Gene annotation
Transcriptome id Sobic.005G033100.1
Synonym LACS6, ATLACS6, Sb05g002770
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
acyl-CoA synthetase protein, putative, expressed
UniProt A0A1B6PPY6
Pfam PF00501
Panther DB PTHR24096 PTHR24096:SF221
NCBI CDD -
KEGG Orthology K01897; ACSL, long-chain acyl-CoA synthetase
Gene Ontology GO:0008152; metabolic process GO:0003824catalytic activity


Orthologs (automatic annotation)
TAIR AT5G27600 : long-chain acyl-CoA synthetase 7
RAP-DB (Rice) LOC_Os12g04990.1 : acyl-CoA synthetase protein, putative, expressed
MaizeGDB (Corn) Zm00025a053674 , Zm00025a033453
Brachypodium KQJ89589 , KQJ92332
Barley HORVU5Hr1G040740.12 , HORVU5Hr1G040740.13 , HORVU5Hr1G040740.10 , HORVU5Hr1G040740.11 , HORVU5Hr1G040740.16 , HORVU5Hr1G040740.17 , HORVU5Hr1G040740.14 , HORVU5Hr1G040740.18 , HORVU5Hr1G040740.19 , HORVU4Hr1G025820.15 , HORVU4Hr1G025820.14 , HORVU4Hr1G025820.17 , HORVU4Hr1G025820.16 , HORVU4Hr1G025820.11 , HORVU4Hr1G025820.10 , HORVU4Hr1G025820.13 , HORVU4Hr1G025820.12 , HORVU5Hr1G040740.23 , HORVU5Hr1G040740.22 , HORVU5Hr1G040740.21 , HORVU5Hr1G040740.20 , HORVU5Hr1G040740.25 , HORVU5Hr1G040740.24 , HORVU5Hr1G040740.29 , HORVU5Hr1G040740.28 , HORVU5Hr1G040740.8 , HORVU5Hr1G040740.9 , HORVU5Hr1G040740.1 , HORVU5Hr1G040740.2 , HORVU5Hr1G040740.3 , HORVU5Hr1G040740.4 , HORVU5Hr1G040740.5 , HORVU5Hr1G040740.6 , HORVU5Hr1G040740.7 , HORVU5Hr1G040740.27 , HORVU5Hr1G040740.26 , HORVU4Hr1G025820.9 , HORVU4Hr1G025820.8 , HORVU4Hr1G025820.1 , HORVU4Hr1G025820.3 , HORVU4Hr1G025820.2 , HORVU4Hr1G025820.5 , HORVU4Hr1G025820.4 , HORVU4Hr1G025820.7 , HORVU4Hr1G025820.6
Wheat TraesCS5B02G131800 , TraesCS5B02G131800 , TraesCS5B02G131800 , TraesCS4A02G184900 , TraesCS4A02G184900 , TraesCS4B02G133700 , TraesCS4B02G133700 , TraesCS4B02G133700 , TraesCS4B02G133700 , TraesCS5D02G141300 , TraesCS5A02G133200 , TraesCS5A02G133200 , TraesCS5A02G133200 , TraesCS5A02G133200 , TraesCS5A02G133200 , TraesCS5A02G133200 , TraesCS4D02G128700 , TraesCS4D02G128700 , TraesCS4D02G128700 , TraesCS4D02G128700 , TraesCS4D02G128700 , TraesCS5B02G131800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G216400 expressed protein -
2 Sobic.002G220100 expressed protein -
3 Sobic.001G365700 OsRhmbd13 - Putative Rhomboid homologue, expressed -
4 Sobic.002G034700 similar to Putative uncharacterized protein(PubMedID : 29862293)@CAMK_KIN1/SNF1/Nim1_like.28 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
5 Sobic.009G176500 similar to Putative uncharacterized protein(PubMedID : 29862293)@harpin-induced protein 1 domain containing protein, expressed -
6 Sobic.004G127000 - -
7 Sobic.001G282900 cytidylyltransferase domain containing protein, expressed K00968: choline-phosphate cytidylyltransferase
8 Sobic.001G139700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
9 Sobic.003G016300 SFT2, putative, expressed -
10 Sobic.004G315000 expressed protein -
11 Sobic.001G219800 methyltransferase, putative, expressed -
12 Sobic.001G080800 oxidoreductase, putative, expressed K00472: prolyl 4-hydroxylase
13 Sobic.004G173700 SLL1 protein, putative, expressed -
