Gene annotation
Transcriptome id Sobic.009G153700.1
Synonym Sb09g021720, HDA08, ATHDA8, HDA8
Functional annotation expressed high in San Chi San (an efficient nitrogen user) (PubMedID : 28697783)
histone deacetylase 8( (PubMedID : 26759170,(PubMedID : 24597475)
histone deacetylase, putative, expressed
UniProt C5YYR7
Pfam PF00850
Panther DB PTHR10625 PTHR10625:SF121
NCBI CDD KOG1344; Predicted histone deacetylase
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G08460 : histone deacetylase 8
RAP-DB (Rice) LOC_Os05g36920.1 : histone deacetylase, putative, expressed
MaizeGDB (Corn) Zm00025a037278 , Zm00025a037258
Brachypodium KQK06033
Barley HORVU1Hr1G074110.1
Wheat TraesCS1B02G284500 , TraesCS1A02G275300 , TraesCS1D02G274900 , TraesCS1D02G274900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G194200 expressed protein -
2 Sobic.004G356300 expressed protein -
3 Sobic.001G176900 mTERF family protein, expressed K15032: mTERF domain-containing protein, mitochondrial
4 Sobic.010G134100 mitochondrial glycoprotein, putative, expressed K15414: complement component 1 Q subcomponent-binding protein, mitochondrial
5 Sobic.001G129400 ribosomal protein-related, putative, expressed K02970: RP-S21, MRPS21, small subunit ribosomal protein S21
6 Sobic.001G352800 peptidase, T1 family, putative, expressed K02726: 20S proteasome subunit alpha 2
7 Sobic.003G075200 mitochondrial glycoprotein, putative, expressed K15414: complement component 1 Q subcomponent-binding protein, mitochondrial
8 Sobic.010G258000 peptidyl-prolyl cis-trans isomerase, putative, expressed K01802: peptidylprolyl isomerase
9 Sobic.002G261700 expressed protein K14001: SIL1, nucleotide exchange factor SIL1
10 Sobic.001G473400 NADH dehydrogenase 1 alpha subcomplex subunit 13, putative, expressed K11353: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 13
11 Sobic.008G057900 OsAPx6 - Stromal Ascorbate Peroxidase encoding gene 5,8, expressed K00434: L-ascorbate peroxidase
12 Sobic.005G110526 - -
13 Sobic.004G106700 WD domain, G-beta repeat domain containing protein, expressed K13341: PEX7, peroxin-7
14 Sobic.002G090500 calreticulin precursor protein, putative, expressed K08057: calreticulin
15 Sobic.001G060300 expressed protein -
16 Sobic.004G007700 pentatricopeptide, putative, expressed -
17 Sobic.002G387800 - K12456: anaphase-promoting complex subunit 13
18 Sobic.001G198200 CRP3 - Cysteine-rich family protein precursor, expressed -
19 Sobic.009G016500 expressed protein -
20 Sobic.007G119600 clathrin adaptor complex small chain domain containing protein, expressed K12403: AP-4 complex subunit sigma-1


Gene co-expression network
sample Sobic009G153700 Sobic009G153700 Sobic010G194200 Sobic010G194200 Sobic009G153700--Sobic010G194200 Sobic004G356300 Sobic004G356300 Sobic009G153700--Sobic004G356300 Sobic001G176900 Sobic001G176900 Sobic009G153700--Sobic001G176900 Sobic010G134100 Sobic010G134100 Sobic009G153700--Sobic010G134100 Sobic001G129400 Sobic001G129400 Sobic009G153700--Sobic001G129400 Sobic001G352800 Sobic001G352800 Sobic009G153700--Sobic001G352800 Sobic003G075200 Sobic003G075200 Sobic009G153700--Sobic003G075200 Sobic010G258000 Sobic010G258000 Sobic009G153700--Sobic010G258000 Sobic002G261700 Sobic002G261700 Sobic009G153700--Sobic002G261700 Sobic010G194200--Sobic001G129400 Sobic001G060300 Sobic001G060300 Sobic010G194200--Sobic001G060300 Sobic003G326900 Sobic003G326900 Sobic010G194200--Sobic003G326900 Sobic001G451901 Sobic001G451901 Sobic010G194200--Sobic001G451901 Sobic001G473400 Sobic001G473400 Sobic010G194200--Sobic001G473400 Sobic005G132700 Sobic005G132700 Sobic010G194200--Sobic005G132700 Sobic004G106700 Sobic004G106700 Sobic010G194200--Sobic004G106700 Sobic006G153200 Sobic006G153200 Sobic010G194200--Sobic006G153200 Sobic001G110300 Sobic001G110300 Sobic010G194200--Sobic001G110300 