Gene annotation
Transcriptome id Sobic.010G021300.2
Synonym Sb10g002030, HIS1-3
Functional annotation SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence. (PubMedID : 27586543)
histone H1, putative, expressed
UniProt A0A1W0VR45
Pfam PF00538
Panther DB PTHR11467 PTHR11467:SF50
NCBI CDD -
KEGG Orthology K11275; histone H1/5
Gene Ontology GO:0006334; nucleosome assembly GO:0005634nucleus GO:0003677DNA binding GO:0000786nucleosome


Orthologs (automatic annotation)
TAIR AT2G18050 : histone H1-3
RAP-DB (Rice) LOC_Os06g04020.1 : histone H1, putative, expressed
MaizeGDB (Corn) Zm00025a050172
Brachypodium -
Barley HORVU2Hr1G094390.1 , HORVU2Hr1G094400.5 , HORVU2Hr1G094400.3
Wheat TraesCS7D02G061400 , TraesCS4A02G423600 , TraesCS7A02G067100 , TraesCS7A02G067000 , TraesCS2A02G397400 , TraesCS2B02G415800 , TraesCS2B02G415900 , TraesCS2A02G397700 , TraesCS2A02G397700 , TraesCS2A02G397600 , TraesCS2D02G395300 , TraesCSU02G218900
Populus -


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cDNA sequences
Sobic.010G021300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G173700 tetraspanin family protein, putative, expressed -
2 Sobic.001G384700 RNA-binding zinc finger protein, putative, expressed -
3 Sobic.005G168400 expressed protein -
4 Sobic.007G152300 homeobox associated leucine zipper, putative, expressed K09338: homeobox-leucine zipper protein
5 Sobic.004G052800 DUF640 domain containing protein, putative, expressed -
6 Sobic.009G173200 Homologous to EPF/EPFL genes in Arabidopsis. Modelling of protein structure.(PubMedID : 23755192)@expressed protein -
7 Sobic.003G302000 expressed protein -
8 Sobic.009G164900 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11251: histone H2A
9 Sobic.001G393401 - -
10 Sobic.006G046600 expressed protein -
11 Sobic.010G190400 ZOS6-05 - C2H2 zinc finger protein, expressed -
12 Sobic.009G011500 expressed protein -
13 Sobic.006G154000 PCF-like (ClassI) Subclade 2 TCP(PubMedID : 21444336)@"TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)."(PubMedID : 27917941)@"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)"(PubMedID : 28383054)@TCP family transcription factor, putative, expressed -
14 Sobic.004G326800 expressed protein -
15 Sobic.001G079900 expressed protein -
16 Sobic.006G232900 expressed protein -
17 Sobic.010G276600 PAZ domain containing protein, putative, expressed K11593: ELF2C, eukaryotic translation initiation factor 2C
18 Sobic.002G216600 "DEP1(Ortholog in rice:Huang et al., 2009(PubMedID : 31659854)@keratin-associated protein 5-4, putative, expressed -
19 Sobic.001G398300 expressed protein -
20 Sobic.010G168700 GDSL-like lipase/acylhydrolase, putative, expressed -


