Gene annotation
Transcriptome id Sobic.009G075600.1
Synonym SbBBX17, SbBBX17;B-box (BBX) protein, B-box (BBX) protein, LZF1, STH3, DBB3, Sb09g006370
Functional annotation B-box (BBX) protein (PubMedID : 30626335)
down-regulated TF in developmental senescence (PubMedID : 27586543)
B-box zinc finger family protein, putative, expressed
UniProt C5YUM1
Pfam PF00643
Panther DB PTHR31832 PTHR31832:SF9
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005622intracellular


Orthologs (automatic annotation)
TAIR AT1G78600 : light-regulated zinc finger protein 1
RAP-DB (Rice) LOC_Os05g11510.1 : B-box zinc finger family protein, putative, expressed
MaizeGDB (Corn) Zm00025a043138
Brachypodium KQK07074 , KQK03217
Barley HORVU3Hr1G026500.8 , HORVU3Hr1G026500.9 , HORVU3Hr1G026500.4 , HORVU3Hr1G026500.5 , HORVU3Hr1G026500.6 , HORVU3Hr1G026500.1 , HORVU3Hr1G026500.2 , HORVU3Hr1G026500.3
Wheat TraesCS3A02G139300 , TraesCS3B02G156900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G334000 expressed protein -
2 Sobic.003G277600 DNAse I-like superfamily protein(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@endonuclease/exonuclease/phosphatase family domain containing protein, expressed -
3 Sobic.004G165500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
4 Sobic.010G218200 FAD binding domain of DNA photolyase domain containing protein, expressed K01669: deoxyribodipyrimidine photo-lyase
5 Sobic.001G073300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@methyltransferase, putative, expressed -
6 Sobic.007G062200 expressed protein -
7 Sobic.003G139500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CDPK - CBL-interacting protein kinase 1(PubMedID : 31721651)@Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.9 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K07198: PRKAA, 5'-AMP-activated protein kinase, catalytic alpha subunit
8 Sobic.001G313000 expressed protein -
9 Sobic.004G220700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Lyase(PubMedID : 30367619)@phenylalanine ammonia-lyase, putative, expressed K10775: phenylalanine ammonia-lyase
10 Sobic.001G043000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@short-chain dehydrogenase/reductase, putative, expressed K15095: (+)-neomenthol dehydrogenase
11 Sobic.003G282000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@suppressor of phythchrome A, putative, expressed -
12 Sobic.001G298400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CCT motif family protein, expressed -
13 Sobic.008G149000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@anthocyanidin 5,3-O-glucosyltransferase, putative, expressed -
14 Sobic.003G115000 - -
15 Sobic.009G246300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CGMC_MAPKCMGC_2.4 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3
16 Sobic.004G322700 - -
17 Sobic.003G372400 amidophosphoribosyltransferase, chloroplast precursor, putative, expressed K00764: purF, amidophosphoribosyltransferase
18 Sobic.007G140700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aldehyde dehydrogenase, putative, expressed K00131: glyceraldehyde-3-phosphate dehydrogenase (NADP+)
19 Sobic.002G390100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.29 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K07198: PRKAA, 5'-AMP-activated protein kinase, catalytic alpha subunit
20 Sobic.001G302200 glycosyl transferase 8 domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic009G075600 Sobic009G075600 Sobic003G334000 Sobic003G334000 Sobic009G075600--Sobic003G334000 Sobic003G277600 Sobic003G277600 Sobic009G075600--Sobic003G277600 Sobic004G165500 Sobic004G165500 Sobic009G075600--Sobic004G165500 Sobic010G218200 Sobic010G218200 Sobic009G075600--Sobic010G218200 Sobic001G073300 Sobic001G073300 Sobic009G075600--Sobic001G073300 Sobic007G062200 Sobic007G062200 Sobic009G075600--Sobic007G062200 Sobic003G139500 Sobic003G139500 Sobic009G075600--Sobic003G139500 Sobic001G313000 Sobic001G313000 Sobic009G075600--Sobic001G313000 Sobic004G220700 Sobic004G220700 Sobic009G075600--Sobic004G220700 Sobic003G339700 Sobic003G339700 Sobic003G334000--Sobic003G339700 Sobic003G381700 Sobic003G381700 Sobic003G334000--Sobic003G381700 Sobic003G334000--Sobic003G277600 Sobic003G334000--Sobic007G062200 Sobic003G372400 Sobic003G372400 Sobic003G334000--Sobic003G372400 