Gene annotation
Transcriptome id Sobic.008G010800.1
Synonym LACS6, ATLACS6, Sb08g001010
Functional annotation acyl-CoA synthetase protein, putative, expressed
UniProt C5YQ78
Pfam PF00501
Panther DB PTHR24096 PTHR24096:SF221
NCBI CDD -
KEGG Orthology K01897; ACSL, long-chain acyl-CoA synthetase
Gene Ontology GO:0008152; metabolic process GO:0003824catalytic activity


Orthologs (automatic annotation)
TAIR AT5G27600 : long-chain acyl-CoA synthetase 7
RAP-DB (Rice) LOC_Os12g04990.1 : acyl-CoA synthetase protein, putative, expressed
MaizeGDB (Corn) Zm00025a053674 , Zm00025a033453
Brachypodium KQJ89589 , KQJ92332
Barley HORVU5Hr1G040740.12 , HORVU5Hr1G040740.13 , HORVU5Hr1G040740.10 , HORVU5Hr1G040740.11 , HORVU5Hr1G040740.16 , HORVU5Hr1G040740.17 , HORVU5Hr1G040740.14 , HORVU5Hr1G040740.18 , HORVU5Hr1G040740.19 , HORVU4Hr1G025820.15 , HORVU4Hr1G025820.14 , HORVU4Hr1G025820.17 , HORVU4Hr1G025820.16 , HORVU4Hr1G025820.11 , HORVU4Hr1G025820.10 , HORVU4Hr1G025820.13 , HORVU4Hr1G025820.12 , HORVU5Hr1G040740.23 , HORVU5Hr1G040740.22 , HORVU5Hr1G040740.21 , HORVU5Hr1G040740.20 , HORVU5Hr1G040740.25 , HORVU5Hr1G040740.24 , HORVU5Hr1G040740.29 , HORVU5Hr1G040740.28 , HORVU5Hr1G040740.8 , HORVU5Hr1G040740.9 , HORVU5Hr1G040740.1 , HORVU5Hr1G040740.2 , HORVU5Hr1G040740.3 , HORVU5Hr1G040740.4 , HORVU5Hr1G040740.5 , HORVU5Hr1G040740.6 , HORVU5Hr1G040740.7 , HORVU5Hr1G040740.30 , HORVU5Hr1G040740.27 , HORVU5Hr1G040740.26 , HORVU4Hr1G025820.9 , HORVU4Hr1G025820.8 , HORVU4Hr1G025820.1 , HORVU4Hr1G025820.3 , HORVU4Hr1G025820.2 , HORVU4Hr1G025820.5 , HORVU4Hr1G025820.4 , HORVU4Hr1G025820.7 , HORVU4Hr1G025820.6
Wheat TraesCS5B02G131800 , TraesCS5B02G131800 , TraesCS5B02G131800 , TraesCS5B02G131800 , TraesCS4A02G184900 , TraesCS4A02G184900 , TraesCS4B02G133700 , TraesCS4B02G133700 , TraesCS4B02G133700 , TraesCS4B02G133700 , TraesCS5D02G141300 , TraesCS5A02G133200 , TraesCS5A02G133200 , TraesCS5A02G133200 , TraesCS5A02G133200 , TraesCS5A02G133200 , TraesCS5A02G133200 , TraesCS4D02G128700 , TraesCS4D02G128700 , TraesCS4D02G128700 , TraesCS4D02G128700 , TraesCS4D02G128700
Populus -


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cDNA sequences
Sobic.008G010800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G138000 FAD binding domain of DNA photolyase domain containing protein, expressed K12119: cryptochrome 2
2 Sobic.010G139600 STE_PAK_Ste20_STLK.5 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K08835: OXSR1, serine/threonine-protein kinase OSR1/STK39
3 Sobic.002G430000 expressed protein K08518: STXBP5, syntaxin-binding protein 5
4 Sobic.001G390800 transcription factor HBP-1b, putative, expressed K14431: transcription factor TGA
5 Sobic.002G111000 peptidase, putative, expressed -
6 Sobic.009G133500 expressed protein -
7 Sobic.007G163100 expressed protein K14972: PAXIP1, PAX-interacting protein 1
8 Sobic.006G082400 expressed protein -
9 Sobic.004G113400 cyclic nucleotide-gated ion channel 1, putative, expressed K05391: cyclic nucleotide gated channel, plant