Gene co-expression network
sample Sobic010G021300 Sobic010G021300 Sobic010G173700 Sobic010G173700 Sobic010G021300--Sobic010G173700 Sobic001G384700 Sobic001G384700 Sobic010G021300--Sobic001G384700 Sobic005G168400 Sobic005G168400 Sobic010G021300--Sobic005G168400 Sobic007G152300 Sobic007G152300 Sobic010G021300--Sobic007G152300 Sobic004G052800 Sobic004G052800 Sobic010G021300--Sobic004G052800 Sobic009G173200 Sobic009G173200 Sobic010G021300--Sobic009G173200 Sobic003G302000 Sobic003G302000 Sobic010G021300--Sobic003G302000 Sobic009G164900 Sobic009G164900 Sobic010G021300--Sobic009G164900 Sobic001G393401 Sobic001G393401 Sobic010G021300--Sobic001G393401 Sobic003G406600 Sobic003G406600 Sobic010G173700--Sobic003G406600 Sobic006G046600 Sobic006G046600 Sobic010G173700--Sobic006G046600 Sobic005G032600 Sobic005G032600 Sobic010G173700--Sobic005G032600 Sobic001G079900 Sobic001G079900 Sobic010G173700--Sobic001G079900 Sobic004G359500 Sobic004G359500 Sobic010G173700--Sobic004G359500 Sobic010G173700--Sobic001G384700 Sobic006G022400 Sobic006G022400 Sobic010G173700--Sobic006G022400 Sobic006G185800 Sobic006G185800 Sobic010G173700--Sobic006G185800 Sobic001G113800 Sobic001G113800 Sobic010G173700--Sobic001G113800 Sobic002G216600 Sobic002G216600 Sobic001G384700--Sobic002G216600 Sobic001G384700--Sobic001G079900 Sobic009G141700 Sobic009G141700 Sobic001G384700--Sobic009G141700 Sobic001G384700--Sobic006G046600 Sobic005G204100 Sobic005G204100 Sobic001G384700--Sobic005G204100 Sobic001G384700--Sobic004G052800 Sobic001G384700--Sobic005G168400 Sobic001G379900 Sobic001G379900 Sobic001G384700--Sobic001G379900 Sobic001G434100 Sobic001G434100 Sobic001G384700--Sobic001G434100 Sobic010G168700 Sobic010G168700 Sobic005G168400--Sobic010G168700 Sobic001G143400 Sobic001G143400 Sobic005G168400--Sobic001G143400 Sobic004G003700 Sobic004G003700 Sobic005G168400--Sobic004G003700 Sobic003G319900 Sobic003G319900 Sobic005G168400--Sobic003G319900 Sobic001G393200 Sobic001G393200 Sobic005G168400--Sobic001G393200 Sobic009G047500 Sobic009G047500 Sobic005G168400--Sobic009G047500 Sobic005G199700 Sobic005G199700 Sobic005G168400--Sobic005G199700 Sobic005G168400--Sobic001G379900 Sobic005G168400--Sobic007G152300 Sobic007G152300--Sobic005G168400 Sobic007G152300--Sobic004G003700 Sobic007G152300--Sobic001G143400 Sobic006G154000 Sobic006G154000 Sobic007G152300--Sobic006G154000 Sobic007G152300--Sobic001G384700 Sobic007G152300--Sobic010G168700 Sobic002G050700 Sobic002G050700 Sobic007G152300--Sobic002G050700 Sobic009G185900 Sobic009G185900 Sobic007G152300--Sobic009G185900 Sobic007G152300--Sobic001G379900 Sobic004G052800--Sobic001G079900 Sobic004G052800--Sobic001G384700 Sobic004G052800--Sobic002G216600 Sobic005G177900 Sobic005G177900 Sobic004G052800--Sobic005G177900 Sobic007G197100 Sobic007G197100 Sobic004G052800--Sobic007G197100 Sobic004G052800--Sobic005G204100 Sobic004G052800--Sobic005G032600 Sobic004G012700 Sobic004G012700 Sobic004G052800--Sobic004G012700 Sobic004G052800--Sobic003G302000 Sobic003G045700 Sobic003G045700 Sobic009G173200--Sobic003G045700 Sobic001G207600 Sobic001G207600 Sobic009G173200--Sobic001G207600 Sobic009G172700 Sobic009G172700 Sobic009G173200--Sobic009G172700 Sobic010G231600 Sobic010G231600 Sobic009G173200--Sobic010G231600 Sobic009G173200--Sobic001G379900 Sobic009G173200--Sobic003G302000 Sobic006G014400 Sobic006G014400 Sobic009G173200--Sobic006G014400 Sobic007G165800 Sobic007G165800 Sobic009G173200--Sobic007G165800 Sobic001G518000 Sobic001G518000 Sobic009G173200--Sobic001G518000 Sobic003G302000--Sobic007G165800 Sobic004G274600 Sobic004G274600 Sobic003G302000--Sobic004G274600 Sobic007G163400 Sobic007G163400 Sobic003G302000--Sobic007G163400 Sobic007G170100 Sobic007G170100 Sobic003G302000--Sobic007G170100 Sobic007G180200 Sobic007G180200 Sobic003G302000--Sobic007G180200 Sobic003G356600 Sobic003G356600 Sobic003G302000--Sobic003G356600 Sobic003G302000--Sobic005G199700 Sobic008G097700 Sobic008G097700 Sobic003G302000--Sobic008G097700 Sobic001G286700 Sobic001G286700 Sobic003G302000--Sobic001G286700 Sobic002G007200 Sobic002G007200 Sobic009G164900--Sobic002G007200 Sobic003G380500 Sobic003G380500 Sobic009G164900--Sobic003G380500 Sobic001G216600 Sobic001G216600 Sobic009G164900--Sobic001G216600 Sobic003G356200 Sobic003G356200 Sobic009G164900--Sobic003G356200 Sobic001G217100 Sobic001G217100 Sobic009G164900--Sobic001G217100 Sobic004G229100 Sobic004G229100 Sobic009G164900--Sobic004G229100 Sobic009G011500 Sobic009G011500 Sobic009G164900--Sobic009G011500 Sobic007G195400 Sobic007G195400 Sobic009G164900--Sobic007G195400 Sobic002G157200 Sobic002G157200 Sobic009G164900--Sobic002G157200 Sobic003G023400 Sobic003G023400 Sobic001G393401--Sobic003G023400 Sobic001G393401--Sobic001G384700 Sobic001G393401--Sobic002G216600 Sobic002G060450 Sobic002G060450 Sobic001G393401--Sobic002G060450 Sobic010G190400 Sobic010G190400 Sobic001G393401--Sobic010G190400 Sobic001G393401--Sobic005G204100 Sobic001G184400 Sobic001G184400 Sobic001G393401--Sobic001G184400 Sobic002G049000 Sobic002G049000 Sobic001G393401--Sobic002G049000 Sobic001G393401--Sobic004G052800
Octagon: transcription factors


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