Gene annotation
Transcriptome id Sobic.010G088600.1,Sobic.010G088600.2
Synonym YLS8, Sb10g007680
Functional annotation mitosis protein dim1, putative, expressed
UniProt -
Pfam PF00085 PF02966
Panther DB PTHR12052 PTHR12052 PTHR12052:SF6
NCBI CDD KOG3414; Component of the U4/U6.U5 snRNP/mitosis protein DIM1
KEGG Orthology K12859; TXNL4A, U5 snRNP protein, DIM1 family
Gene Ontology GO:0005681; spliceosomal complex GO:0000398mRNA splicing, via spliceosome GO:0005681spliceosomal complex GO:0000398mRNA splicing, via spliceosome


Orthologs (automatic annotation)
TAIR AT5G08290 : mRNA splicing factor, thioredoxin-like U5 snRNP
RAP-DB (Rice) LOC_Os07g10256.1 : mitosis protein dim1, putative, expressed
MaizeGDB (Corn) Zm00025a006090
Brachypodium KQK05475 , KQJ85424 , KQK10108
Barley HORVU1Hr1G077470.1 , HORVU1Hr1G077470.2 , HORVU1Hr1G077470.4 , HORVU1Hr1G077470.5 , HORVU1Hr1G077470.6 , HORVU1Hr1G077470.7 , HORVU1Hr1G077470.8 , HORVU1Hr1G077470.9 , HORVU1Hr1G077470.10 , HORVU1Hr1G077470.11 , HORVU1Hr1G042920.1
Wheat TraesCS1D02G332500 , TraesCS1D02G158700 , TraesCS2A02G593800 , TraesCS3A02G321600 , TraesCS1B02G178500 , TraesCS3B02G409900 , TraesCS1A02G161900 , TraesCS2B02G590800 , TraesCS1B02G343700 , TraesCS1A02G330100 , TraesCS2D02G560900
Populus -


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cDNA sequences
Sobic.010G088600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G389900 aquaporin SIP2-1, putative, expressed K09875: aquaporin SIP
2 Sobic.009G153600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@NC domain-containing protein, putative, expressed -
3 Sobic.002G196350 - K14011: UBXN6, UBX domain-containing protein 6
4 Sobic.009G149800 subtilisin N-terminal Region family protein, expressed -
5 Sobic.001G066700 GLTP domain containing protein, putative, expressed -
6 Sobic.002G159500 ubiquitin-conjugating enzyme, putative, expressed K10704: ubiquitin-conjugating enzyme E2 variant
7 Sobic.003G403400 zinc finger, C3HC4 type domain containing protein, expressed -
8 Sobic.004G205000 cytosolic Fe-S cluster assembling factor NBP35, putative, expressed -
9 Sobic.003G191500 protein transport protein Sec61 subunit beta, putative, expressed K09481: SEC61B, protein transport protein SEC61 subunit beta
10 Sobic.001G433700 chorismate synthase 2, chloroplast precursor, putative, expressed K01736: chorismate synthase
11 Sobic.010G163600 ras-related protein, putative, expressed K07904: Ras-related protein Rab-11A
12 Sobic.002G187500 hypoxia-responsive family protein, putative, expressed -
13 Sobic.006G062800 OTU-like cysteine protease family protein, putative, expressed -
14 Sobic.002G378401 - -
15 Sobic.001G447100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@ATP8, putative, expressed -
16 Sobic.002G222900 transmembrane protein 50A, putative, expressed -
17 Sobic.004G177700 AIG1, putative, expressed -
18 Sobic.001G148700 signal peptidase complex subunit 1, putative, expressed K12946: signal peptidase complex subunit 1
19 Sobic.004G166500 N-carbamoylputrescine amidohydrolase(PubMedID : 27325899)@Up-regulated by silicon application under drought stress(PubMedID : 24813726)@N-carbamoylputrescine amidase, putative, expressed K12251: N-carbamoylputrescine amidase
20 Sobic.009G070200 Der1-like family domain containing protein, expressed K13989: Derlin-2/3


