Gene annotation
Transcriptome id Sobic.009G021500.3,Sobic.009G021500.1,Sobic.009G021500.2
Synonym
Functional annotation expressed protein
UniProt A0A1B6P605
Pfam -
Panther DB PTHR33065 PTHR33065:SF10
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os05g02180.1 : expressed protein
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G194401 - -
2 Sobic.002G015266 - -
3 Sobic.007G012300 - -
4 Sobic.002G117300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@thaumatin, putative, expressed -
5 Sobic.003G355300 membrane associated DUF588 domain containing protein, putative, expressed -
6 Sobic.001G172400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@"BRD1(Ortholog in rice:Mori et al., 2002)"(PubMedID : 31659836)@cytochrome P450, putative, expressed K12640: CYP85A2, brassinosteroid-6-oxidase 2
7 Sobic.009G165600 DNA-directed RNA polymerase II subunit RPB9, putative, expressed K03017: RPB9, DNA-directed RNA polymerase II subunit RPB9
8 Sobic.001G133532 - -
9 Sobic.004G075100 - -
10 Sobic.006G239300 thiamine-repressible mitochondrial transport protein THI74, putative, expressed K15289: solute carrier family 35, member F5
11 Sobic.007G028832 - -
12 Sobic.001G488200 aminotransferase, putative, expressed K00827: alanine-glyoxylate transaminase / (R)-3-amino-2-methylpropionate-pyruvate transaminase
13 Sobic.010G262300 coiled-coil domain-containing protein 90A, mitochondrial precursor, putative, expressed -
14 Sobic.004G038600 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@OsSAUR4 - Auxin-responsive SAUR gene family member, expressed K14488: SAUR family protein
15 Sobic.002G362000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@vesicle transport protein GOT1B, putative, expressed -
16 Sobic.004G030501 - -
17 Sobic.002G414850 - -
18 Sobic.003G099232 - -
19 Sobic.005G033100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@acyl-CoA synthetase protein, putative, expressed K01897: ACSL, long-chain acyl-CoA synthetase
20 Sobic.004G353500 oxidoreductase, putative, expressed K00472: prolyl 4-hydroxylase


Gene co-expression network
sample Sobic009G021500 Sobic009G021500 Sobic001G194401 Sobic001G194401 Sobic009G021500--Sobic001G194401 Sobic002G015266 Sobic002G015266 Sobic009G021500--Sobic002G015266 Sobic007G012300 Sobic007G012300 Sobic009G021500--Sobic007G012300 Sobic002G117300 Sobic002G117300 Sobic009G021500--Sobic002G117300 Sobic003G355300 Sobic003G355300 Sobic009G021500--Sobic003G355300 Sobic001G172400 Sobic001G172400 Sobic009G021500--Sobic001G172400 Sobic009G165600 Sobic009G165600 Sobic009G021500--Sobic009G165600 Sobic001G133532 Sobic001G133532 Sobic009G021500--Sobic001G133532 Sobic004G075100 Sobic004G075100 Sobic009G021500--Sobic004G075100 Sobic007G122866 Sobic007G122866 Sobic001G194401--Sobic007G122866 Sobic001G052500 Sobic001G052500 Sobic001G194401--Sobic001G052500 Sobic001G194401--Sobic002G117300 Sobic002G242100 Sobic002G242100 Sobic001G194401--Sobic002G242100 Sobic001G185450 Sobic001G185450 Sobic001G194401--Sobic001G185450 Sobic004G195500 Sobic004G195500 Sobic001G194401--Sobic004G195500 Sobic003G076100 Sobic003G076100 Sobic001G194401--Sobic003G076100 Sobic007G074200 Sobic007G074200 Sobic001G194401--Sobic007G074200 Sobic002G192000 Sobic002G192000 Sobic001G194401--Sobic002G192000 Sobic004G127000 Sobic004G127000 Sobic002G015266--Sobic004G127000 Sobic001G305000 Sobic001G305000 Sobic002G015266--Sobic001G305000 Sobic008G183600 Sobic008G183600 Sobic002G015266--Sobic008G183600 Sobic008G006700 Sobic008G006700 Sobic002G015266--Sobic008G006700 Sobic002G186500 Sobic002G186500 Sobic002G015266--Sobic002G186500 Sobic002G113200 Sobic002G113200 Sobic002G015266--Sobic002G113200 Sobic001G020700 Sobic001G020700 Sobic002G015266--Sobic001G020700 Sobic001G265100 Sobic001G265100 Sobic002G015266--Sobic001G265100 Sobic003G284100 Sobic003G284100 Sobic002G015266--Sobic003G284100 Sobic001G482800 Sobic001G482800 Sobic007G012300--Sobic001G482800 