Gene annotation
Transcriptome id Sobic.004G220700.1
Synonym PAL, PAL1,Phenylalanine ammonia-lyase, ATPAL1, Sb04g026560
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
Lyase (PubMedID : 30367619)
phenylalanine ammonia-lyase, putative, expressed
UniProt C5XXU3
Pfam PF00221
Panther DB PTHR10362 PTHR10362:SF16
NCBI CDD -
KEGG Orthology K10775; phenylalanine ammonia-lyase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G37040 : PHE ammonia lyase 1
RAP-DB (Rice) LOC_Os02g41680.1 : phenylalanine ammonia-lyase, putative, expressed
MaizeGDB (Corn) Zm00025a021097 , Zm00025a021100 , Zm00025a021102 , Zm00025a021099 , Zm00025a032035 , Zm00025a032034 , Zm00025a047442 , Zm00025a032030 , Zm00025a007342 , Zm00025a010654 , Zm00025a010653
Brachypodium KQJ83619 , KQK00414 , KQK00065 , KQK00064 , KQK00416 , KQK00417 , KQK00357 , KQK00415
Barley HORVU0Hr1G016330.10 , HORVU6Hr1G058820.1 , HORVU2Hr1G038140.4 , HORVU2Hr1G038140.5 , HORVU2Hr1G038140.2 , HORVU2Hr1G038140.3 , HORVU2Hr1G038140.1 , HORVU2Hr1G089540.1 , HORVU2Hr1G089440.17 , HORVU2Hr1G089440.16 , HORVU2Hr1G089440.15 , HORVU2Hr1G089440.11 , HORVU2Hr1G089440.10 , HORVU2Hr1G089440.9 , HORVU2Hr1G089440.8 , HORVU2Hr1G089440.6 , HORVU2Hr1G089440.5 , HORVU2Hr1G089440.4 , HORVU2Hr1G089440.3 , HORVU2Hr1G089440.2 , HORVU2Hr1G089440.1 , HORVU6Hr1G058840.1 , HORVU1Hr1G022060.1 , HORVU1Hr1G022060.2 , HORVU2Hr1G038120.4 , HORVU2Hr1G038120.5 , HORVU2Hr1G038120.6 , HORVU6Hr1G058820.4 , HORVU6Hr1G058820.3 , HORVU2Hr1G038120.1 , HORVU2Hr1G038120.2 , HORVU2Hr1G038120.3 , HORVU6Hr1G058820.9 , HORVU6Hr1G058820.8 , HORVU6Hr1G058820.7 , HORVU6Hr1G058820.6 , HORVU6Hr1G058820.12 , HORVU6Hr1G058820.5 , HORVU6Hr1G058820.11 , HORVU6Hr1G058820.10 , HORVU0Hr1G016330.3 , HORVU0Hr1G016330.2 , HORVU0Hr1G016330.1 , HORVU6Hr1G058840.2 , HORVU0Hr1G016330.7 , HORVU0Hr1G016330.6 , HORVU0Hr1G016330.5 , HORVU0Hr1G016330.4 , HORVU0Hr1G016330.9 , HORVU0Hr1G016330.8 , HORVU6Hr1G058820.2
Wheat TraesCS1D02G039300 , TraesCS1D02G039400 , TraesCS2D02G377400 , TraesCS2D02G377200 , TraesCS6A02G222900 , TraesCS1B02G048300 , TraesCS2B02G398200 , TraesCS2B02G398000 , TraesCS2B02G398000 , TraesCS1D02G039500 , TraesCS5B02G468300 , TraesCS2D02G377600 , TraesCS4A02G401300 , TraesCS2A02G381000 , TraesCS2A02G381100 , TraesCS2A02G380800 , TraesCS1B02G048400 , TraesCS1B02G048400 , TraesCS1B02G048500 , TraesCS1B02G048500 , TraesCS2B02G398400 , TraesCS2A02G380900 , TraesCS6D02G212200 , TraesCS6D02G212200 , TraesCS2B02G398100 , TraesCS2B02G398300 , TraesCS2B02G398300 , TraesCS6D02G212400 , TraesCS6D02G212400 , TraesCS6D02G212400 , TraesCS3D02G016300 , TraesCS6B02G258400 , TraesCS6B02G258400 , TraesCS6B02G258400 , TraesCS1B02G048100 , TraesCS1B02G048100 , TraesCS1A02G037800 , TraesCS6A02G222800 , TraesCS6B02G258500 , TraesCS6B02G258500 , TraesCS2D02G377500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G016000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@-(PubMedID : 26976818)@soluble inorganic pyrophosphatase, putative, expressed K01507: inorganic pyrophosphatase
2 Sobic.006G099700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@serine hydrolase domain containing protein, expressed -
3 Sobic.004G060832 - -
4 Sobic.003G356900 expressed protein -
5 Sobic.002G358800 interferon-related developmental regulator, putative, expressed -
6 Sobic.010G104100 NF-X1-type zinc finger protein, putative, expressed K12236: transcriptional repressor NF-X1
7 Sobic.004G084900 SPX domain containing protein, putative, expressed -