10 Sobic.004G296400 amino acid permease, putative, expressed K03294: basic amino acid/polyamine antiporter, APA family
11 Sobic.007G004500 phosphatidylinositol-4-phosphate 5-Kinase, putative, expressed K00921: PIKFYVE, 1-phosphatidylinositol-3-phosphate 5-kinase
12 Sobic.006G225900 expressed protein -
13 Sobic.003G365300 sorting nexin 1, putative, expressed K17917: sorting nexin-1/2
14 Sobic.003G195000 OsFtsH5 FtsH protease, homologue of AtFtsH4, expressed K08955: ATP-dependent metalloprotease
15 Sobic.004G136300 Sec1 family transport protein, putative, expressed K15292: STXBP1, syntaxin-binding protein 1
16 Sobic.003G273600 CK1_CaseinKinase_1.3 - CK1 includes the casein kinase 1 kinases, expressed K02218: CSNK1, casein kinase 1
17 Sobic.007G075400 expressed protein -
18 Sobic.003G233600 aspartyl aminopeptidase, putative, expressed K01267: aspartyl aminopeptidase
19 Sobic.006G265200 zinc finger, RING-type, putative, expressed K17592: sacsin
20 Sobic.009G139900 rab GDP dissociation inhibitor alpha, putative, expressed K17255: Rab GDP dissociation inhibitor


Gene co-expression network
sample Sobic008G010800 Sobic008G010800 Sobic010G138000 Sobic010G138000 Sobic008G010800--Sobic010G138000 Sobic010G139600 Sobic010G139600 Sobic008G010800--Sobic010G139600 Sobic002G430000 Sobic002G430000 Sobic008G010800--Sobic002G430000 Sobic001G390800 Sobic001G390800 Sobic008G010800--Sobic001G390800 Sobic002G111000 Sobic002G111000 Sobic008G010800--Sobic002G111000 Sobic009G133500 Sobic009G133500 Sobic008G010800--Sobic009G133500 Sobic007G163100 Sobic007G163100 Sobic008G010800--Sobic007G163100 Sobic006G082400 Sobic006G082400 Sobic008G010800--Sobic006G082400 Sobic004G113400 Sobic004G113400 Sobic008G010800--Sobic004G113400 Sobic010G175400 Sobic010G175400 Sobic010G138000--Sobic010G175400 Sobic001G194200 Sobic001G194200 Sobic010G138000--Sobic001G194200 Sobic007G103100 Sobic007G103100 Sobic010G138000--Sobic007G103100 Sobic004G136300 Sobic004G136300 Sobic010G138000--Sobic004G136300 Sobic002G276100 Sobic002G276100 Sobic010G138000--Sobic002G276100 Sobic001G002000 Sobic001G002000 Sobic010G138000--Sobic001G002000 Sobic004G291900 Sobic004G291900 Sobic010G138000--Sobic004G291900 Sobic001G268200 Sobic001G268200 Sobic010G138000--Sobic001G268200 Sobic002G275700 Sobic002G275700 Sobic010G138000--Sobic002G275700 Sobic007G075400 Sobic007G075400 Sobic010G139600--Sobic007G075400 Sobic002G146300 Sobic002G146300 Sobic010G139600--Sobic002G146300 Sobic003G205200 Sobic003G205200 Sobic010G139600--Sobic003G205200 Sobic008G098900 Sobic008G098900 Sobic010G139600--Sobic008G098900 Sobic003G313500 Sobic003G313500 Sobic010G139600--Sobic003G313500 Sobic005G001000 Sobic005G001000 Sobic010G139600--Sobic005G001000 Sobic010G139600--Sobic001G194200 Sobic003G422500 Sobic003G422500 Sobic010G139600--Sobic003G422500 Sobic001G370900 Sobic001G370900 Sobic010G139600--Sobic001G370900 Sobic001G207400 Sobic001G207400 Sobic002G430000--Sobic001G207400 Sobic001G117200 Sobic001G117200 Sobic002G430000--Sobic001G117200 Sobic004G355000 Sobic004G355000 