Gene annotation
Transcriptome id Sobic.008G161700.3,Sobic.008G161700.1,Sobic.008G161700.2
Synonym Sb08g020830, ATHMT-2, HMT2, HMT-2
Functional annotation homocysteine S-methyltransferase protein, putative, expressed
UniProt A0A1Z5R6X9 , A0A1Z5R7Y6 , A0A1Z5R741
Pfam PF02574
Panther DB PTHR21091 PTHR21091:SF6
NCBI CDD KOG1579; Homocysteine S-methyltransferase
KEGG Orthology K00547; mmuM, homocysteine S-methyltransferase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G63250 : homocysteine methyltransferase 2
RAP-DB (Rice) LOC_Os12g41390.1 : homocysteine S-methyltransferase protein, putative, expressed
MaizeGDB (Corn) Zm00025a025324 , Zm00025a025321 , Zm00025a004648
Brachypodium KQJ85903
Barley HORVU5Hr1G012780.3 , HORVU5Hr1G012780.2 , HORVU5Hr1G012780.1 , HORVU5Hr1G012780.7 , HORVU5Hr1G012780.6 , HORVU5Hr1G012780.5 , HORVU5Hr1G012780.4 , HORVU5Hr1G012780.8
Wheat TraesCS5D02G064400 , TraesCS5A02G053100 , TraesCS5B02G063300
Populus -


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cDNA sequences
Sobic.008G161700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G072600 cytochrome b-c1 complex subunit 7, putative, expressed K00417: QCR7, ubiquinol-cytochrome c reductase subunit 7
2 Sobic.003G162000 - K00878: hydroxyethylthiazole kinase
3 Sobic.010G268200 zinc finger, C3HC4 type, domain containing protein, expressed -
4 Sobic.007G124100 Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor, putative, expressed K09286: EREBP-like factor
5 Sobic.003G422700 amino acid permease family protein, putative, expressed -
6 Sobic.006G251000 STE_MEKK_ste11_MAP3K.1 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
7 Sobic.008G003900 - -
8 Sobic.001G312900 transporter family protein, putative, expressed -
9 Sobic.003G290100 dual specificity protein phosphatase, putative, expressed -
10 Sobic.007G010000 OsFBL6 - F-box domain and LRR containing protein, expressed -
11 Sobic.009G029700 aminotransferase, putative, expressed K00818: E2.6.1.11, acetylornithine aminotransferase
12 Sobic.006G130800 transporter family protein, putative, expressed K08150: SLC2A13, MFS transporter, SP family, solute carrier family 2 (myo-inositol transporter), member 13
13 Sobic.001G351100 LOL3, putative, expressed -
14 Sobic.006G027000 expressed protein -
15 Sobic.010G199900 extracellular ligand-gated ion channel, putative, expressed -
16 Sobic.007G216700 peptidyl-prolyl cis-trans isomerase, putative, expressed -
17 Sobic.002G367100 protein of unknown function DUF1675 domain containing protein, expressed -
18 Sobic.004G340800 OsFBX70 - F-box domain containing protein, expressed -
19 Sobic.010G197700 cytochrome P450, putative, expressed -
20 Sobic.007G196900 expressed protein -