8 Sobic.008G025500 DUF567 domain containing protein, putative, expressed -
9 Sobic.010G232100 Constitutively expressed genes(PubMedID : 24456189)@ubiquitin family protein, putative, expressed K08770: ubiquitin C
K08770: ubiquitin C
K04551: ubiquitin B
10 Sobic.003G350800 SLT1 protein, putative, expressed -
11 Sobic.010G183600 bZIP transcription factor domain containing protein, expressed K16241: transcription factor HY5
12 Sobic.003G243600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ubiquitin-conjugating enzyme, putative, expressed K06689: UBE2D, UBC4, ubiquitin-conjugating enzyme E2 D
13 Sobic.003G139500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CDPK - CBL-interacting protein kinase 1(PubMedID : 31721651)@Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.9 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K07198: PRKAA, 5'-AMP-activated protein kinase, catalytic alpha subunit
14 Sobic.004G321900 26S protease regulatory subunit 7, putative, expressed K03061: PSMC2, 26S proteasome regulatory subunit T1
15 Sobic.003G130800 pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase
16 Sobic.010G230500 expressed protein -
17 Sobic.009G246300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CGMC_MAPKCMGC_2.4 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3
18 Sobic.001G470000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@serine acetyltransferase protein, putative, expressed K00640: serine O-acetyltransferase
19 Sobic.006G180200 transmembrane amino acid transporter protein, putative, expressed K14209: SLC36A, solute carrier family 36 (proton-coupled amino acid transporter)
20 Sobic.006G228300 ethylene-responsive protein related, putative, expressed -


Gene co-expression network
sample Sobic004G220700 Sobic004G220700 Sobic009G016000 Sobic009G016000 Sobic004G220700--Sobic009G016000 Sobic006G099700 Sobic006G099700 Sobic004G220700--Sobic006G099700 Sobic004G060832 Sobic004G060832 Sobic004G220700--Sobic004G060832 Sobic003G356900 Sobic003G356900 Sobic004G220700--Sobic003G356900 Sobic002G358800 Sobic002G358800 Sobic004G220700--Sobic002G358800 Sobic010G104100 Sobic010G104100 Sobic004G220700--Sobic010G104100 Sobic004G084900 Sobic004G084900 Sobic004G220700--Sobic004G084900 Sobic008G025500 Sobic008G025500 Sobic004G220700--Sobic008G025500 Sobic010G232100 Sobic010G232100 Sobic004G220700--Sobic010G232100 Sobic003G139500 Sobic003G139500 Sobic009G016000--Sobic003G139500 Sobic009G246300 Sobic009G246300 Sobic009G016000--Sobic009G246300 Sobic010G183600 Sobic010G183600 Sobic009G016000--Sobic010G183600 Sobic008G180800 Sobic008G180800 Sobic009G016000--Sobic008G180800 Sobic001G043000 Sobic001G043000 Sobic009G016000--Sobic001G043000 Sobic007G121300 Sobic007G121300 Sobic009G016000--Sobic007G121300 Sobic003G428600 Sobic003G428600 Sobic009G016000--Sobic003G428600 Sobic001G331600 Sobic001G331600 Sobic009G016000--Sobic001G331600 Sobic010G104700 Sobic010G104700 Sobic009G016000--Sobic010G104700 Sobic006G099700--Sobic008G025500 Sobic007G088000 Sobic007G088000 Sobic006G099700--Sobic007G088000 Sobic006G099700--Sobic010G232100 Sobic010G165500 Sobic010G165500 Sobic006G099700--Sobic010G165500 Sobic001G393500 Sobic001G393500 Sobic006G099700--Sobic001G393500 Sobic004G330700 Sobic004G330700 Sobic006G099700--Sobic004G330700 Sobic003G279300 Sobic003G279300 Sobic006G099700--Sobic003G279300 Sobic001G499300 Sobic001G499300 Sobic006G099700--Sobic001G499300 