Gene annotation
Transcriptome id Sobic.010G214900.1
Synonym 4CL.1, 4CL1, Sb10g026130, AT4CL1
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
4-Coumarate-CoA ligase (PubMedID : 22313236)
AMP-binding domain containing protein, expressed
UniProt C5Z783
Pfam PF13193 PF00501
Panther DB PTHR24096 PTHR24096:SF201
NCBI CDD -
KEGG Orthology K01904; 4-coumarate--CoA ligase
Gene Ontology GO:0008152; metabolic process GO:0003824catalytic activity


Orthologs (automatic annotation)
TAIR AT3G21240 : 4-coumarate:CoA ligase 2
RAP-DB (Rice) LOC_Os06g44620.1 : AMP-binding domain containing protein, expressed
MaizeGDB (Corn) Zm00025a051700 , Zm00025a019174
Brachypodium KQJ95780 , KQK16898 , KQK16897 , KQJ93616
Barley HORVU0Hr1G018190.5 , HORVU0Hr1G018190.4 , HORVU0Hr1G018190.7 , HORVU0Hr1G018190.6 , HORVU0Hr1G018190.1 , HORVU0Hr1G018190.3 , HORVU0Hr1G018190.2 , HORVU0Hr1G018190.9 , HORVU0Hr1G018190.8 , HORVU7Hr1G111130.4 , HORVU7Hr1G111130.6 , HORVU7Hr1G111130.7 , HORVU7Hr1G111130.1 , HORVU7Hr1G111130.2 , HORVU7Hr1G111130.3 , HORVU6Hr1G030390.3 , HORVU6Hr1G030390.2 , HORVU6Hr1G030390.5 , HORVU0Hr1G018190.10 , HORVU0Hr1G018190.13 , HORVU0Hr1G018190.12 , HORVU7Hr1G111130.5 , HORVU0Hr1G002720.3 , HORVU0Hr1G002720.2 , HORVU0Hr1G002720.5 , HORVU0Hr1G002720.4 , HORVU0Hr1G002720.7 , HORVU0Hr1G002720.6
Wheat TraesCS6A02G151700 , TraesCS6A02G266700 , TraesCS7D02G483400 , TraesCS6D02G141700 , TraesCS2B02G171200 , TraesCS7A02G496200 , TraesCS6B02G179900 , TraesCS6B02G179900 , TraesCS2D02G150400 , TraesCS6B02G294100 , TraesCS2A02G145800
Populus -


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cDNA sequences
Sobic.010G214900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G198200 CRP3 - Cysteine-rich family protein precursor, expressed -
2 Sobic.007G157900 gibberellin receptor GID1L2, putative, expressed -
3 Sobic.006G156000 ferredoxin-thioredoxin reductase, variable chain, putative, expressed -
4 Sobic.001G432000 LYR motif containing protein, putative, expressed -
5 Sobic.008G127500 expressed protein -
6 Sobic.004G293100 phosphatase, putative, expressed -
7 Sobic.006G008400 receptor protein kinase, putative, expressed -
8 Sobic.005G168100 ADP-ribosylation factor, putative, expressed K07950: ADP-ribosylation factor-like protein 5B
9 Sobic.009G062000 ribosomal protein L51, putative, expressed K03946: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 2
10 Sobic.001G110300 fb27, putative, expressed -
11 Sobic.003G305100 expressed protein -
12 Sobic.002G078300 acyl carrier protein, putative, expressed K03955: NADH dehydrogenase (ubiquinone) 1 alpha/beta subcomplex 1, acyl-carrier protein
13 Sobic.008G021100 ribosomal protein, putative, expressed K02960: RP-S16e, small subunit ribosomal protein S16e
14 Sobic.001G510800 ribosomal protein, putative, expressed K02894: RP-L23e, large subunit ribosomal protein L23e
15 Sobic.001G286200 expressed protein K03966: NADH dehydrogenase (ubiquinone) 1 beta subcomplex subunit 10
