Gene annotation
Transcriptome id Sobic.010G131000.3,Sobic.010G131000.1,Sobic.010G131000.2
Synonym
Functional annotation BRCA1 C Terminus domain containing protein, expressed
UniProt A0A194YIT9 , A0A1W0VSR4
Pfam PF04782
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G67180 : zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein
RAP-DB (Rice) LOC_Os08g31930.1 : BRCA1 C Terminus domain containing protein, expressed
MaizeGDB (Corn) Zm00025a047982 , Zm00025a014502 , Zm00025a031029
Brachypodium KQJ98265
Barley -
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.010G131000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G062500 -(PubMedID : 26976818)@glycine cleavage system H protein, putative, expressed K02437: gcvH, glycine cleavage system H protein
2 Sobic.004G186200 thioredoxin, putative, expressed -
3 Sobic.005G036100 phosphoglycerate mutase, putative, expressed K15634: 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase
4 Sobic.005G204200 peptide chain release factor protein, putative, expressed K02835: prfA, MTRF1, peptide chain release factor 1
5 Sobic.004G211600 psaB translation factor, putative, expressed -
6 Sobic.008G116300 expressed protein -
7 Sobic.009G121000 expressed protein -
8 Sobic.005G063000 short chain dehydrogenase/reductase protein, putative, expressed -
9 Sobic.010G043800 uncharacterized protein ycf45, putative, expressed -
10 Sobic.001G158900 helix-loop-helix DNA-binding domain containing protein, expressed K16189: phytochrome-interacting factor 4
11 Sobic.003G077400 peptidase M50 family protein, putative, expressed -
12 Sobic.007G138300 CAAX amino terminal protease family protein, putative, expressed K07052: uncharacterized protein
13 Sobic.002G364000 myosin heavy chain-related, putative, expressed -
14 Sobic.010G002700 expressed protein -
15 Sobic.002G347600 pentatricopeptide containing protein, putative, expressed -
16 Sobic.006G101500 expressed protein -
17 Sobic.009G127400 PAC, putative, expressed -
18 Sobic.010G214100 D-3-phosphoglycerate dehydrogenase, chloroplast precursor, putative, expressed K00058: serA, D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase
19 Sobic.003G160800 tetratricopeptide repeat domain containing protein, expressed -
20 Sobic.006G273400 pentatricopeptide repeat protein, putative, expressed -


Gene co-expression network
sample Sobic010G131000 Sobic010G131000 Sobic008G062500 Sobic008G062500 Sobic010G131000--Sobic008G062500 Sobic004G186200 Sobic004G186200 Sobic010G131000--Sobic004G186200 Sobic005G036100 Sobic005G036100 Sobic010G131000--Sobic005G036100 Sobic005G204200 Sobic005G204200 Sobic010G131000--Sobic005G204200 Sobic004G211600 Sobic004G211600 Sobic010G131000--Sobic004G211600 Sobic008G116300 Sobic008G116300 Sobic010G131000--Sobic008G116300 Sobic009G121000 Sobic009G121000 Sobic010G131000--Sobic009G121000 Sobic005G063000 Sobic005G063000 Sobic010G131000--Sobic005G063000 Sobic010G043800 Sobic010G043800 Sobic010G131000--Sobic010G043800 Sobic003G412900 Sobic003G412900 Sobic008G062500--Sobic003G412900 Sobic009G055800 Sobic009G055800 Sobic008G062500--Sobic009G055800 Sobic003G077400 Sobic003G077400 Sobic008G062500--Sobic003G077400 Sobic003G160800 Sobic003G160800 Sobic008G062500--Sobic003G160800 Sobic003G110700 Sobic003G110700 Sobic008G062500--Sobic003G110700 Sobic007G085800 Sobic007G085800 Sobic008G062500--Sobic007G085800 Sobic001G168800 Sobic001G168800 Sobic008G062500--Sobic001G168800 Sobic003G439000 Sobic003G439000 Sobic008G062500--Sobic003G439000 Sobic009G164300 Sobic009G164300 Sobic008G062500--Sobic009G164300 