Gene annotation
Transcriptome id Sobic.008G124500.2,Sobic.008G124500.1
Synonym Sb08g017670
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
F-box/LRR-repeat protein 3, putative, expressed
UniProt A0A1B6PDB4 , A0A1Z5R768
Pfam -
Panther DB PTHR24006 PTHR24006:SF442
NCBI CDD KOG1947; Leucine rich repeat proteins, some proteins contain F-box
KEGG Orthology K10268; F-box and leucine-rich repeat protein 2/20
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G27920 : F-box family protein
RAP-DB (Rice) LOC_Os12g36670.1 : F-box/LRR-repeat protein 3, putative, expressed
MaizeGDB (Corn) Zm00025a054317 , Zm00025a031649 , Zm00025a025497
Brachypodium KQJ86395
Barley HORVU5Hr1G024060.3 , HORVU5Hr1G024060.2 , HORVU5Hr1G024060.1 , HORVU5Hr1G024060.5 , HORVU5Hr1G024060.4
Wheat TraesCS5B02G097800 , TraesCS5B02G097800 , TraesCS5A02G091800 , TraesCS5A02G091800 , TraesCS5A02G091800 , TraesCS5D02G103900 , TraesCS5D02G103900 , TraesCS5D02G103900 , TraesCS5D02G103900 , TraesCS5D02G103900 , TraesCS5D02G103900 , TraesCS5D02G103900
Populus -


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cDNA sequences
Sobic.008G124500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G315200 DNA-binding bromodomain-containing protein, putative, expressed -
2 Sobic.007G104800 expressed protein -
3 Sobic.004G196700 expressed protein -
4 Sobic.003G332800 GTPase-activating protein, putative, expressed -
5 Sobic.002G010300 photoperiodic flowering time gene(PubMedID : 22394582)@casein kinase II subunit alpha-2, putative, expressed K03097: casein kinase II subunit alpha
6 Sobic.007G167500 expressed protein -
7 Sobic.003G176500 - -
8 Sobic.004G188400 photoperiodic flowering time gene(PubMedID : 22394582)@FAD binding domain of DNA photolyase domain containing protein, expressed K12118: cryptochrome 1
9 Sobic.004G021100 SSE1, putative, expressed K13335: peroxin-16
10 Sobic.001G413500 expressed protein -
11 Sobic.010G199600 hydrolase, NUDIX family, domain containing protein, expressed -
12 Sobic.001G512700 myb/SANT domain protein, putative, expressed -
13 Sobic.001G251700 OsPP2Ac-4 - Phosphatase 2A isoform 4 belonging to family 2, expressed K04382: serine/threonine-protein phosphatase 2A catalytic subunit
14 Sobic.003G268300 surp module family protein, putative, expressed -
15 Sobic.001G446900 arginyl-tRNA synthetase, putative, expressed -
16 Sobic.001G543800 ethylene-responsive element-binding protein, putative, expressed -
17 Sobic.003G041000 holocarboxylase synthetase, putative, expressed -
18 Sobic.002G165300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MYB family transcription factor, putative, expressed K11111: TERF2, telomeric repeat-binding factor 2
19 Sobic.007G026300 pre-mRNA-splicing factor SLU7, putative, expressed K12819: pre-mRNA-processing factor SLU7
20 Sobic.001G409600 KH domain containing protein, putative, expressed K13095: splicing factor 1


