257800 Sobic001G017600--Sobic009G257800 Sobic001G017600--Sobic003G442000 Sobic010G256800 Sobic010G256800 Sobic001G017600--Sobic010G256800 Sobic001G498200 Sobic001G498200 Sobic001G017600--Sobic001G498200 Sobic001G017600--Sobic002G158700 Sobic002G396000--Sobic002G158700 Sobic002G396000--Sobic006G128900 Sobic007G096000 Sobic007G096000 Sobic002G396000--Sobic007G096000 Sobic003G280800 Sobic003G280800 Sobic002G396000--Sobic003G280800 Sobic001G511500 Sobic001G511500 Sobic002G396000--Sobic001G511500 Sobic009G210500 Sobic009G210500 Sobic002G396000--Sobic009G210500 Sobic004G018300 Sobic004G018300 Sobic002G396000--Sobic004G018300 Sobic008G131000 Sobic008G131000 Sobic002G396000--Sobic008G131000 Sobic001G090400 Sobic001G090400 Sobic002G396000--Sobic001G090400 Sobic003G401000 Sobic003G401000 Sobic002G158700--Sobic003G401000 Sobic002G158700--Sobic001G464200 Sobic001G167200 Sobic001G167200 Sobic002G158700--Sobic001G167200 Sobic002G158700--Sobic004G031700 Sobic002G158700--Sobic003G445400 Sobic007G000800 Sobic007G000800 Sobic002G158700--Sobic007G000800 Sobic002G158700--Sobic007G061700 Sobic008G149800 Sobic008G149800 Sobic002G158700--Sobic008G149800 Sobic002G158700--Sobic002G396000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.