Sobic004G186200--Sobic005G036100 Sobic004G186200--Sobic008G062500 Sobic004G186200--Sobic009G055800 Sobic004G186200--Sobic008G116300 Sobic004G186200--Sobic003G110700 Sobic001G069000 Sobic001G069000 Sobic004G186200--Sobic001G069000 Sobic010G096300 Sobic010G096300 Sobic004G186200--Sobic010G096300 Sobic008G066100 Sobic008G066100 Sobic004G186200--Sobic008G066100 Sobic001G035800 Sobic001G035800 Sobic004G186200--Sobic001G035800 Sobic005G036100--Sobic004G186200 Sobic001G337600 Sobic001G337600 Sobic005G036100--Sobic001G337600 Sobic002G000600 Sobic002G000600 Sobic005G036100--Sobic002G000600 Sobic005G036100--Sobic008G062500 Sobic005G036100--Sobic009G055800 Sobic001G102500 Sobic001G102500 Sobic005G036100--Sobic001G102500 Sobic003G137100 Sobic003G137100 Sobic005G036100--Sobic003G137100 Sobic005G036100--Sobic003G110700 Sobic004G248400 Sobic004G248400 Sobic005G036100--Sobic004G248400 Sobic005G204200--Sobic003G160800 Sobic005G204200--Sobic005G063000 Sobic002G220900 Sobic002G220900 Sobic005G204200--Sobic002G220900 Sobic005G001700 Sobic005G001700 Sobic005G204200--Sobic005G001700 Sobic003G233700 Sobic003G233700 Sobic005G204200--Sobic003G233700 Sobic010G035400 Sobic010G035400 Sobic005G204200--Sobic010G035400 Sobic007G103400 Sobic007G103400 Sobic005G204200--Sobic007G103400 Sobic003G085100 Sobic003G085100 Sobic005G204200--Sobic003G085100 Sobic004G336200 Sobic004G336200 Sobic005G204200--Sobic004G336200 Sobic006G101500 Sobic006G101500 Sobic004G211600--Sobic006G101500 Sobic004G211600--Sobic005G063000 Sobic001G183000 Sobic001G183000 Sobic004G211600--Sobic001G183000 Sobic010G214100 Sobic010G214100 Sobic004G211600--Sobic010G214100 Sobic008G006100 Sobic008G006100 Sobic004G211600--Sobic008G006100 Sobic001G134700 Sobic001G134700 Sobic004G211600--Sobic001G134700 Sobic009G062400 Sobic009G062400 Sobic004G211600--Sobic009G062400 Sobic004G298900 Sobic004G298900 Sobic004G211600--Sobic004G298900 Sobic004G211600--Sobic003G160800 Sobic003G387100 Sobic003G387100 Sobic008G116300--Sobic003G387100 Sobic008G116300--Sobic007G085800 Sobic008G116300--Sobic006G101500 Sobic002G036000 Sobic002G036000 Sobic008G116300--Sobic002G036000 Sobic008G116300--Sobic003G412900 Sobic008G116300--Sobic001G069000 Sobic008G116300--Sobic010G214100 Sobic006G010900 Sobic006G010900 Sobic008G116300--Sobic006G010900 Sobic008G116300--Sobic003G077400 Sobic009G121000--Sobic010G043800 Sobic009G121000--Sobic005G063000 Sobic003G247400 Sobic003G247400 Sobic009G121000--Sobic003G247400 Sobic001G198100 Sobic001G198100 Sobic009G121000--Sobic001G198100 Sobic006G142600 Sobic006G142600 Sobic009G121000--Sobic006G142600 Sobic009G121000--Sobic003G160800 Sobic003G276300 Sobic003G276300 Sobic009G121000--Sobic003G276300 Sobic009G121000--Sobic007G103400 Sobic010G002700 Sobic010G002700 Sobic009G121000--Sobic010G002700 Sobic005G063000--Sobic004G211600 Sobic005G063000--Sobic005G204200 Sobic005G063000--Sobic009G121000 Sobic005G063000--Sobic005G001700 Sobic005G063000--Sobic003G085100 Sobic005G063000--Sobic003G160800 Sobic005G063000--Sobic010G214100 Sobic005G063000--Sobic007G103400 Sobic005G063000--Sobic010G043800 Sobic010G043800--Sobic009G121000 Sobic007G136200 Sobic007G136200 Sobic010G043800--Sobic007G136200 Sobic001G504400 Sobic001G504400 Sobic010G043800--Sobic001G504400 Sobic010G043800--Sobic006G142600 Sobic010G043800--Sobic010G002700 Sobic006G158100 Sobic006G158100 Sobic010G043800--Sobic006G158100 Sobic010G043800--Sobic007G103400 Sobic001G169900 Sobic001G169900 Sobic010G043800--Sobic001G169900 Sobic001G378100 Sobic001G378100 Sobic010G043800--Sobic001G378100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.