Gene annotation
Transcriptome id Sobic.009G247700.1
Synonym WRKY27, ATWRKY27, Sb09g029850
Functional annotation WRKY111, expressed
UniProt A0A1B6PAC4
Pfam PF03106
Panther DB PTHR32096 PTHR32096:SF21
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0003700DNA-binding transcription factor activity


Orthologs (automatic annotation)
TAIR AT4G01250 : WRKY family transcription factor
RAP-DB (Rice) LOC_Os05g50700.1 : WRKY111, expressed
MaizeGDB (Corn) Zm00025a009902 , Zm00025a036725
Brachypodium KQJ84349
Barley HORVU1Hr1G092360.1 , HORVU1Hr1G092360.2
Wheat TraesCS1B02G455000 , TraesCS2D02G443000 , TraesCS1D02G431600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G040600 zinc finger, C3HC4 type domain containing protein, expressed K19043: E3 ubiquitin-protein ligase RHF
2 Sobic.006G136800 "shikimate hydroxycinnamoyl transferase, the MYB transcription factor binding domain AACG element"(PubMedID : 24045932)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transferase family protein, putative, expressed K13065: E2.3.1.133, shikimate O-hydroxycinnamoyltransferase
3 Sobic.010G027300 DNA binding protein, putative, expressed -
4 Sobic.006G158400 short-chain dehydrogenase/reductase, putative, expressed K15095: (+)-neomenthol dehydrogenase
5 Sobic.007G204700 expressed protein -
6 Sobic.004G117600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@WRKY39, expressed -
7 Sobic.002G213600 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@OsSAUR38 - Auxin-responsive SAUR gene family member, expressed K14488: SAUR family protein
8 Sobic.002G393600 GDSL-like lipase/acylhydrolase, putative, expressed -
9 Sobic.003G363900 glycosyl hydrolase, putative, expressed K01183: chitinase
10 Sobic.004G340900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsFBX70 - F-box domain containing protein, expressed -
11 Sobic.004G225900 GEM, putative, expressed -
12 Sobic.002G302500 -(PubMedID : 29147737)@serine/threonine-protein kinase receptor precursor, putative, expressed -
13 Sobic.004G212300 determined the crystal structures of SbHCT in its apo-form and ternary complex with shikimate and p-coumaroyl-CoA(PubMedID : 23624856)@"shikimate hydroxycinnamoyl transferase, the MYB transcription factor binding domain AACG element"(PubMedID : 24045932)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transferase family protein, putative, expressed K13065: E2.3.1.133, shikimate O-hydroxycinnamoyltransferase
14 Sobic.001G237900 expansin precursor, putative, expressed -
15 Sobic.010G158500 Zinc finger, C3HC4 type domain containing protein, expressed -
16 Sobic.004G348800 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in root, expression induced by IAA and BR treatments"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed -
17 Sobic.003G016100 expressed protein -
18 Sobic.005G018700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@no apical meristem protein, putative, expressed -
19 Sobic.003G053300 myb-like DNA-binding domain containing protein, putative, expressed K09422: transcription factor MYB, plant
20 Sobic.003G319500 receptor protein kinase, putative, expressed -


