Gene annotation
Transcriptome id Sobic.004G352600.1,Sobic.004G352600.2
Synonym Sb04g037930
Functional annotation expressed protein
UniProt A0A1Z5RQP6 , C5XWL9
Pfam PF04851 PF04851 PF00271
Panther DB PTHR24031 PTHR24031:SF324
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016787; hydrolase activity GO:0005524ATP binding GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT2G07750 : DEA(D/H)-box RNA helicase family protein
RAP-DB (Rice) LOC_Os02g57980.1 : DEAD/DEAH box helicase, putative, expressed
MaizeGDB (Corn) Zm00025a034920 , Zm00025a022646
Brachypodium KQK01479
Barley HORVU6Hr1G093300.31 , HORVU6Hr1G093300.30 , HORVU6Hr1G093300.33 , HORVU6Hr1G093300.32 , HORVU6Hr1G093300.25 , HORVU6Hr1G093300.9 , HORVU6Hr1G093300.7 , HORVU6Hr1G093300.22 , HORVU6Hr1G093300.23 , HORVU6Hr1G093300.20 , HORVU6Hr1G093300.21 , HORVU6Hr1G093300.26 , HORVU6Hr1G093300.27 , HORVU6Hr1G093300.24 , HORVU6Hr1G093300.28 , HORVU6Hr1G093300.29 , HORVU6Hr1G093300.8 , HORVU6Hr1G093300.19 , HORVU6Hr1G093300.18 , HORVU6Hr1G093300.13 , HORVU6Hr1G093300.12 , HORVU6Hr1G093300.11 , HORVU6Hr1G093300.10 , HORVU6Hr1G093300.16 , HORVU6Hr1G093300.15 , HORVU6Hr1G093300.14 , HORVU6Hr1G093300.17
Wheat TraesCS7B02G216100 , TraesCS6D02G392700 , TraesCS6A02G409100 , TraesCS6B02G455000 , TraesCS2D02G501600
Populus -


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cDNA sequences
Sobic.004G352600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G051600 expressed protein K15075: MET18, DNA repair/transcription protein MET18/MMS19
2 Sobic.001G090800 PHD finger family protein, putative, expressed -
3 Sobic.008G040000 PPR repeat containing protein, expressed -
4 Sobic.004G151000 RecF/RecN/SMC N terminal domain containing protein, expressed K10866: DNA repair protein RAD50
5 Sobic.004G027300 expressed protein -
6 Sobic.001G408500 alpha-taxilin, putative, expressed -
7 Sobic.002G409700 POLD1 - Putative DNA polymerase delta catalytic subunit, expressed K02350: REV3L, DNA polymerase zeta
8 Sobic.007G029200 myosin heavy chain-related, putative, expressed -
9 Sobic.001G453500 expressed protein -
10 Sobic.002G331000 OsFBX462 - F-box domain containing protein, expressed -
11 Sobic.005G143300 expressed protein -
12 Sobic.002G213800 auxin-repressed protein, putative, expressed -
13 Sobic.006G185200 RNA polymerase IV subunit, putative, expressed K16250: DNA-directed RNA polymerase IV subunit 1
14 Sobic.002G378100 DNA-directed RNA polymerase 1B, mitochondrial precursor, putative, expressed K10908: POLRMT, DNA-directed RNA polymerase, mitochondrial
15 Sobic.001G049800 DDT domain containing protein, putative, expressed -
16 Sobic.006G111200 RNA-dependent RNA polymerase, putative, expressed K11699: RDR, RNA-dependent RNA polymerase
17 Sobic.009G038600 GA20663-PA, putative, expressed -
18 Sobic.004G355200 jmjC domain containing protein, expressed K15601: [histone H3]-dimethyl-L-lysine9 demethylase
19 Sobic.005G220101 - -
20 Sobic.007G056200 HEAT repeat family protein, putative, expressed -