Gene co-expression network
sample Sobic010G088600 Sobic010G088600 Sobic001G389900 Sobic001G389900 Sobic010G088600--Sobic001G389900 Sobic009G153600 Sobic009G153600 Sobic010G088600--Sobic009G153600 Sobic002G196350 Sobic002G196350 Sobic010G088600--Sobic002G196350 Sobic009G149800 Sobic009G149800 Sobic010G088600--Sobic009G149800 Sobic001G066700 Sobic001G066700 Sobic010G088600--Sobic001G066700 Sobic002G159500 Sobic002G159500 Sobic010G088600--Sobic002G159500 Sobic003G403400 Sobic003G403400 Sobic010G088600--Sobic003G403400 Sobic004G205000 Sobic004G205000 Sobic010G088600--Sobic004G205000 Sobic003G191500 Sobic003G191500 Sobic010G088600--Sobic003G191500 Sobic001G389900--Sobic003G403400 Sobic009G232800 Sobic009G232800 Sobic001G389900--Sobic009G232800 Sobic001G477300 Sobic001G477300 Sobic001G389900--Sobic001G477300 Sobic002G046100 Sobic002G046100 Sobic001G389900--Sobic002G046100 Sobic004G177700 Sobic004G177700 Sobic001G389900--Sobic004G177700 Sobic009G063900 Sobic009G063900 Sobic001G389900--Sobic009G063900 Sobic001G389900--Sobic001G066700 Sobic001G447100 Sobic001G447100 Sobic001G389900--Sobic001G447100 Sobic003G072300 Sobic003G072300 Sobic001G389900--Sobic003G072300 Sobic009G153600--Sobic004G177700 Sobic010G163600 Sobic010G163600 Sobic009G153600--Sobic010G163600 Sobic009G153600--Sobic004G205000 Sobic010G153100 Sobic010G153100 Sobic009G153600--Sobic010G153100 Sobic009G153600--Sobic001G066700 Sobic001G037000 Sobic001G037000 Sobic009G153600--Sobic001G037000 Sobic003G379800 Sobic003G379800 Sobic009G153600--Sobic003G379800 Sobic009G143400 Sobic009G143400 Sobic009G153600--Sobic009G143400 Sobic010G217900 Sobic010G217900 Sobic009G153600--Sobic010G217900 Sobic010G213400 Sobic010G213400 Sobic002G196350--Sobic010G213400 Sobic006G062800 Sobic006G062800 Sobic002G196350--Sobic006G062800 Sobic004G026200 Sobic004G026200 Sobic002G196350--Sobic004G026200 Sobic003G063200 Sobic003G063200 Sobic002G196350--Sobic003G063200 Sobic005G028700 Sobic005G028700 Sobic002G196350--Sobic005G028700 Sobic008G185400 Sobic008G185400 Sobic002G196350--Sobic008G185400 Sobic009G129000 Sobic009G129000 Sobic002G196350--Sobic009G129000 Sobic002G196350--Sobic002G046100 Sobic009G033700 Sobic009G033700 Sobic002G196350--Sobic009G033700 Sobic003G024500 Sobic003G024500 Sobic009G149800--Sobic003G024500 Sobic001G148700 Sobic001G148700 Sobic009G149800--Sobic001G148700 Sobic002G378401 Sobic002G378401 Sobic009G149800--Sobic002G378401 Sobic009G149800--Sobic003G403400 Sobic009G149800--Sobic010G217900 Sobic009G149800--Sobic003G063200 Sobic004G015400 Sobic004G015400 Sobic009G149800--Sobic004G015400 Sobic008G111500 Sobic008G111500 Sobic009G149800--Sobic008G111500 Sobic004G063500 Sobic004G063500 Sobic009G149800--Sobic004G063500 Sobic003G358300 Sobic003G358300 Sobic001G066700--Sobic003G358300 Sobic001G066700--Sobic003G403400 Sobic002G218000 Sobic002G218000 Sobic001G066700--Sobic002G218000 Sobic005G111100 Sobic005G111100 Sobic001G066700--Sobic005G111100 Sobic009G191600 Sobic009G191600 Sobic001G066700--Sobic009G191600 Sobic010G266300 Sobic010G266300 Sobic001G066700--Sobic010G266300 Sobic003G233500 Sobic003G233500 Sobic001G066700--Sobic003G233500 Sobic010G225300 Sobic010G225300 Sobic001G066700--Sobic010G225300 Sobic009G070200 Sobic009G070200 Sobic001G066700--Sobic009G070200 Sobic003G189000 Sobic003G189000 Sobic002G159500--Sobic003G189000 Sobic002G376500 Sobic002G376500 Sobic002G159500--Sobic002G376500 Sobic002G222900 Sobic002G222900 Sobic002G159500--Sobic002G222900 Sobic003G104700 Sobic003G104700 Sobic002G159500--Sobic003G104700 Sobic004G130100 Sobic004G130100 Sobic002G159500--Sobic004G130100 Sobic002G159500--Sobic002G196350 Sobic006G141500 Sobic006G141500 Sobic002G159500--Sobic006G141500 Sobic007G096700 Sobic007G096700 Sobic002G159500--Sobic007G096700 Sobic001G501200 Sobic001G501200 Sobic002G159500--Sobic001G501200 Sobic003G403400--Sobic001G389900 Sobic003G403400--Sobic001G066700 Sobic003G403400--Sobic003G063200 Sobic003G403400--Sobic002G218000 Sobic003G403400--Sobic005G111100 Sobic003G350300 Sobic003G350300 Sobic003G403400--Sobic003G350300 Sobic003G403400--Sobic010G225300 Sobic003G403400--Sobic009G232800 Sobic004G265700 Sobic004G265700 Sobic003G403400--Sobic004G265700 Sobic004G205000--Sobic004G177700 Sobic002G267500 Sobic002G267500 Sobic004G205000--Sobic002G267500 Sobic010G149300 Sobic010G149300 Sobic004G205000--Sobic010G149300 Sobic002G083266 Sobic002G083266 Sobic004G205000--Sobic002G083266 Sobic005G034400 Sobic005G034400 Sobic004G205000--Sobic005G034400 Sobic004G272800 Sobic004G272800 Sobic004G205000--Sobic004G272800 Sobic010G086200 Sobic010G086200 Sobic004G205000--Sobic010G086200 Sobic007G198100 Sobic007G198100 Sobic004G205000--Sobic007G198100 Sobic004G205000--Sobic009G143400 Sobic003G317100 Sobic003G317100 Sobic003G191500--Sobic003G317100 Sobic003G191500--Sobic003G072300 Sobic003G191500--Sobic009G063900 Sobic004G205100 Sobic004G205100 Sobic003G191500--Sobic004G205100 Sobic003G041200 Sobic003G041200 Sobic003G191500--Sobic003G041200 Sobic003G352300 Sobic003G352300 Sobic003G191500--Sobic003G352300 Sobic002G104900 Sobic002G104900 Sobic003G191500--Sobic002G104900 Sobic006G084600 Sobic006G084600 Sobic003G191500--Sobic006G084600 Sobic004G259600 Sobic004G259600 Sobic003G191500--Sobic004G259600
Octagon: transcription factors


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