Sobic002G430000--Sobic004G355000 Sobic002G430000--Sobic008G098900 Sobic001G016700 Sobic001G016700 Sobic002G430000--Sobic001G016700 Sobic002G430000--Sobic004G113400 Sobic002G430000--Sobic010G139600 Sobic008G092600 Sobic008G092600 Sobic002G430000--Sobic008G092600 Sobic003G110000 Sobic003G110000 Sobic002G430000--Sobic003G110000 Sobic001G390800--Sobic001G268200 Sobic001G121200 Sobic001G121200 Sobic001G390800--Sobic001G121200 Sobic001G390800--Sobic003G313500 Sobic010G205800 Sobic010G205800 Sobic001G390800--Sobic010G205800 Sobic001G085300 Sobic001G085300 Sobic001G390800--Sobic001G085300 Sobic010G147100 Sobic010G147100 Sobic001G390800--Sobic010G147100 Sobic001G390800--Sobic007G075400 Sobic001G390800--Sobic010G139600 Sobic001G050200 Sobic001G050200 Sobic001G390800--Sobic001G050200 Sobic002G111000--Sobic001G207400 Sobic002G111000--Sobic001G390800 Sobic002G111000--Sobic001G016700 Sobic002G111000--Sobic001G121200 Sobic003G365300 Sobic003G365300 Sobic002G111000--Sobic003G365300 Sobic002G111000--Sobic002G430000 Sobic002G111000--Sobic010G139600 Sobic002G111000--Sobic010G147100 Sobic001G137100 Sobic001G137100 Sobic002G111000--Sobic001G137100 Sobic004G065000 Sobic004G065000 Sobic009G133500--Sobic004G065000 Sobic006G204900 Sobic006G204900 Sobic009G133500--Sobic006G204900 Sobic009G133500--Sobic010G139600 Sobic002G147600 Sobic002G147600 Sobic009G133500--Sobic002G147600 Sobic009G133500--Sobic004G136300 Sobic009G133500--Sobic008G092600 Sobic004G329400 Sobic004G329400 Sobic009G133500--Sobic004G329400 Sobic007G004500 Sobic007G004500 Sobic009G133500--Sobic007G004500 Sobic009G133500--Sobic007G075400 Sobic003G408600 Sobic003G408600 Sobic007G163100--Sobic003G408600 Sobic008G118200 Sobic008G118200 Sobic007G163100--Sobic008G118200 Sobic002G045600 Sobic002G045600 Sobic007G163100--Sobic002G045600 Sobic007G163100--Sobic001G117200 Sobic003G072200 Sobic003G072200 Sobic007G163100--Sobic003G072200 Sobic007G163100--Sobic003G422500 Sobic001G540400 Sobic001G540400 Sobic007G163100--Sobic001G540400 Sobic001G289800 Sobic001G289800 Sobic007G163100--Sobic001G289800 Sobic007G163100--Sobic004G113400 Sobic006G082400--Sobic003G365300 Sobic006G082400--Sobic001G390800 Sobic006G082400--Sobic010G205800 Sobic006G082400--Sobic002G430000 Sobic006G082400--Sobic007G075400 Sobic006G082400--Sobic003G422500 Sobic008G132600 Sobic008G132600 Sobic006G082400--Sobic008G132600 Sobic007G133700 Sobic007G133700 Sobic006G082400--Sobic007G133700 Sobic002G270500 Sobic002G270500 Sobic006G082400--Sobic002G270500 Sobic009G010600 Sobic009G010600 Sobic004G113400--Sobic009G010600 Sobic004G113400--Sobic003G408600 Sobic004G113400--Sobic004G329400 Sobic001G058700 Sobic001G058700 Sobic004G113400--Sobic001G058700 Sobic008G099800 Sobic008G099800 Sobic004G113400--Sobic008G099800 Sobic001G178700 Sobic001G178700 Sobic004G113400--Sobic001G178700 Sobic004G113400--Sobic001G117200 Sobic001G534800 Sobic001G534800 Sobic004G113400--Sobic001G534800 Sobic004G113400--Sobic002G430000
Octagon: transcription factors


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