Gene annotation
Transcriptome id Sobic.009G034100.2,Sobic.009G034100.1
Synonym Sb09g002890
Functional annotation peptide chain release factor protein, putative, expressed
UniProt C5YZJ7 , C5YZJ8
Pfam PF00472 PF03462
Panther DB PTHR11075 PTHR11075:SF9
NCBI CDD KOG2726; Mitochondrial polypeptide chain release factor
KEGG Orthology K02835; prfA, MTRF1, peptide chain release factor 1
Gene Ontology GO:0006415; translational termination GO:0003747translation release factor activity GO:0016149translation release factor activity, codon specific GO:0005737cytoplasm


Orthologs (automatic annotation)
TAIR AT2G47020 : Peptide chain release factor 1
RAP-DB (Rice) LOC_Os05g19630.1 : peptide chain release factor protein, putative, expressed
MaizeGDB (Corn) Zm00025a055327 , Zm00025a055330
Brachypodium KQK07674
Barley -
Wheat TraesCS1D02G082000 , TraesCS1B02G098300 , TraesCS1B02G098300 , TraesCS1A02G080300
Populus -


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cDNA sequences
Sobic.009G034100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G090300 tRNA-splicing endonuclease positive effector-related, putative, expressed K10706: SETX, senataxin
2 Sobic.009G113100 Putative splicing factor(PubMedID : 24356560)@RNA recognition motif containing protein, expressed K12890: SFRS1, ASF, splicing factor, arginine/serine-rich 1
3 Sobic.009G069200 glycine-rich protein, putative, expressed -
4 Sobic.001G423300 outer membrane protein, OMP85 family, putative, expressed -
5 Sobic.008G125100 Mur ligase family protein, putative, expressed -
6 Sobic.005G199200 nuclear pore protein 84/107 containing protein, expressed K14301: NUP107, nuclear pore complex protein Nup107
7 Sobic.008G164700 - -
8 Sobic.001G013300 SWIM zinc finger family protein, putative, expressed -
9 Sobic.009G257500 expressed protein -
10 Sobic.003G415100 BTBM1 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed -
11 Sobic.009G122900 alpha 1,3-xylosyltransferase, putative, expressed K11714: rhamnogalacturonan II specific xylosyltransferase
12 Sobic.003G298900 1,3-beta-glucan synthase component, putative, expressed K11000: callose synthase
13 Sobic.006G250100 tRNA-specific adenosine deaminase 1, putative, expressed K15440: TAD1, tRNA-specific adenosine deaminase 1
14 Sobic.002G343200 homeodomain-like, putative, expressed -
15 Sobic.003G052800 RST1, putative, expressed -
16 Sobic.002G254800 DNA topoisomerase 3 protein, putative, expressed K03165: DNA topoisomerase III
17 Sobic.008G057000 SWIRM domain containing protein, expressed K11649: SWI/SNF related-matrix-associated actin-dependent regulator of chromatin subfamily C
18 Sobic.004G128200 Probable LRR receptor-like serine/threonine-protein kinase At5g10290(PubMedID : 31721651)@BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed -
19 Sobic.005G187400 A49-like RNA polymerase I associated factor family protein, expressed K03005: RPA49, DNA-directed RNA polymerase I subunit RPA49
20 Sobic.005G160200 sialyltransferase family domain containing protein, expressed -