14 Sobic.001G020700 expressed protein -
15 Sobic.004G247500 "HD-zip transcription factor, ortholog of sihdz02 of foxtail millet (Setaria italica L.)"(PubMedID : 29862293)@caleosin related protein, putative, expressed K17991: peroxygenase
16 Sobic.009G014700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cysteine-rich repeat secretory protein 55 precursor, putative, expressed -
17 Sobic.002G246800 acetyltransferase, GNAT family, putative, expressed K00621: GNPNAT1, glucosamine-phosphate N-acetyltransferase
18 Sobic.009G069600 NADP-ME(PubMedID : 19549309)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@NADP-malic enzyme(PubMedID : 26904072)@NADP-dependent malic enzyme(PubMedID : 27016024)@NADP-dependent malic enzyme, chloroplast precursor, putative, expressed K00029: E1.1.1.40, malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+)
19 Sobic.008G077400 - -
20 Sobic.010G094400 "cell wall modification, deposition of casparian strips, endodermis, transmembrane"(PubMedID : 24920445)@membrane associated DUF588 domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic005G033100 Sobic005G033100 Sobic010G216400 Sobic010G216400 Sobic005G033100--Sobic010G216400 Sobic002G220100 Sobic002G220100 Sobic005G033100--Sobic002G220100 Sobic001G365700 Sobic001G365700 Sobic005G033100--Sobic001G365700 Sobic002G034700 Sobic002G034700 Sobic005G033100--Sobic002G034700 Sobic009G176500 Sobic009G176500 Sobic005G033100--Sobic009G176500 Sobic004G127000 Sobic004G127000 Sobic005G033100--Sobic004G127000 Sobic001G282900 Sobic001G282900 Sobic005G033100--Sobic001G282900 Sobic001G139700 Sobic001G139700 Sobic005G033100--Sobic001G139700 Sobic003G016300 Sobic003G016300 Sobic005G033100--Sobic003G016300 Sobic010G216400--Sobic001G365700 Sobic009G069600 Sobic009G069600 Sobic010G216400--Sobic009G069600 Sobic004G232500 Sobic004G232500 Sobic010G216400--Sobic004G232500 Sobic010G031000 Sobic010G031000 Sobic010G216400--Sobic010G031000 Sobic003G273000 Sobic003G273000 Sobic010G216400--Sobic003G273000 Sobic009G176400 Sobic009G176400 Sobic010G216400--Sobic009G176400 Sobic003G335300 Sobic003G335300 Sobic010G216400--Sobic003G335300 Sobic004G173700 Sobic004G173700 Sobic010G216400--Sobic004G173700 Sobic001G482800 Sobic001G482800 Sobic010G216400--Sobic001G482800 Sobic002G220100--Sobic001G282900 Sobic002G220100--Sobic009G176500 Sobic004G315000 Sobic004G315000 Sobic002G220100--Sobic004G315000 Sobic002G220100--Sobic005G033100 Sobic002G220100--Sobic010G216400 Sobic002G329900 Sobic002G329900 Sobic002G220100--Sobic002G329900 Sobic002G173200 Sobic002G173200 Sobic002G220100--Sobic002G173200 Sobic001G047800 Sobic001G047800 Sobic002G220100--Sobic001G047800 Sobic003G296800 Sobic003G296800 Sobic002G220100--Sobic003G296800 Sobic001G365700--Sobic003G335300 Sobic001G365700--Sobic004G173700 Sobic001G365700--Sobic004G127000 Sobic003G137600 Sobic003G137600 Sobic001G365700--Sobic003G137600 Sobic001G365700--Sobic001G482800 Sobic001G365700--Sobic010G216400 Sobic003G284100 Sobic003G284100 Sobic001G365700--Sobic003G284100 Sobic001G365700--Sobic004G232500 Sobic010G043250 Sobic010G043250 