Gene annotation
Transcriptome id Sobic.009G106960.1
Synonym -
Functional annotation -
UniProt A0A1Z5R208
Pfam PF01554
Panther DB PTHR11206 PTHR11206:SF176
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016020; membrane GO:0015297antiporter activity GO:0006855drug transmembrane transport


Orthologs (automatic annotation)
TAIR AT5G52450 : MATE efflux family protein
RAP-DB (Rice) LOC_Os10g20470.1 : MATE efflux family protein, putative, expressed
MaizeGDB (Corn) Zm00025a006950
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G289100 chlorophyll A-B binding protein, putative, expressed -
2 Sobic.003G221700 psbP-related thylakoid lumenal protein 4, chloroplast precursor, putative, expressed -
3 Sobic.001G339100 glucose-6-phosphate 1-dehydrogenase, chloroplast precursor, putative, expressed K00036: G6PD, glucose-6-phosphate 1-dehydrogenase
4 Sobic.004G068300 inorganic H+ pyrophosphatase, putative, expressed K01507: inorganic pyrophosphatase
5 Sobic.001G333000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -
6 Sobic.002G297400 tetratricopeptide repeat domain containing protein, expressed -
7 Sobic.003G444500 radical SAM enzyme, putative, expressed K06941: 23S rRNA (adenine2503-C2)-methyltransferase
8 Sobic.002G004000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@oxygen evolving enhancer protein 3 domain containing protein, expressed K08901: photosystem II oxygen-evolving enhancer protein 3
9 Sobic.002G251400 expressed protein -
10 Sobic.003G286300 GTPase of unknown function domain containing protein, putative, expressed K03978: GTP-binding protein
11 Sobic.002G250100 dehydrogenase, putative, expressed -
12 Sobic.003G055300 -(PubMedID : 29017446)@ultraviolet-B-repressible protein, putative, expressed -
13 Sobic.003G439600 amino acid kinase, putative, expressed K09903: uridylate kinase
14 Sobic.003G245800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phosphoglycerate mutase, putative, expressed -
15 Sobic.001G206200 oxidoreductase, short chain dehydrogenase/reductase family domain containing family, expressed K00218: protochlorophyllide reductase
16 Sobic.002G338000 Chorophyll a/b binding protein CP29.1(PubMedID : 26186930)@Chlorophyll A-B binding protein CP29 LHCB4 (At)(PubMedID : 27208977)@Light harvesting complex-II subunit B4(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08915: light-harvesting complex II chlorophyll a/b binding protein 4
17 Sobic.004G179200 expressed protein -
18 Sobic.001G240000 ribosomal protein L28 protein, putative, expressed K02902: RP-L28, MRPL28, large subunit ribosomal protein L28
19 Sobic.010G109600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@angel, putative, expressed -
20 Sobic.008G072300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -


Gene co-expression network
sample Sobic009G106960 Sobic009G106960 Sobic002G289100 Sobic002G289100 Sobic009G106960--Sobic002G289100 Sobic003G221700 Sobic003G221700 Sobic009G106960--Sobic003G221700 Sobic001G339100 Sobic001G339100 Sobic009G106960--Sobic001G339100 Sobic004G068300 Sobic004G068300 Sobic009G106960--Sobic004G068300 Sobic001G333000 Sobic001G333000 Sobic009G106960--Sobic001G333000 Sobic002G297400 Sobic002G297400 Sobic009G106960--Sobic002G297400 Sobic003G444500 Sobic003G444500 Sobic009G106960--Sobic003G444500 Sobic002G004000 Sobic002G004000 Sobic009G106960--Sobic002G004000 Sobic002G251400 Sobic002G251400 Sobic009G106960--Sobic002G251400 Sobic002G288300 Sobic002G288300 Sobic002G289100--Sobic002G288300 Sobic002G352100 Sobic002G352100 Sobic002G289100--Sobic002G352100 Sobic002G338000 Sobic002G338000 Sobic002G289100--Sobic002G338000 Sobic003G055300 Sobic003G055300 Sobic002G289100--Sobic003G055300 Sobic010G000500 Sobic010G000500 Sobic002G289100--Sobic010G000500 Sobic001G206200 Sobic001G206200 Sobic002G289100--Sobic001G206200 Sobic002G414400 Sobic002G414400 Sobic002G289100--Sobic002G414400 Sobic001G268850 Sobic001G268850 Sobic002G289100--Sobic001G268850 Sobic009G165200 Sobic009G165200 Sobic002G289100--Sobic009G165200 Sobic003G221700--Sobic001G333000 Sobic006G111600 Sobic006G111600 Sobic003G221700--Sobic006G111600 Sobic004G179200 Sobic004G179200 Sobic003G221700--Sobic004G179200 Sobic003G330100 Sobic003G330100 Sobic003G221700--Sobic003G330100 Sobic003G221700--Sobic002G251400 Sobic002G131700 Sobic002G131700 Sobic003G221700--Sobic002G131700 Sobic003G245800 Sobic003G245800 Sobic003G221700--Sobic003G245800 Sobic009G234200 Sobic009G234200 Sobic003G221700--Sobic009G234200 Sobic008G072300 Sobic008G072300 Sobic003G221700--Sobic008G072300 Sobic009G028400 Sobic009G028400 Sobic001G339100--Sobic009G028400 Sobic007G023300 Sobic007G023300 Sobic001G339100--Sobic007G023300 Sobic001G407900 Sobic001G407900 Sobic001G339100--Sobic001G407900 Sobic001G006000 Sobic001G006000 Sobic001G339100--Sobic001G006000 Sobic007G178500 Sobic007G178500 Sobic001G339100--Sobic007G178500 Sobic005G021600 Sobic005G021600 Sobic001G339100--Sobic005G021600 Sobic008G063500 Sobic008G063500 Sobic001G339100--Sobic008G063500 Sobic001G339100--Sobic003G221700 Sobic006G197700 Sobic006G197700 Sobic001G339100--Sobic006G197700 Sobic004G234200 Sobic004G234200 Sobic004G068300--Sobic004G234200 Sobic001G041800 Sobic001G041800 Sobic004G068300--Sobic001G041800 Sobic002G030200 Sobic002G030200 Sobic004G068300--Sobic002G030200 Sobic001G531200 Sobic001G531200 Sobic004G068300--Sobic001G531200 Sobic008G117400 Sobic008G117400 Sobic004G068300--Sobic008G117400 Sobic003G030900 Sobic003G030900 Sobic004G068300--Sobic003G030900 Sobic006G222700 Sobic006G222700 Sobic004G068300--Sobic006G222700 Sobic010G022100 Sobic010G022100 Sobic004G068300--Sobic010G022100 Sobic004G068300--Sobic001G206200 Sobic001G333000--Sobic003G221700 Sobic002G305700 Sobic002G305700 Sobic001G333000--Sobic002G305700 Sobic001G333000--Sobic001G531200 Sobic010G095200 Sobic010G095200 Sobic001G333000--Sobic010G095200 Sobic006G248200 Sobic006G248200 Sobic001G333000--Sobic006G248200 Sobic001G240000 Sobic001G240000 Sobic001G333000--Sobic001G240000 Sobic003G386300 Sobic003G386300 Sobic001G333000--Sobic003G386300 Sobic001G333000--Sobic002G251400 Sobic001G333000--Sobic002G297400 Sobic002G297400--Sobic004G179200 Sobic006G055800 Sobic006G055800 Sobic002G297400--Sobic006G055800 Sobic001G469933 Sobic001G469933 Sobic002G297400--Sobic001G469933 Sobic006G256600 Sobic006G256600 Sobic002G297400--Sobic006G256600 Sobic001G122400 Sobic001G122400 Sobic002G297400--Sobic001G122400 Sobic005G184300 Sobic005G184300 Sobic002G297400--Sobic005G184300 Sobic003G324700 Sobic003G324700 Sobic002G297400--Sobic003G324700 Sobic003G439000 Sobic003G439000 Sobic002G297400--Sobic003G439000 Sobic006G107600 Sobic006G107600 Sobic002G297400--Sobic006G107600 Sobic001G148200 Sobic001G148200 Sobic003G444500--Sobic001G148200 Sobic003G444500--Sobic003G330100 Sobic003G444500--Sobic004G179200 Sobic003G444500--Sobic002G251400 Sobic009G042200 Sobic009G042200 Sobic003G444500--Sobic009G042200 Sobic003G444500--Sobic003G221700 Sobic003G084500 Sobic003G084500 Sobic003G444500--Sobic003G084500 Sobic003G444500--Sobic002G131700 Sobic004G250200 Sobic004G250200 Sobic003G444500--Sobic004G250200 Sobic004G055600 Sobic004G055600 Sobic002G004000--Sobic004G055600 Sobic006G204100 Sobic006G204100 Sobic002G004000--Sobic006G204100 Sobic001G120000 Sobic001G120000 Sobic002G004000--Sobic001G120000 Sobic004G017200 Sobic004G017200 Sobic002G004000--Sobic004G017200 Sobic002G004000--Sobic003G030900 Sobic002G004000--Sobic001G240000 Sobic002G004000--Sobic002G305700 Sobic002G004000--Sobic003G221700 Sobic002G004000--Sobic001G333000 Sobic001G040000 Sobic001G040000 Sobic002G251400--Sobic001G040000 Sobic004G164100 Sobic004G164100 Sobic002G251400--Sobic004G164100 Sobic002G251400--Sobic001G240000 Sobic002G251400--Sobic003G386300 Sobic002G251400--Sobic001G122400 Sobic004G335800 Sobic004G335800 Sobic002G251400--Sobic004G335800 Sobic001G527100 Sobic001G527100 Sobic002G251400--Sobic001G527100 Sobic007G013400 Sobic007G013400 Sobic002G251400--Sobic007G013400 Sobic003G295800 Sobic003G295800 Sobic002G251400--Sobic003G295800
Octagon: transcription factors


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