Gene annotation
Transcriptome id Sobic.009G243600.1
Synonym GATA18, MNP, Sb09g029510, HAN
Functional annotation GATA zinc finger domain containing protein, expressed
UniProt C5YWE1
Pfam PF00320
Panther DB PTHR10071 PTHR10071:SF156
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0006355regulation of transcription, DNA-templated GO:0003700DNA-binding transcription factor activity


Orthologs (automatic annotation)
TAIR AT3G50870 : GATA type zinc finger transcription factor family protein
RAP-DB (Rice) LOC_Os05g50270.1 : GATA zinc finger domain containing protein, expressed
MaizeGDB (Corn) Zm00025a044687 , Zm00025a036691
Brachypodium KQK04650
Barley HORVU3Hr1G059870.2 , HORVU3Hr1G059870.3 , HORVU1Hr1G091450.2 , HORVU1Hr1G091450.3 , HORVU1Hr1G091450.1
Wheat TraesCS1B02G448200 , TraesCS3B02G269000 , TraesCS1A02G418200 , TraesCS3D02G241100 , TraesCS3A02G240800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G199500 expressed protein -
2 Sobic.002G250300 dehydrogenase, putative, expressed -
3 Sobic.009G058600 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in root"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed -
4 Sobic.003G419300 xylanase inhibitor, putative, expressed -
5 Sobic.008G169300 remorin family protein, putative, expressed -
6 Sobic.003G070500 expressed protein -
7 Sobic.003G019400 expressed protein -
8 Sobic.004G029450 - -
9 Sobic.007G059400 transferase family protein, putative, expressed -
10 Sobic.008G189700 nodulin, putative, expressed -
11 Sobic.006G124200 expressed protein -
12 Sobic.005G220800 receptor-like protein kinase 2 precursor, putative, expressed -
13 Sobic.002G273400 "domain confirmed by Pfam database, expressed in leaf, expression induced by IAA treatment"(PubMedID : 20499123)@OsIAA26 - Auxin-responsive Aux/IAA gene family member, expressed K14484: auxin-responsive protein IAA
14 Sobic.006G130600 TGF-beta receptor, type I/II extracellular region, putative, expressed -
15 Sobic.010G134900 DNA binding protein, putative, expressed -
16 Sobic.001G542200 expansin precursor, putative, expressed -
17 Sobic.003G296100 DUF623 domain containing protein, expressed -
18 Sobic.001G232000 glycine-rich cell wall structural protein 2 precursor, putative, expressed -
19 Sobic.002G334200 CSLF3 - cellulose synthase-like family F@ beta1,3@1,4 glucan synthase, expressed -
20 Sobic.002G334100 CSLF3 - cellulose synthase-like family F@ beta1,3@1,4 glucan synthase, expressed -