Sobic004G187900 Sobic004G187900 Sobic006G099700--Sobic004G187900 Sobic003G130800 Sobic003G130800 Sobic004G060832--Sobic003G130800 Sobic004G060832--Sobic008G025500 Sobic001G064500 Sobic001G064500 Sobic004G060832--Sobic001G064500 Sobic001G482100 Sobic001G482100 Sobic004G060832--Sobic001G482100 Sobic004G060832--Sobic006G099700 Sobic008G059200 Sobic008G059200 Sobic004G060832--Sobic008G059200 Sobic001G034100 Sobic001G034100 Sobic004G060832--Sobic001G034100 Sobic004G060832--Sobic004G220700 Sobic004G060832--Sobic010G232100 Sobic003G356900--Sobic004G220700 Sobic003G356900--Sobic006G099700 Sobic003G356900--Sobic010G232100 Sobic003G356900--Sobic002G358800 Sobic002G297700 Sobic002G297700 Sobic003G356900--Sobic002G297700 Sobic003G356900--Sobic010G183600 Sobic003G356900--Sobic009G016000 Sobic007G137600 Sobic007G137600 Sobic003G356900--Sobic007G137600 Sobic008G110300 Sobic008G110300 Sobic003G356900--Sobic008G110300 Sobic001G333600 Sobic001G333600 Sobic002G358800--Sobic001G333600 Sobic001G328200 Sobic001G328200 Sobic002G358800--Sobic001G328200 Sobic002G217700 Sobic002G217700 Sobic002G358800--Sobic002G217700 Sobic009G258100 Sobic009G258100 Sobic002G358800--Sobic009G258100 Sobic010G230500 Sobic010G230500 Sobic002G358800--Sobic010G230500 Sobic003G350800 Sobic003G350800 Sobic002G358800--Sobic003G350800 Sobic001G031600 Sobic001G031600 Sobic002G358800--Sobic001G031600 Sobic002G358400 Sobic002G358400 Sobic002G358800--Sobic002G358400 Sobic006G092400 Sobic006G092400 Sobic002G358800--Sobic006G092400 Sobic010G104100--Sobic004G330700 Sobic009G185800 Sobic009G185800 Sobic010G104100--Sobic009G185800 Sobic004G049900 Sobic004G049900 Sobic010G104100--Sobic004G049900 Sobic002G333600 Sobic002G333600 Sobic010G104100--Sobic002G333600 Sobic009G203100 Sobic009G203100 Sobic010G104100--Sobic009G203100 Sobic003G253000 Sobic003G253000 Sobic010G104100--Sobic003G253000 Sobic009G174900 Sobic009G174900 Sobic010G104100--Sobic009G174900 Sobic002G204100 Sobic002G204100 Sobic010G104100--Sobic002G204100 Sobic010G104100--Sobic003G130800 Sobic003G076900 Sobic003G076900 Sobic004G084900--Sobic003G076900 Sobic004G084900--Sobic004G220700 Sobic004G084900--Sobic010G104100 Sobic004G084900--Sobic006G099700 Sobic004G084900--Sobic009G016000 Sobic010G083500 Sobic010G083500 Sobic004G084900--Sobic010G083500 Sobic010G185200 Sobic010G185200 Sobic004G084900--Sobic010G185200 Sobic007G211900 Sobic007G211900 Sobic004G084900--Sobic007G211900 Sobic004G084900--Sobic003G356900 Sobic008G025500--Sobic006G099700 Sobic008G025500--Sobic010G232100 Sobic008G025500--Sobic007G088000 Sobic003G279500 Sobic003G279500 Sobic008G025500--Sobic003G279500 Sobic008G025500--Sobic004G187900 Sobic003G377900 Sobic003G377900 Sobic008G025500--Sobic003G377900 Sobic008G025500--Sobic003G279300 Sobic003G288600 Sobic003G288600 Sobic008G025500--Sobic003G288600 Sobic002G261100 Sobic002G261100 Sobic008G025500--Sobic002G261100 Sobic004G055200 Sobic004G055200 Sobic010G232100--Sobic004G055200 Sobic010G232100--Sobic008G025500 Sobic010G232100--Sobic003G130800 Sobic010G178200 Sobic010G178200 Sobic010G232100--Sobic010G178200 Sobic006G180200 Sobic006G180200 Sobic010G232100--Sobic006G180200 Sobic009G046600 Sobic009G046600 Sobic010G232100--Sobic009G046600 Sobic003G380000 Sobic003G380000 Sobic010G232100--Sobic003G380000 Sobic004G219300 Sobic004G219300 Sobic010G232100--Sobic004G219300 Sobic010G232100--Sobic006G099700
Octagon: transcription factors


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