Gene co-expression network
sample Sobic004G352600 Sobic004G352600 Sobic002G051600 Sobic002G051600 Sobic004G352600--Sobic002G051600 Sobic001G090800 Sobic001G090800 Sobic004G352600--Sobic001G090800 Sobic008G040000 Sobic008G040000 Sobic004G352600--Sobic008G040000 Sobic004G151000 Sobic004G151000 Sobic004G352600--Sobic004G151000 Sobic004G027300 Sobic004G027300 Sobic004G352600--Sobic004G027300 Sobic001G408500 Sobic001G408500 Sobic004G352600--Sobic001G408500 Sobic002G409700 Sobic002G409700 Sobic004G352600--Sobic002G409700 Sobic007G029200 Sobic007G029200 Sobic004G352600--Sobic007G029200 Sobic001G453500 Sobic001G453500 Sobic004G352600--Sobic001G453500 Sobic002G051600--Sobic004G151000 Sobic006G185200 Sobic006G185200 Sobic002G051600--Sobic006G185200 Sobic006G140400 Sobic006G140400 Sobic002G051600--Sobic006G140400 Sobic002G051600--Sobic001G453500 Sobic010G224700 Sobic010G224700 Sobic002G051600--Sobic010G224700 Sobic002G051600--Sobic004G027300 Sobic003G199300 Sobic003G199300 Sobic002G051600--Sobic003G199300 Sobic006G059500 Sobic006G059500 Sobic002G051600--Sobic006G059500 Sobic002G378100 Sobic002G378100 Sobic002G051600--Sobic002G378100 Sobic001G134300 Sobic001G134300 Sobic001G090800--Sobic001G134300 Sobic010G065300 Sobic010G065300 Sobic001G090800--Sobic010G065300 Sobic007G044100 Sobic007G044100 Sobic001G090800--Sobic007G044100 Sobic010G001100 Sobic010G001100 Sobic001G090800--Sobic010G001100 Sobic002G153700 Sobic002G153700 Sobic001G090800--Sobic002G153700 Sobic010G279900 Sobic010G279900 Sobic001G090800--Sobic010G279900 Sobic001G306900 Sobic001G306900 Sobic001G090800--Sobic001G306900 Sobic003G293200 Sobic003G293200 Sobic001G090800--Sobic003G293200 Sobic005G163100 Sobic005G163100 Sobic001G090800--Sobic005G163100 Sobic006G265300 Sobic006G265300 Sobic008G040000--Sobic006G265300 Sobic008G040000--Sobic004G352600 Sobic010G232200 Sobic010G232200 Sobic008G040000--Sobic010G232200 Sobic009G038600 Sobic009G038600 Sobic008G040000--Sobic009G038600 Sobic001G359900 Sobic001G359900 Sobic008G040000--Sobic001G359900 Sobic004G355200 Sobic004G355200 Sobic008G040000--Sobic004G355200 Sobic005G005000 Sobic005G005000 Sobic008G040000--Sobic005G005000 Sobic003G395600 Sobic003G395600 Sobic008G040000--Sobic003G395600 Sobic005G110523 Sobic005G110523 Sobic008G040000--Sobic005G110523 Sobic001G049800 Sobic001G049800 Sobic004G151000--Sobic001G049800 Sobic004G151000--Sobic004G027300 Sobic006G111200 Sobic006G111200 Sobic004G151000--Sobic006G111200 Sobic004G151000--Sobic002G378100 Sobic007G060600 Sobic007G060600 Sobic004G151000--Sobic007G060600 Sobic002G112600 Sobic002G112600 Sobic004G151000--Sobic002G112600 Sobic004G151000--Sobic001G453500 Sobic004G151000--Sobic006G059500 Sobic007G059700 Sobic007G059700 Sobic004G151000--Sobic007G059700 Sobic004G027300--Sobic004G151000 Sobic004G027300--Sobic001G049800 Sobic004G027300--Sobic010G224700 Sobic004G027300--Sobic007G060600 Sobic004G027300--Sobic002G378100 Sobic003G425100 Sobic003G425100 Sobic004G027300--Sobic003G425100 Sobic004G027300--Sobic001G453500 Sobic004G027300--Sobic007G059700 Sobic004G027300--Sobic002G112600 Sobic002G139700 Sobic002G139700 Sobic001G408500--Sobic002G139700 Sobic001G038800 Sobic001G038800 Sobic001G408500--Sobic001G038800 Sobic007G005200 Sobic007G005200 Sobic001G408500--Sobic007G005200 Sobic004G112800 Sobic004G112800 Sobic001G408500--Sobic004G112800 Sobic004G208301 Sobic004G208301 Sobic001G408500--Sobic004G208301 Sobic005G068300 Sobic005G068300 Sobic001G408500--Sobic005G068300 Sobic003G124000 Sobic003G124000 Sobic001G408500--Sobic003G124000 Sobic009G051500 Sobic009G051500 Sobic001G408500--Sobic009G051500 Sobic001G095800 Sobic001G095800 Sobic001G408500--Sobic001G095800 Sobic008G185300 Sobic008G185300 Sobic002G409700--Sobic008G185300 Sobic005G028600 Sobic005G028600 Sobic002G409700--Sobic005G028600 Sobic004G263600 Sobic004G263600 Sobic002G409700--Sobic004G263600 Sobic005G110200 Sobic005G110200 Sobic002G409700--Sobic005G110200 Sobic001G280900 Sobic001G280900 Sobic002G409700--Sobic001G280900 Sobic003G252200 Sobic003G252200 Sobic002G409700--Sobic003G252200 Sobic007G099000 Sobic007G099000 Sobic002G409700--Sobic007G099000 Sobic005G090401 Sobic005G090401 Sobic002G409700--Sobic005G090401 Sobic007G020500 Sobic007G020500 Sobic002G409700--Sobic007G020500 Sobic005G191900 Sobic005G191900 Sobic007G029200--Sobic005G191900 Sobic009G142000 Sobic009G142000 Sobic007G029200--Sobic009G142000 Sobic006G215050 Sobic006G215050 Sobic007G029200--Sobic006G215050 Sobic001G167200 Sobic001G167200 Sobic007G029200--Sobic001G167200 Sobic004G085000 Sobic004G085000 Sobic007G029200--Sobic004G085000 Sobic008G002500 Sobic008G002500 Sobic007G029200--Sobic008G002500 Sobic007G029200--Sobic001G134300 Sobic002G317200 Sobic002G317200 Sobic007G029200--Sobic002G317200 Sobic001G352900 Sobic001G352900 Sobic007G029200--Sobic001G352900 Sobic001G453500--Sobic006G111200 Sobic001G368300 Sobic001G368300 Sobic001G453500--Sobic001G368300 Sobic001G453500--Sobic004G151000 Sobic001G453500--Sobic006G140400 Sobic004G027400 Sobic004G027400 Sobic001G453500--Sobic004G027400 Sobic001G453500--Sobic004G027300 Sobic001G453500--Sobic001G049800 Sobic001G453500--Sobic002G112600 Sobic009G105400 Sobic009G105400 Sobic001G453500--Sobic009G105400
Octagon: transcription factors


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