Sobic004G088900 Sobic004G088900 Sobic007G012300--Sobic004G088900 Sobic003G315800 Sobic003G315800 Sobic007G012300--Sobic003G315800 Sobic003G208000 Sobic003G208000 Sobic007G012300--Sobic003G208000 Sobic009G260600 Sobic009G260600 Sobic007G012300--Sobic009G260600 Sobic001G365700 Sobic001G365700 Sobic007G012300--Sobic001G365700 Sobic004G038600 Sobic004G038600 Sobic007G012300--Sobic004G038600 Sobic010G216400 Sobic010G216400 Sobic007G012300--Sobic010G216400 Sobic001G120200 Sobic001G120200 Sobic007G012300--Sobic001G120200 Sobic002G117300--Sobic001G194401 Sobic001G349300 Sobic001G349300 Sobic002G117300--Sobic001G349300 Sobic002G117300--Sobic007G122866 Sobic008G017400 Sobic008G017400 Sobic002G117300--Sobic008G017400 Sobic002G117300--Sobic002G242100 Sobic006G163033 Sobic006G163033 Sobic002G117300--Sobic006G163033 Sobic003G383400 Sobic003G383400 Sobic002G117300--Sobic003G383400 Sobic002G117300--Sobic001G052500 Sobic009G013600 Sobic009G013600 Sobic002G117300--Sobic009G013600 Sobic003G289601 Sobic003G289601 Sobic003G355300--Sobic003G289601 Sobic009G179400 Sobic009G179400 Sobic003G355300--Sobic009G179400 Sobic002G246800 Sobic002G246800 Sobic003G355300--Sobic002G246800 Sobic004G159400 Sobic004G159400 Sobic003G355300--Sobic004G159400 Sobic002G329900 Sobic002G329900 Sobic003G355300--Sobic002G329900 Sobic003G273000 Sobic003G273000 Sobic003G355300--Sobic003G273000 Sobic009G209001 Sobic009G209001 Sobic003G355300--Sobic009G209001 Sobic001G197000 Sobic001G197000 Sobic003G355300--Sobic001G197000 Sobic003G296800 Sobic003G296800 Sobic003G355300--Sobic003G296800 Sobic006G096600 Sobic006G096600 Sobic001G172400--Sobic006G096600 Sobic001G172400--Sobic009G021500 Sobic001G087400 Sobic001G087400 Sobic001G172400--Sobic001G087400 Sobic003G437300 Sobic003G437300 Sobic001G172400--Sobic003G437300 Sobic002G325100 Sobic002G325100 Sobic001G172400--Sobic002G325100 Sobic002G193000 Sobic002G193000 Sobic001G172400--Sobic002G193000 Sobic004G085700 Sobic004G085700 Sobic001G172400--Sobic004G085700 Sobic010G198700 Sobic010G198700 Sobic001G172400--Sobic010G198700 Sobic001G347400 Sobic001G347400 Sobic001G172400--Sobic001G347400 Sobic004G155700 Sobic004G155700 Sobic009G165600--Sobic004G155700 Sobic005G185200 Sobic005G185200 Sobic009G165600--Sobic005G185200 Sobic009G165600--Sobic003G355300 Sobic001G528100 Sobic001G528100 Sobic009G165600--Sobic001G528100 Sobic001G088450 Sobic001G088450 Sobic009G165600--Sobic001G088450 Sobic001G027700 Sobic001G027700 Sobic009G165600--Sobic001G027700 Sobic001G135200 Sobic001G135200 Sobic009G165600--Sobic001G135200 Sobic002G382100 Sobic002G382100 Sobic009G165600--Sobic002G382100 Sobic009G165600--Sobic004G038600 Sobic009G057000 Sobic009G057000 Sobic001G133532--Sobic009G057000 Sobic009G158700 Sobic009G158700 Sobic001G133532--Sobic009G158700 Sobic002G128300 Sobic002G128300 Sobic001G133532--Sobic002G128300 Sobic008G044500 Sobic008G044500 Sobic001G133532--Sobic008G044500 Sobic001G243600 Sobic001G243600 Sobic001G133532--Sobic001G243600 Sobic009G106800 Sobic009G106800 Sobic001G133532--Sobic009G106800 Sobic001G444400 Sobic001G444400 Sobic001G133532--Sobic001G444400 Sobic004G189301 Sobic004G189301 Sobic001G133532--Sobic004G189301 Sobic003G364100 Sobic003G364100 Sobic001G133532--Sobic003G364100 Sobic003G191500 Sobic003G191500 Sobic004G075100--Sobic003G191500 Sobic002G338250 Sobic002G338250 Sobic004G075100--Sobic002G338250 Sobic009G216800 Sobic009G216800 Sobic004G075100--Sobic009G216800 Sobic002G362000 Sobic002G362000 Sobic004G075100--Sobic002G362000 Sobic009G063900 Sobic009G063900 Sobic004G075100--Sobic009G063900 Sobic001G389900 Sobic001G389900 Sobic004G075100--Sobic001G389900 Sobic003G357100 Sobic003G357100 Sobic004G075100--Sobic003G357100 Sobic004G259600 Sobic004G259600 Sobic004G075100--Sobic004G259600 Sobic006G239300 Sobic006G239300 Sobic004G075100--Sobic006G239300
Octagon: transcription factors


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