Gene annotation
Transcriptome id Sobic.008G040000.1
Synonym Sb08g003450
Functional annotation PPR repeat containing protein, expressed
UniProt A0A1B6PB71
Pfam PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF446
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G65560 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os06g47570.1 : PPR repeat containing protein, expressed
MaizeGDB (Corn) Zm00025a029050 , Zm00025a022741
Brachypodium KQK17266
Barley HORVU7Hr1G099910.15 , HORVU7Hr1G099910.14 , HORVU7Hr1G099910.17 , HORVU7Hr1G099910.16 , HORVU7Hr1G099910.11 , HORVU7Hr1G099910.10 , HORVU7Hr1G099910.13 , HORVU7Hr1G099910.12 , HORVU7Hr1G099910.18 , HORVU7Hr1G099910.1 , HORVU7Hr1G099910.3 , HORVU7Hr1G099910.2 , HORVU7Hr1G099910.5 , HORVU7Hr1G099910.4 , HORVU7Hr1G099910.7 , HORVU7Hr1G099910.6 , HORVU7Hr1G099910.9 , HORVU7Hr1G099910.8
Wheat TraesCS4B02G343300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G265300 endonuclease, putative, expressed -
2 Sobic.004G352600 expressed protein -
3 Sobic.010G232200 - -
4 Sobic.009G038600 GA20663-PA, putative, expressed -
5 Sobic.001G359900 expressed protein -
6 Sobic.004G355200 jmjC domain containing protein, expressed K15601: [histone H3]-dimethyl-L-lysine9 demethylase
7 Sobic.005G005000 cysteine-rich receptor-like protein kinase 4 precursor, putative, expressed K04730: interleukin-1 receptor-associated kinase 1
8 Sobic.003G395600 CorA-like magnesium transporter protein, putative, expressed K16075: MRS2, magnesium transporter
9 Sobic.005G110523 - -
10 Sobic.003G301400 DNA-directed polymerase, putative, expressed K03509: DNA polymerase eta
11 Sobic.004G262000 RNA recognition motif containing protein, putative, expressed -
12 Sobic.007G005200 PHD-finger domain containing protein, expressed -
13 Sobic.002G430400 - -
14 Sobic.002G197300 MSH-like DNA mismatch repair protein, putative, expressed K08737: DNA mismatch repair protein MSH6
15 Sobic.007G029200 myosin heavy chain-related, putative, expressed -
16 Sobic.010G063433 - -
17 Sobic.009G184900 OsDegp8 - Putative Deg protease homologue, expressed -
18 Sobic.002G072000 resistance protein, putative, expressed -
19 Sobic.001G038800 SCAR-like protein 1, putative, expressed -
20 Sobic.003G030500 - K12823: DDX5, ATP-dependent RNA helicase DDX5/DBP2


Gene co-expression network
sample Sobic008G040000 Sobic008G040000 Sobic006G265300 Sobic006G265300 Sobic008G040000--Sobic006G265300 Sobic004G352600 Sobic004G352600 Sobic008G040000--Sobic004G352600 Sobic010G232200 Sobic010G232200 Sobic008G040000--Sobic010G232200 Sobic009G038600 Sobic009G038600 Sobic008G040000--Sobic009G038600 Sobic001G359900 Sobic001G359900 Sobic008G040000--Sobic001G359900 Sobic004G355200 Sobic004G355200 Sobic008G040000--Sobic004G355200 Sobic005G005000 Sobic005G005000 Sobic008G040000--Sobic005G005000 Sobic003G395600 Sobic003G395600 Sobic008G040000--Sobic003G395600 Sobic005G110523 Sobic005G110523 Sobic008G040000--Sobic005G110523 Sobic001G016100 Sobic001G016100 Sobic006G265300--Sobic001G016100 Sobic010G002000 Sobic010G002000 Sobic006G265300--Sobic010G002000 Sobic006G204600 Sobic006G204600 Sobic006G265300--Sobic006G204600 Sobic010G279100 Sobic010G279100 Sobic006G265300--Sobic010G279100 Sobic004G157600 Sobic004G157600 Sobic006G265300--Sobic004G157600 Sobic006G270200 Sobic006G270200 Sobic006G265300--Sobic006G270200 Sobic004G190900 Sobic004G190900 Sobic006G265300--Sobic004G190900 Sobic001G028100 Sobic001G028100 Sobic006G265300--Sobic001G028100 Sobic001G054100 Sobic001G054100 Sobic006G265300--Sobic001G054100 Sobic002G051600 Sobic002G051600 Sobic004G352600--Sobic002G051600 Sobic001G090800 Sobic001G090800 Sobic004G352600--Sobic001G090800 Sobic004G352600--Sobic008G040000 Sobic004G151000 Sobic004G151000 Sobic004G352600--Sobic004G151000 Sobic004G027300 Sobic004G027300 Sobic004G352600--Sobic004G027300 Sobic001G408500 Sobic001G408500 Sobic004G352600--Sobic001G408500 Sobic002G409700 Sobic002G409700 Sobic004G352600--Sobic002G409700 Sobic007G029200 Sobic007G029200 Sobic004G352600--Sobic007G029200 