16 Sobic.007G177200 peptidase, T1 family, putative, expressed K02731: 20S proteasome subunit alpha 4
17 Sobic.001G496500 MTN26L2 - MtN26 family protein precursor, expressed -
18 Sobic.001G304400 expressed protein -
19 Sobic.009G238900 dehydrogenase, putative, expressed K00031: IDH1, IDH2, isocitrate dehydrogenase
20 Sobic.004G325200 60S ribosome subunit biogenesis protein NIP7, putative, expressed K07565: 60S ribosome subunit biogenesis protein NIP7


Gene co-expression network
sample Sobic010G214900 Sobic010G214900 Sobic001G198200 Sobic001G198200 Sobic010G214900--Sobic001G198200 Sobic007G157900 Sobic007G157900 Sobic010G214900--Sobic007G157900 Sobic006G156000 Sobic006G156000 Sobic010G214900--Sobic006G156000 Sobic001G432000 Sobic001G432000 Sobic010G214900--Sobic001G432000 Sobic008G127500 Sobic008G127500 Sobic010G214900--Sobic008G127500 Sobic004G293100 Sobic004G293100 Sobic010G214900--Sobic004G293100 Sobic006G008400 Sobic006G008400 Sobic010G214900--Sobic006G008400 Sobic005G168100 Sobic005G168100 Sobic010G214900--Sobic005G168100 Sobic009G062000 Sobic009G062000 Sobic010G214900--Sobic009G062000 Sobic010G171501 Sobic010G171501 Sobic001G198200--Sobic010G171501 Sobic001G129400 Sobic001G129400 Sobic001G198200--Sobic001G129400 Sobic010G194200 Sobic010G194200 Sobic001G198200--Sobic010G194200 Sobic004G106700 Sobic004G106700 Sobic001G198200--Sobic004G106700 Sobic003G003000 Sobic003G003000 Sobic001G198200--Sobic003G003000 Sobic001G198200--Sobic010G214900 Sobic003G213900 Sobic003G213900 Sobic001G198200--Sobic003G213900 Sobic004G018400 Sobic004G018400 Sobic001G198200--Sobic004G018400 Sobic005G127100 Sobic005G127100 Sobic001G198200--Sobic005G127100 Sobic009G238900 Sobic009G238900 Sobic007G157900--Sobic009G238900 Sobic004G351500 Sobic004G351500 Sobic007G157900--Sobic004G351500 Sobic010G194100 Sobic010G194100 Sobic007G157900--Sobic010G194100 Sobic002G232700 Sobic002G232700 Sobic007G157900--Sobic002G232700 Sobic009G054100 Sobic009G054100 Sobic007G157900--Sobic009G054100 Sobic003G417100 Sobic003G417100 Sobic007G157900--Sobic003G417100 Sobic004G062500 Sobic004G062500 Sobic007G157900--Sobic004G062500 Sobic004G262500 Sobic004G262500 Sobic007G157900--Sobic004G262500 Sobic007G127100 Sobic007G127100 Sobic007G157900--Sobic007G127100 Sobic003G443300 Sobic003G443300 Sobic006G156000--Sobic003G443300 Sobic006G156000--Sobic001G432000 Sobic006G156000--Sobic005G168100 Sobic003G219800 Sobic003G219800 Sobic006G156000--Sobic003G219800 Sobic001G084100 Sobic001G084100 Sobic006G156000--Sobic001G084100 Sobic001G304400 Sobic001G304400 Sobic006G156000--Sobic001G304400 Sobic009G212200 Sobic009G212200 Sobic006G156000--Sobic009G212200 Sobic002G361700 Sobic002G361700 Sobic006G156000--Sobic002G361700 Sobic001G040100 Sobic001G040100 Sobic006G156000--Sobic001G040100 Sobic010G251600 Sobic010G251600 Sobic001G432000--Sobic010G251600 Sobic001G432000--Sobic005G168100 