Gene co-expression network
sample Sobic009G247700 Sobic009G247700 Sobic002G040600 Sobic002G040600 Sobic009G247700--Sobic002G040600 Sobic006G136800 Sobic006G136800 Sobic009G247700--Sobic006G136800 Sobic010G027300 Sobic010G027300 Sobic009G247700--Sobic010G027300 Sobic006G158400 Sobic006G158400 Sobic009G247700--Sobic006G158400 Sobic007G204700 Sobic007G204700 Sobic009G247700--Sobic007G204700 Sobic004G117600 Sobic004G117600 Sobic009G247700--Sobic004G117600 Sobic002G213600 Sobic002G213600 Sobic009G247700--Sobic002G213600 Sobic002G393600 Sobic002G393600 Sobic009G247700--Sobic002G393600 Sobic003G363900 Sobic003G363900 Sobic009G247700--Sobic003G363900 Sobic004G212300 Sobic004G212300 Sobic002G040600--Sobic004G212300 Sobic001G516600 Sobic001G516600 Sobic002G040600--Sobic001G516600 Sobic004G262500 Sobic004G262500 Sobic002G040600--Sobic004G262500 Sobic010G195500 Sobic010G195500 Sobic002G040600--Sobic010G195500 Sobic007G186100 Sobic007G186100 Sobic002G040600--Sobic007G186100 Sobic003G037800 Sobic003G037800 Sobic002G040600--Sobic003G037800 Sobic003G319500 Sobic003G319500 Sobic002G040600--Sobic003G319500 Sobic005G168800 Sobic005G168800 Sobic002G040600--Sobic005G168800 Sobic002G379200 Sobic002G379200 Sobic002G040600--Sobic002G379200 Sobic004G046200 Sobic004G046200 Sobic006G136800--Sobic004G046200 Sobic002G081600 Sobic002G081600 Sobic006G136800--Sobic002G081600 Sobic003G436700 Sobic003G436700 Sobic006G136800--Sobic003G436700 Sobic001G295200 Sobic001G295200 Sobic006G136800--Sobic001G295200 Sobic001G036900 Sobic001G036900 Sobic006G136800--Sobic001G036900 Sobic004G205100 Sobic004G205100 Sobic006G136800--Sobic004G205100 Sobic004G340900 Sobic004G340900 Sobic006G136800--Sobic004G340900 Sobic001G389000 Sobic001G389000 Sobic006G136800--Sobic001G389000 Sobic001G500000 Sobic001G500000 Sobic006G136800--Sobic001G500000 Sobic003G205600 Sobic003G205600 Sobic010G027300--Sobic003G205600 Sobic001G264000 Sobic001G264000 Sobic010G027300--Sobic001G264000 Sobic004G348800 Sobic004G348800 Sobic010G027300--Sobic004G348800 Sobic003G093700 Sobic003G093700 Sobic010G027300--Sobic003G093700 Sobic003G269600 Sobic003G269600 Sobic010G027300--Sobic003G269600 Sobic010G212500 Sobic010G212500 Sobic010G027300--Sobic010G212500 Sobic002G404100 Sobic002G404100 Sobic010G027300--Sobic002G404100 Sobic001G430100 Sobic001G430100 Sobic010G027300--Sobic001G430100 Sobic004G249000 Sobic004G249000 Sobic010G027300--Sobic004G249000 Sobic008G127933 Sobic008G127933 Sobic006G158400--Sobic008G127933 Sobic008G027600 Sobic008G027600 Sobic006G158400--Sobic008G027600 Sobic001G237900 Sobic001G237900 Sobic006G158400--Sobic001G237900 Sobic010G158500 Sobic010G158500 Sobic006G158400--Sobic010G158500 Sobic006G158400--Sobic007G204700 Sobic003G007600 Sobic003G007600 Sobic006G158400--Sobic003G007600 Sobic010G043900 Sobic010G043900 Sobic006G158400--Sobic010G043900 Sobic001G318500 Sobic001G318500 Sobic006G158400--Sobic001G318500 Sobic003G299300 Sobic003G299300 Sobic006G158400--Sobic003G299300 Sobic007G204700--Sobic006G158400 Sobic001G462700 Sobic001G462700 Sobic007G204700--Sobic001G462700 Sobic007G204700--Sobic010G158500 Sobic007G204700--Sobic008G127933 Sobic007G204700--Sobic001G237900 Sobic005G215400 Sobic005G215400 Sobic007G204700--Sobic005G215400 Sobic004G202400 Sobic004G202400 Sobic007G204700--Sobic004G202400 Sobic008G128200 Sobic008G128200 Sobic007G204700--Sobic008G128200 Sobic007G204700--Sobic004G348800 Sobic007G074200 Sobic007G074200 Sobic004G117600--Sobic007G074200 Sobic002G338250 Sobic002G338250 Sobic004G117600--Sobic002G338250 Sobic009G154200 Sobic009G154200 Sobic004G117600--Sobic009G154200 Sobic008G111500 Sobic008G111500 Sobic004G117600--Sobic008G111500 Sobic004G117600--Sobic002G393600 Sobic009G159400 Sobic009G159400 Sobic004G117600--Sobic009G159400 Sobic004G301300 Sobic004G301300 Sobic004G117600--Sobic004G301300 Sobic002G239200 Sobic002G239200 Sobic004G117600--Sobic002G239200 Sobic004G117600--Sobic006G136800 Sobic001G304100 Sobic001G304100 Sobic002G213600--Sobic001G304100 Sobic004G042000 Sobic004G042000 Sobic002G213600--Sobic004G042000 Sobic003G016100 Sobic003G016100 Sobic002G213600--Sobic003G016100 Sobic002G213600--Sobic003G319500 Sobic003G053300 Sobic003G053300 Sobic002G213600--Sobic003G053300 Sobic002G003800 Sobic002G003800 Sobic002G213600--Sobic002G003800 Sobic004G318700 Sobic004G318700 Sobic002G213600--Sobic004G318700 Sobic010G063000 Sobic010G063000 Sobic002G213600--Sobic010G063000 Sobic001G304201 Sobic001G304201 Sobic002G213600--Sobic001G304201 Sobic002G393600--Sobic007G074200 Sobic002G393600--Sobic002G338250 Sobic002G393600--Sobic004G117600 Sobic002G393600--Sobic008G111500 Sobic001G488000 Sobic001G488000 Sobic002G393600--Sobic001G488000 Sobic009G131400 Sobic009G131400 Sobic002G393600--Sobic009G131400 Sobic003G146400 Sobic003G146400 Sobic002G393600--Sobic003G146400 Sobic006G198800 Sobic006G198800 Sobic002G393600--Sobic006G198800 Sobic002G393600--Sobic006G136800 Sobic003G363900--Sobic003G016100 Sobic003G363900--Sobic002G213600 Sobic008G172600 Sobic008G172600 Sobic003G363900--Sobic008G172600 Sobic003G363900--Sobic004G318700 Sobic003G363900--Sobic004G202400 Sobic003G363900--Sobic004G042000 Sobic003G363900--Sobic001G237900 Sobic002G327300 Sobic002G327300 Sobic003G363900--Sobic002G327300 Sobic009G187200 Sobic009G187200 Sobic003G363900--Sobic009G187200
Octagon: transcription factors


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