Gene co-expression network
sample Sobic009G034100 Sobic009G034100 Sobic001G090300 Sobic001G090300 Sobic009G034100--Sobic001G090300 Sobic009G113100 Sobic009G113100 Sobic009G034100--Sobic009G113100 Sobic009G069200 Sobic009G069200 Sobic009G034100--Sobic009G069200 Sobic001G423300 Sobic001G423300 Sobic009G034100--Sobic001G423300 Sobic008G125100 Sobic008G125100 Sobic009G034100--Sobic008G125100 Sobic005G199200 Sobic005G199200 Sobic009G034100--Sobic005G199200 Sobic008G164700 Sobic008G164700 Sobic009G034100--Sobic008G164700 Sobic001G013300 Sobic001G013300 Sobic009G034100--Sobic001G013300 Sobic009G257500 Sobic009G257500 Sobic009G034100--Sobic009G257500 Sobic001G090300--Sobic005G199200 Sobic001G090300--Sobic009G113100 Sobic005G040900 Sobic005G040900 Sobic001G090300--Sobic005G040900 Sobic003G415100 Sobic003G415100 Sobic001G090300--Sobic003G415100 Sobic009G074700 Sobic009G074700 Sobic001G090300--Sobic009G074700 Sobic007G187600 Sobic007G187600 Sobic001G090300--Sobic007G187600 Sobic009G129600 Sobic009G129600 Sobic001G090300--Sobic009G129600 Sobic009G000400 Sobic009G000400 Sobic001G090300--Sobic009G000400 Sobic001G334100 Sobic001G334100 Sobic001G090300--Sobic001G334100 Sobic009G113100--Sobic009G069200 Sobic009G113100--Sobic001G090300 Sobic005G198200 Sobic005G198200 Sobic009G113100--Sobic005G198200 Sobic001G004100 Sobic001G004100 Sobic009G113100--Sobic001G004100 Sobic002G208400 Sobic002G208400 Sobic009G113100--Sobic002G208400 Sobic009G113100--Sobic007G187600 Sobic003G214700 Sobic003G214700 Sobic009G113100--Sobic003G214700 Sobic009G113100--Sobic001G013300 Sobic006G061100 Sobic006G061100 Sobic009G113100--Sobic006G061100 Sobic009G069200--Sobic009G113100 Sobic009G069200--Sobic003G415100 Sobic010G038900 Sobic010G038900 Sobic009G069200--Sobic010G038900 Sobic002G390400 Sobic002G390400 Sobic009G069200--Sobic002G390400 Sobic009G069200--Sobic005G198200 Sobic002G315100 Sobic002G315100 Sobic009G069200--Sobic002G315100 Sobic009G069200--Sobic001G090300 Sobic005G160200 Sobic005G160200 Sobic009G069200--Sobic005G160200 Sobic008G045800 Sobic008G045800 Sobic009G069200--Sobic008G045800 Sobic005G187400 Sobic005G187400 Sobic001G423300--Sobic005G187400 Sobic001G423300--Sobic009G113100 Sobic001G462401 Sobic001G462401 Sobic001G423300--Sobic001G462401 Sobic009G254000 Sobic009G254000 Sobic001G423300--Sobic009G254000 Sobic010G207400 Sobic010G207400 Sobic001G423300--Sobic010G207400 Sobic004G155800 Sobic004G155800 Sobic001G423300--Sobic004G155800 Sobic008G179800 Sobic008G179800 Sobic001G423300--Sobic008G179800 Sobic001G423300--Sobic006G061100 Sobic004G075700 Sobic004G075700 Sobic001G423300--Sobic004G075700 Sobic009G122900 Sobic009G122900 Sobic008G125100--Sobic009G122900 Sobic001G315400 Sobic001G315400 Sobic008G125100--Sobic001G315400 Sobic007G000400 Sobic007G000400 Sobic008G125100--Sobic007G000400 Sobic004G128200 Sobic004G128200 Sobic008G125100--Sobic004G128200 Sobic001G236800 Sobic001G236800 Sobic008G125100--Sobic001G236800 Sobic003G304800 Sobic003G304800 Sobic008G125100--Sobic003G304800 Sobic007G172600 Sobic007G172600 Sobic008G125100--Sobic007G172600 Sobic004G178400 Sobic004G178400 Sobic008G125100--Sobic004G178400 Sobic002G380100 Sobic002G380100 Sobic008G125100--Sobic002G380100 Sobic005G199200--Sobic001G090300 Sobic003G184400 Sobic003G184400 Sobic005G199200--Sobic003G184400 Sobic005G199200--Sobic004G128200 Sobic005G199200--Sobic001G334100 Sobic009G104900 Sobic009G104900 Sobic005G199200--Sobic009G104900 Sobic001G373000 Sobic001G373000 Sobic005G199200--Sobic001G373000 Sobic010G278600 Sobic010G278600 Sobic005G199200--Sobic010G278600 Sobic002G142600 Sobic002G142600 Sobic005G199200--Sobic002G142600 Sobic003G246000 Sobic003G246000 Sobic005G199200--Sobic003G246000 Sobic008G057000 Sobic008G057000 Sobic008G164700--Sobic008G057000 Sobic006G015500 Sobic006G015500 Sobic008G164700--Sobic006G015500 Sobic008G164700--Sobic009G113100 Sobic002G254800 Sobic002G254800 Sobic008G164700--Sobic002G254800 Sobic001G222000 Sobic001G222000 Sobic008G164700--Sobic001G222000 Sobic003G409200 Sobic003G409200 Sobic008G164700--Sobic003G409200 Sobic001G542450 Sobic001G542450 Sobic008G164700--Sobic001G542450 Sobic003G361400 Sobic003G361400 Sobic008G164700--Sobic003G361400 Sobic008G164700--Sobic001G090300 Sobic004G285000 Sobic004G285000 Sobic001G013300--Sobic004G285000 Sobic001G013300--Sobic001G373000 Sobic008G147200 Sobic008G147200 Sobic001G013300--Sobic008G147200 Sobic001G346900 Sobic001G346900 Sobic001G013300--Sobic001G346900 Sobic001G013300--Sobic001G004100 Sobic010G215900 Sobic010G215900 Sobic001G013300--Sobic010G215900 Sobic001G013300--Sobic003G409200 Sobic001G013300--Sobic007G187600 Sobic001G023800 Sobic001G023800 Sobic001G013300--Sobic001G023800 Sobic006G126600 Sobic006G126600 Sobic009G257500--Sobic006G126600 Sobic009G032200 Sobic009G032200 Sobic009G257500--Sobic009G032200 Sobic009G257500--Sobic008G045800 Sobic009G257500--Sobic003G415100 Sobic008G056200 Sobic008G056200 Sobic009G257500--Sobic008G056200 Sobic010G189100 Sobic010G189100 Sobic009G257500--Sobic010G189100 Sobic010G236200 Sobic010G236200 Sobic009G257500--Sobic010G236200 Sobic008G156200 Sobic008G156200 Sobic009G257500--Sobic008G156200 Sobic010G262900 Sobic010G262900 Sobic009G257500--Sobic010G262900
Octagon: transcription factors


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