Gene co-expression network
sample Sobic008G124500 Sobic008G124500 Sobic002G315200 Sobic002G315200 Sobic008G124500--Sobic002G315200 Sobic007G104800 Sobic007G104800 Sobic008G124500--Sobic007G104800 Sobic004G196700 Sobic004G196700 Sobic008G124500--Sobic004G196700 Sobic003G332800 Sobic003G332800 Sobic008G124500--Sobic003G332800 Sobic002G010300 Sobic002G010300 Sobic008G124500--Sobic002G010300 Sobic007G167500 Sobic007G167500 Sobic008G124500--Sobic007G167500 Sobic003G176500 Sobic003G176500 Sobic008G124500--Sobic003G176500 Sobic004G188400 Sobic004G188400 Sobic008G124500--Sobic004G188400 Sobic004G021100 Sobic004G021100 Sobic008G124500--Sobic004G021100 Sobic010G153700 Sobic010G153700 Sobic002G315200--Sobic010G153700 Sobic002G006900 Sobic002G006900 Sobic002G315200--Sobic002G006900 Sobic001G071400 Sobic001G071400 Sobic002G315200--Sobic001G071400 Sobic008G047800 Sobic008G047800 Sobic002G315200--Sobic008G047800 Sobic001G220300 Sobic001G220300 Sobic002G315200--Sobic001G220300 Sobic001G512700 Sobic001G512700 Sobic002G315200--Sobic001G512700 Sobic009G191000 Sobic009G191000 Sobic002G315200--Sobic009G191000 Sobic001G290100 Sobic001G290100 Sobic002G315200--Sobic001G290100 Sobic001G497300 Sobic001G497300 Sobic002G315200--Sobic001G497300 Sobic007G104800--Sobic001G497300 Sobic007G104800--Sobic004G021100 Sobic001G119300 Sobic001G119300 Sobic007G104800--Sobic001G119300 Sobic003G187400 Sobic003G187400 Sobic007G104800--Sobic003G187400 Sobic007G200600 Sobic007G200600 Sobic007G104800--Sobic007G200600 Sobic007G104800--Sobic001G512700 Sobic004G205600 Sobic004G205600 Sobic007G104800--Sobic004G205600 Sobic007G026300 Sobic007G026300 Sobic007G104800--Sobic007G026300 Sobic001G107500 Sobic001G107500 Sobic007G104800--Sobic001G107500 Sobic007G185900 Sobic007G185900 Sobic004G196700--Sobic007G185900 Sobic007G078000 Sobic007G078000 Sobic004G196700--Sobic007G078000 Sobic005G149500 Sobic005G149500 Sobic004G196700--Sobic005G149500 Sobic007G137900 Sobic007G137900 Sobic004G196700--Sobic007G137900 Sobic002G157300 Sobic002G157300 Sobic004G196700--Sobic002G157300 Sobic004G196700--Sobic003G187400 Sobic001G477800 Sobic001G477800 Sobic004G196700--Sobic001G477800 Sobic006G082600 Sobic006G082600 Sobic004G196700--Sobic006G082600 Sobic009G040700 Sobic009G040700 Sobic004G196700--Sobic009G040700 Sobic007G096600 Sobic007G096600 Sobic003G332800--Sobic007G096600 Sobic006G216800 Sobic006G216800 Sobic003G332800--Sobic006G216800 Sobic003G148000 Sobic003G148000 Sobic003G332800--Sobic003G148000 Sobic003G332800--Sobic002G006900 Sobic003G332800--Sobic007G167500 Sobic009G209300 Sobic009G209300 Sobic003G332800--Sobic009G209300 Sobic002G243900 Sobic002G243900 Sobic003G332800--Sobic002G243900 Sobic007G065400 Sobic007G065400 Sobic003G332800--Sobic007G065400 Sobic003G332800--Sobic003G176500 Sobic002G010300--Sobic007G026300 Sobic001G090400 Sobic001G090400 Sobic002G010300--Sobic001G090400 Sobic004G350100 Sobic004G350100 Sobic002G010300--Sobic004G350100 Sobic009G198100 Sobic009G198100 Sobic002G010300--Sobic009G198100 Sobic002G010300--Sobic004G021100 Sobic003G081000 Sobic003G081000 Sobic002G010300--Sobic003G081000 Sobic006G173100 Sobic006G173100 Sobic002G010300--Sobic006G173100 Sobic001G356600 Sobic001G356600 Sobic002G010300--Sobic001G356600 Sobic002G200100 Sobic002G200100 Sobic002G010300--Sobic002G200100 Sobic003G119000 Sobic003G119000 Sobic007G167500--Sobic003G119000 Sobic007G167500--Sobic002G006900 Sobic003G397800 Sobic003G397800 Sobic007G167500--Sobic003G397800 Sobic007G167500--Sobic007G096600 Sobic010G101800 Sobic010G101800 Sobic007G167500--Sobic010G101800 Sobic007G167500--Sobic007G065400 Sobic009G210500 Sobic009G210500 Sobic007G167500--Sobic009G210500 Sobic007G167500--Sobic003G332800 Sobic003G372700 Sobic003G372700 Sobic007G167500--Sobic003G372700 Sobic003G176500--Sobic007G096600 Sobic003G176500--Sobic002G243900 Sobic003G176500--Sobic002G006900 Sobic005G144400 Sobic005G144400 Sobic003G176500--Sobic005G144400 Sobic001G214300 Sobic001G214300 Sobic003G176500--Sobic001G214300 Sobic003G200200 Sobic003G200200 Sobic003G176500--Sobic003G200200 Sobic007G178700 Sobic007G178700 Sobic003G176500--Sobic007G178700 Sobic003G176500--Sobic003G148000 Sobic003G268300 Sobic003G268300 Sobic003G176500--Sobic003G268300 Sobic001G372700 Sobic001G372700 Sobic004G188400--Sobic001G372700 Sobic004G065650 Sobic004G065650 Sobic004G188400--Sobic004G065650 Sobic009G127900 Sobic009G127900 Sobic004G188400--Sobic009G127900 Sobic004G188400--Sobic003G268300 Sobic004G188400--Sobic006G082600 Sobic005G110472 Sobic005G110472 Sobic004G188400--Sobic005G110472 Sobic004G188400--Sobic004G196700 Sobic007G037900 Sobic007G037900 Sobic004G188400--Sobic007G037900 Sobic002G165300 Sobic002G165300 Sobic004G188400--Sobic002G165300 Sobic009G056800 Sobic009G056800 Sobic004G021100--Sobic009G056800 Sobic004G021100--Sobic007G026300 Sobic004G021100--Sobic001G512700 Sobic004G021100--Sobic006G173100 Sobic004G021100--Sobic007G104800 Sobic004G274200 Sobic004G274200 Sobic004G021100--Sobic004G274200 Sobic004G021100--Sobic004G205600 Sobic004G021100--Sobic003G187400 Sobic007G118600 Sobic007G118600 Sobic004G021100--Sobic007G118600
Octagon: transcription factors


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