Gene annotation
Transcriptome id Sobic.004G084900.1
Synonym ATSPX2, SPX2, Sb04g006990
Functional annotation SPX domain containing protein, putative, expressed
UniProt C5XXW3
Pfam PF03105
Panther DB PTHR10783 PTHR10783:SF44
NCBI CDD KOG1161; Protein involved in vacuolar polyphosphate accumulation, contains SPX domain
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G26660 : SPX domain gene 2
RAP-DB (Rice) LOC_Os06g40120.1 : SPX domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a034612 , Zm00025a051282
Brachypodium KQK17766 , KQJ93917
Barley HORVU7Hr1G089910.1 , HORVU7Hr1G089910.2
Wheat TraesCS7B02G277700 , TraesCS7A02G376200 , TraesCS7D02G372600
Populus -


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cDNA sequences
Sobic.004G084900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G076900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@"Sulfoquinovosyldiacylglycerol 2, UDP-glycosyltransferase SQD2 (At)"(PubMedID : 27208977)@glycosyl transferase, group 1 domain containing protein, expressed K06119: sulfoquinovosyltransferase
2 Sobic.004G220700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Lyase(PubMedID : 30367619)@phenylalanine ammonia-lyase, putative, expressed K10775: phenylalanine ammonia-lyase
3 Sobic.010G104100 NF-X1-type zinc finger protein, putative, expressed K12236: transcriptional repressor NF-X1
4 Sobic.006G099700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@serine hydrolase domain containing protein, expressed -
5 Sobic.009G016000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@-(PubMedID : 26976818)@soluble inorganic pyrophosphatase, putative, expressed K01507: inorganic pyrophosphatase
6 Sobic.010G083500 pyridine nucleotide-disulphide oxidoreductase domain containing protein, expressed K17872: NDC1, demethylphylloquinone reductase
7 Sobic.010G185200 SPX domain containing protein, putative, expressed -
8 Sobic.007G211900 mapped into a stay green mQTL (QSTG meta2.7)(PubMedID : 24655390)@"1,2-diacylglycerol 3-beta-galactosyltransferase MGD2 (At)"(PubMedID : 27208977)@MGD2, putative, expressed K03715: 1,2-diacylglycerol 3-beta-galactosyltransferase
9 Sobic.003G356900 expressed protein -
10 Sobic.010G165500 ABC-2 type transporter, putative, expressed -
11 Sobic.008G025500 DUF567 domain containing protein, putative, expressed -
12 Sobic.010G183600 bZIP transcription factor domain containing protein, expressed K16241: transcription factor HY5
13 Sobic.003G279300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phosphoethanolamine/phosphocholine phosphatase, putative, expressed K06124: phosphoethanolamine/phosphocholine phosphatase
14 Sobic.009G203100 expressed protein -
15 Sobic.004G330700 CAF1 family ribonuclease containing protein, putative, expressed K12581: CNOT7_8, CAF1, CCR4-NOT transcription complex subunit 7/8
16 Sobic.003G112900 expressed protein -
17 Sobic.010G278000 expressed protein -
18 Sobic.010G232100 Constitutively expressed genes(PubMedID : 24456189)@ubiquitin family protein, putative, expressed K08770: ubiquitin C
K08770: ubiquitin C
K04551: ubiquitin B
19 Sobic.005G176100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@mannose-6-phosphate isomerase, putative, expressed K01809: manA, mannose-6-phosphate isomerase
20 Sobic.001G013500 DNA-directed RNA polymerases I, II, and III subunit RPABC3, putative, expressed K03016: RPB8, DNA-directed RNA polymerases I, II, and III subunit RPABC3