Gene co-expression network
sample Sobic008G161700 Sobic008G161700 Sobic002G072600 Sobic002G072600 Sobic008G161700--Sobic002G072600 Sobic003G162000 Sobic003G162000 Sobic008G161700--Sobic003G162000 Sobic010G268200 Sobic010G268200 Sobic008G161700--Sobic010G268200 Sobic007G124100 Sobic007G124100 Sobic008G161700--Sobic007G124100 Sobic003G422700 Sobic003G422700 Sobic008G161700--Sobic003G422700 Sobic006G251000 Sobic006G251000 Sobic008G161700--Sobic006G251000 Sobic008G003900 Sobic008G003900 Sobic008G161700--Sobic008G003900 Sobic001G312900 Sobic001G312900 Sobic008G161700--Sobic001G312900 Sobic003G290100 Sobic003G290100 Sobic008G161700--Sobic003G290100 Sobic002G072600--Sobic003G162000 Sobic010G156000 Sobic010G156000 Sobic002G072600--Sobic010G156000 Sobic002G134600 Sobic002G134600 Sobic002G072600--Sobic002G134600 Sobic004G311900 Sobic004G311900 Sobic002G072600--Sobic004G311900 Sobic006G073200 Sobic006G073200 Sobic002G072600--Sobic006G073200 Sobic004G246900 Sobic004G246900 Sobic002G072600--Sobic004G246900 Sobic002G072600--Sobic008G161700 Sobic001G362200 Sobic001G362200 Sobic002G072600--Sobic001G362200 Sobic006G032900 Sobic006G032900 Sobic002G072600--Sobic006G032900 Sobic003G162000--Sobic002G072600 Sobic003G162000--Sobic003G290100 Sobic003G162000--Sobic010G156000 Sobic004G337200 Sobic004G337200 Sobic003G162000--Sobic004G337200 Sobic006G130800 Sobic006G130800 Sobic003G162000--Sobic006G130800 Sobic006G027000 Sobic006G027000 Sobic003G162000--Sobic006G027000 Sobic010G080300 Sobic010G080300 Sobic003G162000--Sobic010G080300 Sobic001G541100 Sobic001G541100 Sobic003G162000--Sobic001G541100 Sobic001G412100 Sobic001G412100 Sobic003G162000--Sobic001G412100 Sobic003G026700 Sobic003G026700 Sobic010G268200--Sobic003G026700 Sobic002G136900 Sobic002G136900 Sobic010G268200--Sobic002G136900 Sobic002G095900 Sobic002G095900 Sobic010G268200--Sobic002G095900 Sobic008G000900 Sobic008G000900 Sobic010G268200--Sobic008G000900 Sobic001G341800 Sobic001G341800 Sobic010G268200--Sobic001G341800 Sobic006G042200 Sobic006G042200 Sobic010G268200--Sobic006G042200 Sobic008G177850 Sobic008G177850 Sobic010G268200--Sobic008G177850 Sobic008G125600 Sobic008G125600 Sobic010G268200--Sobic008G125600 Sobic001G279200 Sobic001G279200 Sobic010G268200--Sobic001G279200 Sobic002G207300 Sobic002G207300 Sobic007G124100--Sobic002G207300 Sobic007G139900 Sobic007G139900 Sobic007G124100--Sobic007G139900 Sobic001G118900 Sobic001G118900 Sobic007G124100--Sobic001G118900 Sobic002G367900 Sobic002G367900 Sobic007G124100--Sobic002G367900 Sobic001G161200 Sobic001G161200 Sobic007G124100--Sobic001G161200 Sobic004G065900 Sobic004G065900 Sobic007G124100--Sobic004G065900 Sobic009G028500 Sobic009G028500 Sobic007G124100--Sobic009G028500 Sobic004G176900 Sobic004G176900 Sobic007G124100--Sobic004G176900 Sobic003G131500 Sobic003G131500 Sobic007G124100--Sobic003G131500 Sobic001G351100 Sobic001G351100 Sobic003G422700--Sobic001G351100 Sobic003G422700--Sobic009G028500 Sobic003G403500 Sobic003G403500 Sobic003G422700--Sobic003G403500 Sobic003G422700--Sobic006G042200 Sobic004G281300 Sobic004G281300 Sobic003G422700--Sobic004G281300 Sobic003G424400 Sobic003G424400 Sobic003G422700--Sobic003G424400 Sobic001G034300 Sobic001G034300 Sobic003G422700--Sobic001G034300 Sobic009G195300 Sobic009G195300 Sobic003G422700--Sobic009G195300 Sobic003G422700--Sobic008G125600 Sobic001G251200 Sobic001G251200 Sobic006G251000--Sobic001G251200 Sobic007G180600 Sobic007G180600 Sobic006G251000--Sobic007G180600 Sobic001G477700 Sobic001G477700 Sobic006G251000--Sobic001G477700 Sobic001G096000 Sobic001G096000 Sobic006G251000--Sobic001G096000 Sobic005G143900 Sobic005G143900 Sobic006G251000--Sobic005G143900 Sobic001G538700 Sobic001G538700 Sobic006G251000--Sobic001G538700 Sobic007G196900 Sobic007G196900 Sobic006G251000--Sobic007G196900 Sobic006G251000--Sobic002G134600 Sobic002G110300 Sobic002G110300 Sobic006G251000--Sobic002G110300 Sobic007G189500 Sobic007G189500 Sobic008G003900--Sobic007G189500 Sobic002G116800 Sobic002G116800 Sobic008G003900--Sobic002G116800 Sobic007G010000 Sobic007G010000 Sobic008G003900--Sobic007G010000 Sobic007G105400 Sobic007G105400 Sobic008G003900--Sobic007G105400 Sobic002G273700 Sobic002G273700 Sobic008G003900--Sobic002G273700 Sobic006G213500 Sobic006G213500 Sobic008G003900--Sobic006G213500 Sobic001G101100 Sobic001G101100 Sobic008G003900--Sobic001G101100 Sobic009G008100 Sobic009G008100 Sobic008G003900--Sobic009G008100 Sobic003G086900 Sobic003G086900 Sobic008G003900--Sobic003G086900 Sobic001G312900--Sobic001G362200 Sobic003G109700 Sobic003G109700 Sobic001G312900--Sobic003G109700 Sobic001G312900--Sobic002G134600 Sobic004G004300 Sobic004G004300 Sobic001G312900--Sobic004G004300 Sobic002G350600 Sobic002G350600 Sobic001G312900--Sobic002G350600 Sobic006G280000 Sobic006G280000 Sobic001G312900--Sobic006G280000 Sobic009G042700 Sobic009G042700 Sobic001G312900--Sobic009G042700 Sobic006G052500 Sobic006G052500 Sobic001G312900--Sobic006G052500 Sobic003G331400 Sobic003G331400 Sobic001G312900--Sobic003G331400 Sobic003G290100--Sobic006G130800 Sobic003G290100--Sobic010G156000 Sobic003G290100--Sobic003G162000 Sobic003G141000 Sobic003G141000 Sobic003G290100--Sobic003G141000 Sobic003G290100--Sobic001G541100 Sobic005G026100 Sobic005G026100 Sobic003G290100--Sobic005G026100 Sobic003G290100--Sobic006G027000 Sobic003G290100--Sobic003G403500 Sobic001G339500 Sobic001G339500 Sobic003G290100--Sobic001G339500
Octagon: transcription factors


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