Gene annotation
Transcriptome id Sobic.009G025200.1,Sobic.009G025200.2,Sobic.009G025200.3
Synonym UPL4, Sb09g002120
Functional annotation HECT-domain domain containing protein, expressed
UniProt A0A1Z5R1J2 , A0A1Z5R0I3 , C5YZ27
Pfam PF00632
Panther DB PTHR11254 PTHR11254:SF327
NCBI CDD -
KEGG Orthology K10590; E3 ubiquitin-protein ligase TRIP12
Gene Ontology GO:0004842; ubiquitin-protein transferase activity


Orthologs (automatic annotation)
TAIR AT5G02880 : ubiquitin-protein ligase 4
RAP-DB (Rice) LOC_Os05g03100.1 : HECT-domain domain containing protein, expressed
MaizeGDB (Corn) Zm00025a040760 , Zm00025a040718 , Zm00025a040717
Brachypodium PNT71974
Barley HORVU1Hr1G012300.3 , HORVU1Hr1G012300.2 , HORVU1Hr1G012300.1 , HORVU1Hr1G012300.4 , HORVU1Hr1G012300.5
Wheat TraesCS1A02G059500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G171000 phospholipid-transporting ATPase 4, putative, expressed K01530: phospholipid-translocating ATPase
2 Sobic.002G295700 transporter family protein, putative, expressed -
3 Sobic.002G007800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transcription factor jumonji, putative, expressed K11446: KDM5, [histone H3]-trimethyl-L-lysine4 demethylase
4 Sobic.002G304700 RFT1, putative, expressed K06316: oligosaccharide translocation protein RFT1
5 Sobic.002G265300 acyl-coenzyme A thioesterase 10, mitochondrial precursor, putative, expressed K17361: acyl-coenzyme A thioesterase 9
6 Sobic.002G095100 RNA-binding region RNP-1, putative, expressed -
7 Sobic.001G449000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@haemolysin-III, putative, expressed K07297: adiponectin receptor
8 Sobic.010G160300 RNA recognition motif containing protein, putative, expressed -
9 Sobic.002G431000 transporter, putative, expressed -
10 Sobic.001G277300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsFBX351 - F-box domain containing protein, expressed -
11 Sobic.K043400 dnaJ homolog subfamily C member, putative, expressed K09523: DnaJ homolog subfamily C member 3
12 Sobic.002G117600 myosin, putative, expressed K10357: myosin V
13 Sobic.002G057400 expressed protein K16586: HAUS augmin-like complex subunit 3
14 Sobic.006G203300 GPR89A, putative, expressed -
15 Sobic.001G501900 appr-1-p processing enzyme family protein, putative, expressed -
16 Sobic.004G112900 expressed protein -
17 Sobic.004G096700 xaa-Pro dipeptidase, putative, expressed K14213: Xaa-Pro dipeptidase
18 Sobic.003G160500 thiamin pyrophosphokinase 1, putative, expressed K00949: thiN, TPK1, thiamine pyrophosphokinase
19 Sobic.001G445500 coatomer subunit gamma-1, putative, expressed K17267: coatomer subunit gamma
20 Sobic.002G139600 2-phosphoglycerate kinase-related, putative, expressed -