Gene co-expression network
sample Sobic009G243600 Sobic009G243600 Sobic010G199500 Sobic010G199500 Sobic009G243600--Sobic010G199500 Sobic002G250300 Sobic002G250300 Sobic009G243600--Sobic002G250300 Sobic009G058600 Sobic009G058600 Sobic009G243600--Sobic009G058600 Sobic003G419300 Sobic003G419300 Sobic009G243600--Sobic003G419300 Sobic008G169300 Sobic008G169300 Sobic009G243600--Sobic008G169300 Sobic003G070500 Sobic003G070500 Sobic009G243600--Sobic003G070500 Sobic003G019400 Sobic003G019400 Sobic009G243600--Sobic003G019400 Sobic004G029450 Sobic004G029450 Sobic009G243600--Sobic004G029450 Sobic007G059400 Sobic007G059400 Sobic009G243600--Sobic007G059400 Sobic010G199500--Sobic002G250300 Sobic002G343100 Sobic002G343100 Sobic010G199500--Sobic002G343100 Sobic008G077900 Sobic008G077900 Sobic010G199500--Sobic008G077900 Sobic009G208700 Sobic009G208700 Sobic010G199500--Sobic009G208700 Sobic001G506800 Sobic001G506800 Sobic010G199500--Sobic001G506800 Sobic010G199500--Sobic008G169300 Sobic009G181600 Sobic009G181600 Sobic010G199500--Sobic009G181600 Sobic010G155800 Sobic010G155800 Sobic010G199500--Sobic010G155800 Sobic010G199500--Sobic009G058600 Sobic002G250300--Sobic002G343100 Sobic002G250300--Sobic010G199500 Sobic002G250300--Sobic009G181600 Sobic002G250300--Sobic009G208700 Sobic004G322100 Sobic004G322100 Sobic002G250300--Sobic004G322100 Sobic006G092700 Sobic006G092700 Sobic002G250300--Sobic006G092700 Sobic004G323300 Sobic004G323300 Sobic002G250300--Sobic004G323300 Sobic004G271800 Sobic004G271800 Sobic002G250300--Sobic004G271800 Sobic010G028100 Sobic010G028100 Sobic002G250300--Sobic010G028100 Sobic004G112200 Sobic004G112200 Sobic009G058600--Sobic004G112200 Sobic009G058600--Sobic003G419300 Sobic001G232000 Sobic001G232000 Sobic009G058600--Sobic001G232000 Sobic009G058600--Sobic004G323300 Sobic003G324600 Sobic003G324600 Sobic009G058600--Sobic003G324600 Sobic001G542000 Sobic001G542000 Sobic009G058600--Sobic001G542000 Sobic008G035800 Sobic008G035800 Sobic009G058600--Sobic008G035800 Sobic001G542200 Sobic001G542200 Sobic009G058600--Sobic001G542200 Sobic009G058600--Sobic002G343100 Sobic003G419300--Sobic001G232000 Sobic003G419400 Sobic003G419400 Sobic003G419300--Sobic003G419400 Sobic003G419300--Sobic008G035800 Sobic003G419300--Sobic009G058600 Sobic002G239700 Sobic002G239700 Sobic003G419300--Sobic002G239700 Sobic004G214300 Sobic004G214300 Sobic003G419300--Sobic004G214300 Sobic003G419300--Sobic003G324600 Sobic003G419300--Sobic004G112200 Sobic003G419300--Sobic009G208700 Sobic008G169300--Sobic010G199500 Sobic008G169300--Sobic003G324600 Sobic008G169300--Sobic009G058600 Sobic008G169300--Sobic003G419300 Sobic008G169300--Sobic003G019400 Sobic008G169300--Sobic004G112200 Sobic008G169300--Sobic002G250300 Sobic008G169300--Sobic004G214300 Sobic008G169300--Sobic002G239700 Sobic002G123500 Sobic002G123500 Sobic003G070500--Sobic002G123500 Sobic006G227500 Sobic006G227500 Sobic003G070500--Sobic006G227500 Sobic009G221500 Sobic009G221500 Sobic003G070500--Sobic009G221500 Sobic001G430100 Sobic001G430100 Sobic003G070500--Sobic001G430100 Sobic001G062500 Sobic001G062500 Sobic003G070500--Sobic001G062500 Sobic007G050200 Sobic007G050200 Sobic003G070500--Sobic007G050200 Sobic003G070500--Sobic004G323300 Sobic004G209400 Sobic004G209400 Sobic003G070500--Sobic004G209400 Sobic007G090469 Sobic007G090469 Sobic003G070500--Sobic007G090469 Sobic003G019400--Sobic004G214300 Sobic003G019400--Sobic003G419300 Sobic010G090100 Sobic010G090100 Sobic003G019400--Sobic010G090100 Sobic001G197800 Sobic001G197800 Sobic003G019400--Sobic001G197800 Sobic001G261400 Sobic001G261400 Sobic003G019400--Sobic001G261400 Sobic006G124200 Sobic006G124200 Sobic003G019400--Sobic006G124200 Sobic009G102400 Sobic009G102400 Sobic003G019400--Sobic009G102400 Sobic003G019400--Sobic004G029450 Sobic002G091000 Sobic002G091000 Sobic003G019400--Sobic002G091000 Sobic004G029450--Sobic003G019400 Sobic004G263700 Sobic004G263700 Sobic004G029450--Sobic004G263700 Sobic004G029450--Sobic001G261400 Sobic004G029450--Sobic010G090100 Sobic006G130600 Sobic006G130600 Sobic004G029450--Sobic006G130600 Sobic008G170500 Sobic008G170500 Sobic004G029450--Sobic008G170500 Sobic003G300900 Sobic003G300900 Sobic004G029450--Sobic003G300900 Sobic004G029450--Sobic006G124200 Sobic002G230900 Sobic002G230900 Sobic004G029450--Sobic002G230900 Sobic003G395200 Sobic003G395200 Sobic007G059400--Sobic003G395200 Sobic009G026850 Sobic009G026850 Sobic007G059400--Sobic009G026850 Sobic003G111800 Sobic003G111800 Sobic007G059400--Sobic003G111800 Sobic008G112550 Sobic008G112550 Sobic007G059400--Sobic008G112550 Sobic001G144900 Sobic001G144900 Sobic007G059400--Sobic001G144900 Sobic007G004900 Sobic007G004900 Sobic007G059400--Sobic007G004900 Sobic002G383500 Sobic002G383500 Sobic007G059400--Sobic002G383500 Sobic008G096500 Sobic008G096500 Sobic007G059400--Sobic008G096500 Sobic006G084100 Sobic006G084100 Sobic007G059400--Sobic006G084100
Octagon: transcription factors


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