Sobic001G432000--Sobic001G304400 Sobic009G232900 Sobic009G232900 Sobic001G432000--Sobic009G232900 Sobic007G019400 Sobic007G019400 Sobic001G432000--Sobic007G019400 Sobic003G150000 Sobic003G150000 Sobic001G432000--Sobic003G150000 Sobic001G054900 Sobic001G054900 Sobic001G432000--Sobic001G054900 Sobic010G206200 Sobic010G206200 Sobic001G432000--Sobic010G206200 Sobic001G432000--Sobic006G156000 Sobic010G018400 Sobic010G018400 Sobic008G127500--Sobic010G018400 Sobic010G054200 Sobic010G054200 Sobic008G127500--Sobic010G054200 Sobic008G127500--Sobic001G304400 Sobic007G177200 Sobic007G177200 Sobic008G127500--Sobic007G177200 Sobic010G065400 Sobic010G065400 Sobic008G127500--Sobic010G065400 Sobic003G129800 Sobic003G129800 Sobic008G127500--Sobic003G129800 Sobic003G368500 Sobic003G368500 Sobic008G127500--Sobic003G368500 Sobic001G058900 Sobic001G058900 Sobic008G127500--Sobic001G058900 Sobic001G172000 Sobic001G172000 Sobic008G127500--Sobic001G172000 Sobic003G015400 Sobic003G015400 Sobic004G293100--Sobic003G015400 Sobic002G263100 Sobic002G263100 Sobic004G293100--Sobic002G263100 Sobic009G024500 Sobic009G024500 Sobic004G293100--Sobic009G024500 Sobic004G151400 Sobic004G151400 Sobic004G293100--Sobic004G151400 Sobic003G305100 Sobic003G305100 Sobic004G293100--Sobic003G305100 Sobic008G021100 Sobic008G021100 Sobic004G293100--Sobic008G021100 Sobic004G293100--Sobic007G177200 Sobic007G134900 Sobic007G134900 Sobic004G293100--Sobic007G134900 Sobic004G293100--Sobic008G127500 Sobic006G008400--Sobic009G238900 Sobic001G096100 Sobic001G096100 Sobic006G008400--Sobic001G096100 Sobic006G002700 Sobic006G002700 Sobic006G008400--Sobic006G002700 Sobic006G008400--Sobic001G304400 Sobic006G038200 Sobic006G038200 Sobic006G008400--Sobic006G038200 Sobic006G008400--Sobic009G062000 Sobic003G206700 Sobic003G206700 Sobic006G008400--Sobic003G206700 Sobic001G168600 Sobic001G168600 Sobic006G008400--Sobic001G168600 Sobic001G289100 Sobic001G289100 Sobic006G008400--Sobic001G289100 Sobic005G168100--Sobic009G232900 Sobic005G168100--Sobic001G432000 Sobic005G168100--Sobic006G156000 Sobic003G155400 Sobic003G155400 Sobic005G168100--Sobic003G155400 Sobic003G209000 Sobic003G209000 Sobic005G168100--Sobic003G209000 Sobic002G296200 Sobic002G296200 Sobic005G168100--Sobic002G296200 Sobic002G418400 Sobic002G418400 Sobic005G168100--Sobic002G418400 Sobic003G215700 Sobic003G215700 Sobic005G168100--Sobic003G215700 Sobic005G168100--Sobic003G150000 Sobic009G062000--Sobic001G304400 Sobic001G095632 Sobic001G095632 Sobic009G062000--Sobic001G095632 Sobic008G129400 Sobic008G129400 Sobic009G062000--Sobic008G129400 Sobic009G062000--Sobic001G432000 Sobic009G062000--Sobic010G018400 Sobic009G062000--Sobic004G351500 Sobic009G062000--Sobic003G305100 Sobic001G286200 Sobic001G286200 Sobic009G062000--Sobic001G286200 Sobic002G073800 Sobic002G073800 Sobic009G062000--Sobic002G073800
Octagon: transcription factors


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