Gene co-expression network
sample Sobic004G084900 Sobic004G084900 Sobic003G076900 Sobic003G076900 Sobic004G084900--Sobic003G076900 Sobic004G220700 Sobic004G220700 Sobic004G084900--Sobic004G220700 Sobic010G104100 Sobic010G104100 Sobic004G084900--Sobic010G104100 Sobic006G099700 Sobic006G099700 Sobic004G084900--Sobic006G099700 Sobic009G016000 Sobic009G016000 Sobic004G084900--Sobic009G016000 Sobic010G083500 Sobic010G083500 Sobic004G084900--Sobic010G083500 Sobic010G185200 Sobic010G185200 Sobic004G084900--Sobic010G185200 Sobic007G211900 Sobic007G211900 Sobic004G084900--Sobic007G211900 Sobic003G356900 Sobic003G356900 Sobic004G084900--Sobic003G356900 Sobic003G076900--Sobic007G211900 Sobic003G076900--Sobic010G185200 Sobic003G076900--Sobic004G084900 Sobic010G211400 Sobic010G211400 Sobic003G076900--Sobic010G211400 Sobic001G504100 Sobic001G504100 Sobic003G076900--Sobic001G504100 Sobic001G442300 Sobic001G442300 Sobic003G076900--Sobic001G442300 Sobic003G076900--Sobic010G083500 Sobic010G165500 Sobic010G165500 Sobic003G076900--Sobic010G165500 Sobic001G027300 Sobic001G027300 Sobic003G076900--Sobic001G027300 Sobic004G220700--Sobic009G016000 Sobic004G220700--Sobic006G099700 Sobic004G060832 Sobic004G060832 Sobic004G220700--Sobic004G060832 Sobic004G220700--Sobic003G356900 Sobic002G358800 Sobic002G358800 Sobic004G220700--Sobic002G358800 Sobic004G220700--Sobic010G104100 Sobic004G220700--Sobic004G084900 Sobic008G025500 Sobic008G025500 Sobic004G220700--Sobic008G025500 Sobic010G232100 Sobic010G232100 Sobic004G220700--Sobic010G232100 Sobic004G330700 Sobic004G330700 Sobic010G104100--Sobic004G330700 Sobic009G185800 Sobic009G185800 Sobic010G104100--Sobic009G185800 Sobic004G049900 Sobic004G049900 Sobic010G104100--Sobic004G049900 Sobic002G333600 Sobic002G333600 Sobic010G104100--Sobic002G333600 Sobic009G203100 Sobic009G203100 Sobic010G104100--Sobic009G203100 Sobic003G253000 Sobic003G253000 Sobic010G104100--Sobic003G253000 Sobic009G174900 Sobic009G174900 Sobic010G104100--Sobic009G174900 Sobic002G204100 Sobic002G204100 Sobic010G104100--Sobic002G204100 Sobic003G130800 Sobic003G130800 Sobic010G104100--Sobic003G130800 Sobic006G099700--Sobic008G025500 Sobic007G088000 Sobic007G088000 Sobic006G099700--Sobic007G088000 Sobic006G099700--Sobic010G232100 Sobic006G099700--Sobic010G165500 Sobic001G393500 Sobic001G393500 Sobic006G099700--Sobic001G393500 Sobic006G099700--Sobic004G330700 Sobic003G279300 Sobic003G279300 Sobic006G099700--Sobic003G279300 Sobic001G499300 Sobic001G499300 Sobic006G099700--Sobic001G499300 Sobic004G187900 Sobic004G187900 Sobic006G099700--Sobic004G187900 Sobic003G139500 Sobic003G139500 Sobic009G016000--Sobic003G139500 Sobic009G246300 Sobic009G246300 Sobic009G016000--Sobic009G246300 Sobic010G183600 Sobic010G183600 Sobic009G016000--Sobic010G183600 Sobic008G180800 Sobic008G180800 Sobic009G016000--Sobic008G180800 Sobic001G043000 Sobic001G043000 Sobic009G016000--Sobic001G043000 Sobic007G121300 Sobic007G121300 Sobic009G016000--Sobic007G121300 Sobic003G428600 Sobic003G428600 Sobic009G016000--Sobic003G428600 Sobic001G331600 Sobic001G331600 Sobic009G016000--Sobic001G331600 Sobic010G104700 Sobic010G104700 Sobic009G016000--Sobic010G104700 Sobic010G083500--Sobic010G165500 Sobic006G123300 Sobic006G123300 Sobic010G083500--Sobic006G123300 Sobic010G050800 Sobic010G050800 Sobic010G083500--Sobic010G050800 Sobic010G083500--Sobic010G232100 Sobic010G083500--Sobic007G088000 Sobic010G277800 Sobic010G277800 Sobic010G083500--Sobic010G277800 Sobic004G272700 Sobic004G272700 Sobic010G083500--Sobic004G272700 Sobic010G083500--Sobic009G185800 Sobic001G357300 Sobic001G357300 Sobic010G083500--Sobic001G357300 Sobic003G183600 Sobic003G183600 Sobic010G185200--Sobic003G183600 Sobic001G342400 Sobic001G342400 Sobic010G185200--Sobic001G342400 Sobic006G086700 Sobic006G086700 Sobic010G185200--Sobic006G086700 Sobic001G234900 Sobic001G234900 Sobic010G185200--Sobic001G234900 Sobic010G185200--Sobic001G504100 Sobic003G327900 Sobic003G327900 Sobic010G185200--Sobic003G327900 Sobic010G185200--Sobic003G076900 Sobic006G122800 Sobic006G122800 Sobic010G185200--Sobic006G122800 Sobic001G379400 Sobic001G379400 Sobic010G185200--Sobic001G379400 Sobic007G211900--Sobic003G076900 Sobic007G211900--Sobic001G442300 Sobic007G211900--Sobic010G185200 Sobic007G211900--Sobic001G027300 Sobic007G190700 Sobic007G190700 Sobic007G211900--Sobic007G190700 Sobic007G211900--Sobic001G504100 Sobic001G259100 Sobic001G259100 Sobic007G211900--Sobic001G259100 Sobic007G211900--Sobic010G211400 Sobic007G211900--Sobic003G183600 Sobic003G356900--Sobic004G220700 Sobic003G356900--Sobic006G099700 Sobic003G356900--Sobic010G232100 Sobic003G356900--Sobic002G358800 Sobic002G297700 Sobic002G297700 Sobic003G356900--Sobic002G297700 Sobic003G356900--Sobic010G183600 Sobic003G356900--Sobic009G016000 Sobic007G137600 Sobic007G137600 Sobic003G356900--Sobic007G137600 Sobic008G110300 Sobic008G110300 Sobic003G356900--Sobic008G110300
Octagon: transcription factors


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