Sobic001G365700--Sobic010G043250 Sobic001G485000 Sobic001G485000 Sobic002G034700--Sobic001G485000 Sobic006G120900 Sobic006G120900 Sobic002G034700--Sobic006G120900 Sobic001G020700 Sobic001G020700 Sobic002G034700--Sobic001G020700 Sobic007G138100 Sobic007G138100 Sobic002G034700--Sobic007G138100 Sobic002G397900 Sobic002G397900 Sobic002G034700--Sobic002G397900 Sobic003G129900 Sobic003G129900 Sobic002G034700--Sobic003G129900 Sobic001G387200 Sobic001G387200 Sobic002G034700--Sobic001G387200 Sobic009G017600 Sobic009G017600 Sobic002G034700--Sobic009G017600 Sobic003G380300 Sobic003G380300 Sobic002G034700--Sobic003G380300 Sobic009G176500--Sobic004G315000 Sobic009G176500--Sobic010G216400 Sobic006G224000 Sobic006G224000 Sobic009G176500--Sobic006G224000 Sobic009G176500--Sobic001G282900 Sobic004G159400 Sobic004G159400 Sobic009G176500--Sobic004G159400 Sobic002G227300 Sobic002G227300 Sobic009G176500--Sobic002G227300 Sobic009G176500--Sobic002G220100 Sobic001G508466 Sobic001G508466 Sobic009G176500--Sobic001G508466 Sobic008G006300 Sobic008G006300 Sobic009G176500--Sobic008G006300 Sobic004G127000--Sobic001G365700 Sobic002G113200 Sobic002G113200 Sobic004G127000--Sobic002G113200 Sobic004G127000--Sobic010G043250 Sobic004G127000--Sobic003G137600 Sobic004G127000--Sobic004G173700 Sobic004G127000--Sobic003G284100 Sobic003G212000 Sobic003G212000 Sobic004G127000--Sobic003G212000 Sobic004G247700 Sobic004G247700 Sobic004G127000--Sobic004G247700 Sobic003G139200 Sobic003G139200 Sobic004G127000--Sobic003G139200 Sobic001G282900--Sobic004G315000 Sobic001G282900--Sobic009G176500 Sobic001G282900--Sobic010G216400 Sobic002G183400 Sobic002G183400 Sobic001G282900--Sobic002G183400 Sobic001G282900--Sobic002G220100 Sobic001G282900--Sobic008G006300 Sobic004G123000 Sobic004G123000 Sobic001G282900--Sobic004G123000 Sobic001G282900--Sobic006G224000 Sobic001G282900--Sobic003G016300 Sobic005G058700 Sobic005G058700 Sobic001G139700--Sobic005G058700 Sobic003G128100 Sobic003G128100 Sobic001G139700--Sobic003G128100 Sobic003G436400 Sobic003G436400 Sobic001G139700--Sobic003G436400 Sobic008G010400 Sobic008G010400 Sobic001G139700--Sobic008G010400 Sobic001G139700--Sobic005G033100 Sobic002G260100 Sobic002G260100 Sobic001G139700--Sobic002G260100 Sobic003G208000 Sobic003G208000 Sobic001G139700--Sobic003G208000 Sobic009G087900 Sobic009G087900 Sobic001G139700--Sobic009G087900 Sobic006G059400 Sobic006G059400 Sobic001G139700--Sobic006G059400 Sobic002G352200 Sobic002G352200 Sobic003G016300--Sobic002G352200 Sobic002G217500 Sobic002G217500 Sobic003G016300--Sobic002G217500 Sobic001G192700 Sobic001G192700 Sobic003G016300--Sobic001G192700 Sobic001G219800 Sobic001G219800 Sobic003G016300--Sobic001G219800 Sobic008G018300 Sobic008G018300 Sobic003G016300--Sobic008G018300 Sobic006G203900 Sobic006G203900 Sobic003G016300--Sobic006G203900 Sobic002G255400 Sobic002G255400 Sobic003G016300--Sobic002G255400 Sobic009G211900 Sobic009G211900 Sobic003G016300--Sobic009G211900 Sobic002G420600 Sobic002G420600 Sobic003G016300--Sobic002G420600
Octagon: transcription factors


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