Gene annotation
| Transcriptome id | Sobic.010G208400.1 |
|---|---|
| Synonym | Sb10g025520 |
| Functional annotation | OsProCP2 - Putative Lysosomal Pro-x Carboxypeptidase homologue, expressed |
| UniProt | C5Z6S5 |
| Pfam | PF05577 |
| Panther DB | PTHR11010 PTHR11010:SF31 |
| NCBI CDD | - |
| KEGG Orthology | K01285; lysosomal Pro-X carboxypeptidase |
| Gene Ontology | GO:0008236; serine-type peptidase activity GO:0006508proteolysis |
Orthologs (automatic annotation)
| TAIR | AT2G24280 : alpha/beta-Hydrolases superfamily protein |
|---|---|
| RAP-DB (Rice) | LOC_Os06g43930.1 : OsProCP2 - Putative Lysosomal Pro-x Carboxypeptidase homologue, expressed |
| MaizeGDB (Corn) | Zm00025a042054 , Zm00025a051600 |
| Brachypodium | KQK16822 |
| Barley | HORVU6Hr1G084920.1 , HORVU4Hr1G001410.1 , HORVU1Hr1G008670.1 |
| Wheat | TraesCS7D02G499500 , TraesCS7A02G510000 , TraesCS7D02G499300 , TraesCS7B02G420100 , TraesCS7D02G499400 , TraesCS7B02G420500 , TraesCS7B02G420600 , TraesCS7B02G420400 , TraesCS7B02G419900 , TraesCS7B02G419800 , TraesCS7B02G420700 , TraesCS7D02G499200 , TraesCS7A02G509900 , TraesCS7A02G510200 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.001G308800 | expressed protein | K18065: Cdc25 family phosphatase |
| 2 | Sobic.002G301700 | amidase, putative, expressed | K01426: E3.5.1.4, amidase |
| 3 | Sobic.001G023700 | expressed protein | - |
| 4 | Sobic.002G033800 | expressed protein | - |
| 5 | Sobic.003G008900 | erythronate-4-phosphate dehydrogenase domain containing protein, expressed | K15919: glyoxylate/hydroxypyruvate reductase |
| 6 | Sobic.002G353300 | Geranilgeranil pyrophosphate synthetase 1 GGPS1 (Os)(PubMedID : 27208977)@polyprenyl synthetase, putative, expressed | K13789: geranylgeranyl diphosphate synthase, type II |
| 7 | Sobic.009G143100 | cytochrome b6-f complex iron-sulfur subunit, chloroplast precursor, putative, expressed | K02636: cytochrome b6-f complex iron-sulfur subunit |
| 8 | Sobic.001G447700 | expressed protein | - |
| 9 | Sobic.001G295300 | peptide methionine sulfoxide reductase, putative, expressed | K07304: peptide-methionine (S)-S-oxide reductase |
| 10 | Sobic.001G006400 | DANA2, putative, expressed | - |
| 11 | Sobic.002G198600 | -(PubMedID : 29017446)@expressed protein | - |
| 12 | Sobic.003G433900 | expressed protein | - |
| 13 | Sobic.004G311100 | -(PubMedID : 29017446)@-(PubMedID : 26976818)@soluble inorganic pyrophosphatase, putative, expressed | K01507: inorganic pyrophosphatase |
| 14 | Sobic.008G063500 | Photosystem I reaction center subunit N(PubMedID : 26186930)@photosystem I reaction center subunit N, chloroplast precursor, putative, expressed | K02701: photosystem I subunit PsaN |
| 15 | Sobic.001G498300 | galactose mutarotase-like, putative, expressed | - |
| 16 | Sobic.001G221300 | alcohol oxidase, putative, expressed | K17756: long-chain-alcohol oxidase |
| 17 | Sobic.007G071500 | photosystem II 10 kDa polypeptide, chloroplast precursor, putative, expressed | K03541: photosystem II 10kDa protein |
| 18 | Sobic.006G248200 | - | - |
| 19 | Sobic.004G023200 | Polyketide cyclase/dehydrase and lipid transport superfamily protein(PubMedID : 26465154)@membrane related protein CP5, putative, expressed | - |
| 20 | Sobic.004G238500 | Geranylgeranyl reductase (Os)(PubMedID : 27208977)@FAD binding domain containing protein, expressed | K10960: chlP, geranylgeranyl diphosphate/geranylgeranyl-bacteriochlorophyllide a reductase |
Gene co-expression network
Octagon: transcription factors
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