Gene co-expression network
sample Sobic009G025200 Sobic009G025200 Sobic010G171000 Sobic010G171000 Sobic009G025200--Sobic010G171000 Sobic002G295700 Sobic002G295700 Sobic009G025200--Sobic002G295700 Sobic002G007800 Sobic002G007800 Sobic009G025200--Sobic002G007800 Sobic002G304700 Sobic002G304700 Sobic009G025200--Sobic002G304700 Sobic002G265300 Sobic002G265300 Sobic009G025200--Sobic002G265300 Sobic002G095100 Sobic002G095100 Sobic009G025200--Sobic002G095100 Sobic001G449000 Sobic001G449000 Sobic009G025200--Sobic001G449000 Sobic010G160300 Sobic010G160300 Sobic009G025200--Sobic010G160300 Sobic002G431000 Sobic002G431000 Sobic009G025200--Sobic002G431000 Sobic001G445500 Sobic001G445500 Sobic010G171000--Sobic001G445500 Sobic010G065200 Sobic010G065200 Sobic010G171000--Sobic010G065200 Sobic008G019532 Sobic008G019532 Sobic010G171000--Sobic008G019532 Sobic001G455000 Sobic001G455000 Sobic010G171000--Sobic001G455000 Sobic001G374000 Sobic001G374000 Sobic010G171000--Sobic001G374000 Sobic002G117600 Sobic002G117600 Sobic010G171000--Sobic002G117600 Sobic010G171000--Sobic010G160300 Sobic001G114200 Sobic001G114200 Sobic010G171000--Sobic001G114200 Sobic003G346400 Sobic003G346400 Sobic010G171000--Sobic003G346400 SobicK043400 SobicK043400 Sobic002G295700--SobicK043400 Sobic002G295700--Sobic002G431000 Sobic004G096700 Sobic004G096700 Sobic002G295700--Sobic004G096700 Sobic002G295700--Sobic010G171000 Sobic008G151500 Sobic008G151500 Sobic002G295700--Sobic008G151500 Sobic002G295700--Sobic009G025200 Sobic001G378200 Sobic001G378200 Sobic002G295700--Sobic001G378200 Sobic004G000100 Sobic004G000100 Sobic002G295700--Sobic004G000100 Sobic001G443200 Sobic001G443200 Sobic002G295700--Sobic001G443200 Sobic002G007800--Sobic002G304700 Sobic009G106700 Sobic009G106700 Sobic002G007800--Sobic009G106700 Sobic002G007800--Sobic010G160300 Sobic010G095400 Sobic010G095400 Sobic002G007800--Sobic010G095400 Sobic006G166400 Sobic006G166400 Sobic002G007800--Sobic006G166400 Sobic001G501900 Sobic001G501900 Sobic002G007800--Sobic001G501900 Sobic002G057400 Sobic002G057400 Sobic002G007800--Sobic002G057400 Sobic003G211800 Sobic003G211800 Sobic002G007800--Sobic003G211800 Sobic003G385300 Sobic003G385300 Sobic002G007800--Sobic003G385300 Sobic002G304700--Sobic010G160300 Sobic006G156400 Sobic006G156400 Sobic002G304700--Sobic006G156400 Sobic001G280500 Sobic001G280500 Sobic002G304700--Sobic001G280500 Sobic002G304700--Sobic003G385300 Sobic001G149000 Sobic001G149000 Sobic002G304700--Sobic001G149000 Sobic004G077300 Sobic004G077300 Sobic002G304700--Sobic004G077300 Sobic002G304700--Sobic002G007800 Sobic002G304700--Sobic009G106700 Sobic005G063200 Sobic005G063200 Sobic002G304700--Sobic005G063200 Sobic003G377000 Sobic003G377000 Sobic002G265300--Sobic003G377000 Sobic002G265300--Sobic002G007800 Sobic002G265300--Sobic004G096700 Sobic002G265300--Sobic002G431000 Sobic002G426300 Sobic002G426300 Sobic002G265300--Sobic002G426300 Sobic002G265300--Sobic010G171000 Sobic009G241000 Sobic009G241000 Sobic002G265300--Sobic009G241000 Sobic010G184300 Sobic010G184300 Sobic002G265300--Sobic010G184300 Sobic002G265300--Sobic009G025200 Sobic002G095100--Sobic002G304700 Sobic002G095100--Sobic002G057400 Sobic002G095100--Sobic010G160300 Sobic002G095100--Sobic002G007800 Sobic002G095100--Sobic006G156400 Sobic002G060400 Sobic002G060400 Sobic002G095100--Sobic002G060400 Sobic002G095100--Sobic001G501900 Sobic001G404900 Sobic001G404900 Sobic002G095100--Sobic001G404900 Sobic007G086600 Sobic007G086600 Sobic002G095100--Sobic007G086600 Sobic001G080800 Sobic001G080800 Sobic001G449000--Sobic001G080800 Sobic002G193500 Sobic002G193500 Sobic001G449000--Sobic002G193500 Sobic004G328100 Sobic004G328100 Sobic001G449000--Sobic004G328100 Sobic001G485000 Sobic001G485000 Sobic001G449000--Sobic001G485000 Sobic010G051800 Sobic010G051800 Sobic001G449000--Sobic010G051800 Sobic007G218600 Sobic007G218600 Sobic001G449000--Sobic007G218600 Sobic001G449000--Sobic010G160300 Sobic001G449000--Sobic002G304700 Sobic001G449000--Sobic007G086600 Sobic010G160300--Sobic002G304700 Sobic010G160300--Sobic001G280500 Sobic010G160300--Sobic005G063200 Sobic010G160300--Sobic001G114200 Sobic010G160300--Sobic001G501900 Sobic004G350700 Sobic004G350700 Sobic010G160300--Sobic004G350700 Sobic010G160300--Sobic002G007800 Sobic003G117800 Sobic003G117800 Sobic010G160300--Sobic003G117800 Sobic010G160300--Sobic001G149000 Sobic002G431000--Sobic010G184300 Sobic002G431000--Sobic002G295700 Sobic002G431000--Sobic003G377000 Sobic001G457700 Sobic001G457700 Sobic002G431000--Sobic001G457700 Sobic004G236200 Sobic004G236200 Sobic002G431000--Sobic004G236200 Sobic005G177700 Sobic005G177700 Sobic002G431000--Sobic005G177700 Sobic004G112900 Sobic004G112900 Sobic002G431000--Sobic004G112900 Sobic007G056100 Sobic007G056100 Sobic002G431000--Sobic007G056100 Sobic010G064600 Sobic010G064600 Sobic002G431000--Sobic010G064600
Octagon: transcription factors


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