Sobic001G453500 Sobic001G453500 Sobic004G352600--Sobic001G453500 Sobic006G079400 Sobic006G079400 Sobic010G232200--Sobic006G079400 Sobic004G258700 Sobic004G258700 Sobic010G232200--Sobic004G258700 Sobic002G318700 Sobic002G318700 Sobic010G232200--Sobic002G318700 Sobic008G028700 Sobic008G028700 Sobic010G232200--Sobic008G028700 Sobic007G161000 Sobic007G161000 Sobic010G232200--Sobic007G161000 Sobic004G040350 Sobic004G040350 Sobic010G232200--Sobic004G040350 Sobic002G145101 Sobic002G145101 Sobic010G232200--Sobic002G145101 Sobic007G074600 Sobic007G074600 Sobic010G232200--Sobic007G074600 Sobic004G208900 Sobic004G208900 Sobic010G232200--Sobic004G208900 Sobic006G223200 Sobic006G223200 Sobic009G038600--Sobic006G223200 Sobic006G138600 Sobic006G138600 Sobic009G038600--Sobic006G138600 Sobic002G430400 Sobic002G430400 Sobic009G038600--Sobic002G430400 Sobic009G037000 Sobic009G037000 Sobic009G038600--Sobic009G037000 Sobic010G038600 Sobic010G038600 Sobic009G038600--Sobic010G038600 Sobic003G077600 Sobic003G077600 Sobic009G038600--Sobic003G077600 Sobic005G008500 Sobic005G008500 Sobic009G038600--Sobic005G008500 Sobic009G184800 Sobic009G184800 Sobic009G038600--Sobic009G184800 Sobic009G038600--Sobic008G040000 Sobic010G277500 Sobic010G277500 Sobic001G359900--Sobic010G277500 Sobic003G161000 Sobic003G161000 Sobic001G359900--Sobic003G161000 Sobic003G332800 Sobic003G332800 Sobic001G359900--Sobic003G332800 Sobic010G129200 Sobic010G129200 Sobic001G359900--Sobic010G129200 Sobic003G176500 Sobic003G176500 Sobic001G359900--Sobic003G176500 Sobic005G013200 Sobic005G013200 Sobic001G359900--Sobic005G013200 Sobic001G359900--Sobic006G079400 Sobic004G299000 Sobic004G299000 Sobic001G359900--Sobic004G299000 Sobic003G174475 Sobic003G174475 Sobic001G359900--Sobic003G174475 Sobic001G134300 Sobic001G134300 Sobic004G355200--Sobic001G134300 Sobic004G107200 Sobic004G107200 Sobic004G355200--Sobic004G107200 Sobic004G355200--Sobic001G090800 Sobic004G355200--Sobic007G029200 Sobic001G352900 Sobic001G352900 Sobic004G355200--Sobic001G352900 Sobic010G065300 Sobic010G065300 Sobic004G355200--Sobic010G065300 Sobic010G001100 Sobic010G001100 Sobic004G355200--Sobic010G001100 Sobic006G210000 Sobic006G210000 Sobic004G355200--Sobic006G210000 Sobic009G142000 Sobic009G142000 Sobic004G355200--Sobic009G142000 Sobic005G005000--Sobic005G110523 Sobic009G004700 Sobic009G004700 Sobic005G005000--Sobic009G004700 Sobic006G196000 Sobic006G196000 Sobic005G005000--Sobic006G196000 Sobic009G110366 Sobic009G110366 Sobic005G005000--Sobic009G110366 Sobic009G113600 Sobic009G113600 Sobic005G005000--Sobic009G113600 Sobic002G376900 Sobic002G376900 Sobic005G005000--Sobic002G376900 Sobic007G073400 Sobic007G073400 Sobic005G005000--Sobic007G073400 Sobic006G145000 Sobic006G145000 Sobic005G005000--Sobic006G145000 Sobic009G078500 Sobic009G078500 Sobic005G005000--Sobic009G078500 Sobic003G301400 Sobic003G301400 Sobic003G395600--Sobic003G301400 Sobic002G284600 Sobic002G284600 Sobic003G395600--Sobic002G284600 Sobic008G083600 Sobic008G083600 Sobic003G395600--Sobic008G083600 Sobic001G215700 Sobic001G215700 Sobic003G395600--Sobic001G215700 Sobic007G177700 Sobic007G177700 Sobic003G395600--Sobic007G177700 Sobic003G009501 Sobic003G009501 Sobic003G395600--Sobic003G009501 Sobic010G056100 Sobic010G056100 Sobic003G395600--Sobic010G056100 Sobic010G195100 Sobic010G195100 Sobic003G395600--Sobic010G195100 Sobic004G128100 Sobic004G128100 Sobic003G395600--Sobic004G128100 Sobic005G110523--Sobic009G004700 Sobic006G009400 Sobic006G009400 Sobic005G110523--Sobic006G009400 Sobic005G110523--Sobic005G005000 Sobic001G477800 Sobic001G477800 Sobic005G110523--Sobic001G477800 Sobic001G464200 Sobic001G464200 Sobic005G110523--Sobic001G464200 Sobic007G059300 Sobic007G059300 Sobic005G110523--Sobic007G059300 Sobic004G169501 Sobic004G169501 Sobic005G110523--Sobic004G169501 Sobic003G089650 Sobic003G089650 Sobic005G110523--Sobic003G089650 Sobic005G110523--Sobic009G113600
Octagon: transcription factors


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