Sobic003G051000 Sobic003G051000 Sobic003G334000--Sobic003G051000 Sobic006G064200 Sobic006G064200 Sobic003G334000--Sobic006G064200 Sobic008G077500 Sobic008G077500 Sobic003G334000--Sobic008G077500 Sobic006G130000 Sobic006G130000 Sobic003G334000--Sobic006G130000 Sobic003G277600--Sobic003G372400 Sobic009G246300 Sobic009G246300 Sobic003G277600--Sobic009G246300 Sobic003G277600--Sobic004G165500 Sobic010G104800 Sobic010G104800 Sobic003G277600--Sobic010G104800 Sobic009G048900 Sobic009G048900 Sobic003G277600--Sobic009G048900 Sobic004G112100 Sobic004G112100 Sobic003G277600--Sobic004G112100 Sobic003G277600--Sobic003G139500 Sobic001G043000 Sobic001G043000 Sobic003G277600--Sobic001G043000 Sobic003G042900 Sobic003G042900 Sobic003G277600--Sobic003G042900 Sobic004G165500--Sobic003G042900 Sobic004G165500--Sobic001G073300 Sobic002G390100 Sobic002G390100 Sobic004G165500--Sobic002G390100 Sobic009G256100 Sobic009G256100 Sobic004G165500--Sobic009G256100 Sobic007G105500 Sobic007G105500 Sobic004G165500--Sobic007G105500 Sobic006G093100 Sobic006G093100 Sobic004G165500--Sobic006G093100 Sobic002G404800 Sobic002G404800 Sobic004G165500--Sobic002G404800 Sobic004G215800 Sobic004G215800 Sobic004G165500--Sobic004G215800 Sobic004G165500--Sobic010G104800 Sobic010G218200--Sobic002G390100 Sobic009G194500 Sobic009G194500 Sobic010G218200--Sobic009G194500 Sobic006G161500 Sobic006G161500 Sobic010G218200--Sobic006G161500 Sobic002G196600 Sobic002G196600 Sobic010G218200--Sobic002G196600 Sobic010G218200--Sobic003G042900 Sobic010G218200--Sobic001G073300 Sobic008G129900 Sobic008G129900 Sobic010G218200--Sobic008G129900 Sobic010G231300 Sobic010G231300 Sobic010G218200--Sobic010G231300 Sobic002G119100 Sobic002G119100 Sobic010G218200--Sobic002G119100 Sobic001G073300--Sobic010G104800 Sobic001G073300--Sobic006G161500 Sobic001G073300--Sobic009G256100 Sobic001G244600 Sobic001G244600 Sobic001G073300--Sobic001G244600 Sobic003G409700 Sobic003G409700 Sobic001G073300--Sobic003G409700 Sobic001G073300--Sobic002G390100 Sobic001G073300--Sobic010G231300 Sobic001G073300--Sobic003G042900 Sobic001G073300--Sobic008G129900 Sobic001G498000 Sobic001G498000 Sobic007G062200--Sobic001G498000 Sobic007G062200--Sobic003G334000 Sobic007G062200--Sobic003G051000 Sobic010G251300 Sobic010G251300 Sobic007G062200--Sobic010G251300 Sobic010G102800 Sobic010G102800 Sobic007G062200--Sobic010G102800 Sobic007G062200--Sobic003G339700 Sobic002G200700 Sobic002G200700 Sobic007G062200--Sobic002G200700 Sobic007G062200--Sobic008G077500 Sobic004G207400 Sobic004G207400 Sobic007G062200--Sobic004G207400 Sobic001G263100 Sobic001G263100 Sobic003G139500--Sobic001G263100 Sobic004G322700 Sobic004G322700 Sobic003G139500--Sobic004G322700 Sobic003G139500--Sobic006G161500 Sobic004G322600 Sobic004G322600 Sobic003G139500--Sobic004G322600 Sobic003G139500--Sobic010G104800 Sobic002G162400 Sobic002G162400 Sobic003G139500--Sobic002G162400 Sobic008G038500 Sobic008G038500 Sobic003G139500--Sobic008G038500 Sobic001G331600 Sobic001G331600 Sobic003G139500--Sobic001G331600 Sobic003G139500--Sobic001G043000 Sobic001G112900 Sobic001G112900 Sobic001G313000--Sobic001G112900 Sobic001G104900 Sobic001G104900 Sobic001G313000--Sobic001G104900 Sobic003G339200 Sobic003G339200 Sobic001G313000--Sobic003G339200 Sobic004G344600 Sobic004G344600 Sobic001G313000--Sobic004G344600 Sobic007G121300 Sobic007G121300 Sobic001G313000--Sobic007G121300 Sobic003G304300 Sobic003G304300 Sobic001G313000--Sobic003G304300 Sobic003G340300 Sobic003G340300 Sobic001G313000--Sobic003G340300 Sobic003G188200 Sobic003G188200 Sobic001G313000--Sobic003G188200 Sobic010G183600 Sobic010G183600 Sobic001G313000--Sobic010G183600 Sobic009G016000 Sobic009G016000 Sobic004G220700--Sobic009G016000 Sobic006G099700 Sobic006G099700 Sobic004G220700--Sobic006G099700 Sobic004G060832 Sobic004G060832 Sobic004G220700--Sobic004G060832 Sobic003G356900 Sobic003G356900 Sobic004G220700--Sobic003G356900 Sobic002G358800 Sobic002G358800 Sobic004G220700--Sobic002G358800 Sobic010G104100 Sobic010G104100 Sobic004G220700--Sobic010G104100 Sobic004G084900 Sobic004G084900 Sobic004G220700--Sobic004G084900 Sobic008G025500 Sobic008G025500 Sobic004G220700--Sobic008G025500 Sobic010G232100 Sobic010G232100 Sobic004G220700--Sobic010G232100
Octagon: transcription factors


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