Sobic004G007700 Sobic004G007700 Sobic004G356300--Sobic004G007700 Sobic001G011000 Sobic001G011000 Sobic004G356300--Sobic001G011000 Sobic004G356300--Sobic003G075200 Sobic002G367800 Sobic002G367800 Sobic004G356300--Sobic002G367800 Sobic002G090500 Sobic002G090500 Sobic004G356300--Sobic002G090500 Sobic008G057900 Sobic008G057900 Sobic004G356300--Sobic008G057900 Sobic004G356300--Sobic001G176900 Sobic004G356300--Sobic010G134100 Sobic002G071100 Sobic002G071100 Sobic004G356300--Sobic002G071100 Sobic001G176900--Sobic010G134100 Sobic001G176900--Sobic004G356300 Sobic001G413100 Sobic001G413100 Sobic001G176900--Sobic001G413100 Sobic001G167500 Sobic001G167500 Sobic001G176900--Sobic001G167500 Sobic001G176900--Sobic002G367800 Sobic003G388700 Sobic003G388700 Sobic001G176900--Sobic003G388700 Sobic004G184000 Sobic004G184000 Sobic001G176900--Sobic004G184000 Sobic001G176900--Sobic004G007700 Sobic001G176900--Sobic003G075200 Sobic010G134100--Sobic001G167500 Sobic010G134100--Sobic001G413100 Sobic010G134100--Sobic001G176900 Sobic001G214900 Sobic001G214900 Sobic010G134100--Sobic001G214900 Sobic001G493400 Sobic001G493400 Sobic010G134100--Sobic001G493400 Sobic010G134100--Sobic004G356300 Sobic010G134100--Sobic002G367800 Sobic009G041800 Sobic009G041800 Sobic010G134100--Sobic009G041800 Sobic004G082700 Sobic004G082700 Sobic010G134100--Sobic004G082700 Sobic001G129400--Sobic003G326900 Sobic003G003000 Sobic003G003000 Sobic001G129400--Sobic003G003000 Sobic001G129400--Sobic010G194200 Sobic001G008800 Sobic001G008800 Sobic001G129400--Sobic001G008800 Sobic004G248900 Sobic004G248900 Sobic001G129400--Sobic004G248900 Sobic010G018000 Sobic010G018000 Sobic001G129400--Sobic010G018000 Sobic001G129400--Sobic001G451901 Sobic001G129400--Sobic001G060300 Sobic001G129400--Sobic001G473400 Sobic001G219800 Sobic001G219800 Sobic001G352800--Sobic001G219800 Sobic002G232400 Sobic002G232400 Sobic001G352800--Sobic002G232400 Sobic002G255400 Sobic002G255400 Sobic001G352800--Sobic002G255400 Sobic003G260600 Sobic003G260600 Sobic001G352800--Sobic003G260600 Sobic001G352800--Sobic003G075200 Sobic003G085500 Sobic003G085500 Sobic001G352800--Sobic003G085500 Sobic001G352800--Sobic002G090500 Sobic001G192700 Sobic001G192700 Sobic001G352800--Sobic001G192700 Sobic001G126800 Sobic001G126800 Sobic001G352800--Sobic001G126800 Sobic003G075200--Sobic004G356300 Sobic003G075200--Sobic001G352800 Sobic003G075200--Sobic008G057900 Sobic010G188900 Sobic010G188900 Sobic003G075200--Sobic010G188900 Sobic009G220000 Sobic009G220000 Sobic003G075200--Sobic009G220000 Sobic002G153000 Sobic002G153000 Sobic003G075200--Sobic002G153000 Sobic003G075200--Sobic002G090500 Sobic003G075200--Sobic004G007700 Sobic003G075200--Sobic006G153200 Sobic010G258000--Sobic001G473400 Sobic006G203900 Sobic006G203900 Sobic010G258000--Sobic006G203900 Sobic001G035400 Sobic001G035400 Sobic010G258000--Sobic001G035400 Sobic001G073600 Sobic001G073600 Sobic010G258000--Sobic001G073600 Sobic010G258000--Sobic003G388700 Sobic009G016500 Sobic009G016500 Sobic010G258000--Sobic009G016500 Sobic003G170300 Sobic003G170300 Sobic010G258000--Sobic003G170300 Sobic008G136800 Sobic008G136800 Sobic010G258000--Sobic008G136800 Sobic007G119600 Sobic007G119600 Sobic010G258000--Sobic007G119600 Sobic004G282700 Sobic004G282700 Sobic002G261700--Sobic004G282700 Sobic002G180300 Sobic002G180300 Sobic002G261700--Sobic002G180300 Sobic002G261700--Sobic009G016500 Sobic001G347901 Sobic001G347901 Sobic002G261700--Sobic001G347901 Sobic003G322300 Sobic003G322300 Sobic002G261700--Sobic003G322300 Sobic007G044400 Sobic007G044400 Sobic002G261700--Sobic007G044400 Sobic003G333800 Sobic003G333800 Sobic002G261700--Sobic003G333800 Sobic002G101000 Sobic002G101000 Sobic002G261700--Sobic002G101000 Sobic002G261700--Sobic003G170300
Octagon: transcription factors


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